CircRNA Information

General Information
circRNA Basic Information
CircID chr1:24916529|24916710
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTGCCTGTTCCTGTCCCTGGCATATCCTGGCCCTGAGATCAGGTCCCCCCCCATACCCTGGGTTGCAGCCCCACTCCTTTGTCTTTGGCCCTGGACAAATCCTTGGCCTTTCGGGTCCTCAGCGTCCCCATCTGTAAGAGTGAAGGGACCAGCTCAGCGGCTCCTGGTCACTGAGCAACCCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:24916529|24916710 hsa-miR-198 0 0 1
chr1:24916529|24916710 hsa-miR-492 0 1 1
chr1:24916529|24916710 hsa-miR-558 0 0 1
chr1:24916529|24916710 hsa-miR-600 0 0 1
chr1:24916529|24916710 hsa-miR-665 0 1 1
chr1:24916529|24916710 hsa-miR-873-5p 0 0 1
chr1:24916529|24916710 hsa-miR-873-3p 0 0 1
chr1:24916529|24916710 hsa-miR-1178-5p 0 0 1
chr1:24916529|24916710 hsa-miR-1178-3p 0 0 1
chr1:24916529|24916710 hsa-miR-1266-5p 0 0 1
chr1:24916529|24916710 hsa-miR-1266-3p 0 0 1
chr1:24916529|24916710 hsa-miR-1224-5p 1 1 1
chr1:24916529|24916710 hsa-miR-611 1 0 0
chr1:24916529|24916710 hsa-miR-663a 1 0 0
chr1:24916529|24916710 hsa-miR-762 1 0 0
chr1:24916529|24916710 hsa-miR-1268a 1 0 0
chr1:24916529|24916710 hsa-miR-4298 0 1 0
chr1:24916529|24916710 hsa-miR-3649 0 1 0
chr1:24916529|24916710 hsa-miR-3918 0 1 0
chr1:24916529|24916710 hsa-miR-1268b 1 0 0
chr1:24916529|24916710 hsa-miR-4656 1 0 0
chr1:24916529|24916710 hsa-miR-4741 1 0 0
chr1:24916529|24916710 hsa-miR-4751 0 1 0
chr1:24916529|24916710 hsa-miR-5190 0 1 0
chr1:24916529|24916710 hsa-miR-5683 0 1 0
chr1:24916529|24916710 hsa-miR-7150 1 0 0
chr1:24916529|24916710 hsa-miR-8089 1 0 0
chr1:24916529|24916710 hsa-miR-211-3p 0 1 0
chr1:24916529|24916710 hsa-miR-4433b-3p 1 1 0
chr1:24916529|24916710 hsa-miR-93-3p 0 1 0
chr1:24916529|24916710 hsa-miR-4433a-3p 1 1 0
chr1:24916529|24916710 hsa-miR-3926 0 1 0
chr1:24916529|24916710 hsa-miR-6807-5p 1 0 0
chr1:24916529|24916710 hsa-miR-6757-5p 1 0 0
chr1:24916529|24916710 hsa-miR-3677-5p 0 1 0
chr1:24916529|24916710 hsa-miR-6730-5p 0 1 0
chr1:24916529|24916710 hsa-miR-4753-5p 0 1 0
chr1:24916529|24916710 hsa-miR-7160-5p 0 1 0
chr1:24916529|24916710 hsa-miR-6762-3p 1 0 0
chr1:24916529|24916710 hsa-miR-6727-5p 1 0 0
chr1:24916529|24916710 hsa-miR-7845-5p 0 1 0
chr1:24916529|24916710 hsa-miR-6742-5p 1 0 0
chr1:24916529|24916710 hsa-miR-6716-5p 1 0 0
chr1:24916529|24916710 hsa-miR-3180-3p 1 0 0
chr1:24916529|24916710 hsa-miR-6796-5p 0 1 0
chr1:24916529|24916710 hsa-miR-6782-5p 1 1 0
chr1:24916529|24916710 hsa-miR-6888-5p 1 0 0
chr1:24916529|24916710 hsa-miR-5006-5p 1 1 0
chr1:24916529|24916710 hsa-miR-6786-5p 1 0 0
chr1:24916529|24916710 hsa-miR-1226-5p 1 0 0
chr1:24916529|24916710 hsa-miR-4640-5p 1 1 0
chr1:24916529|24916710 hsa-miR-6753-5p 1 1 0
chr1:24916529|24916710 hsa-miR-3127-5p 0 1 0
chr1:24916529|24916710 hsa-miR-6749-5p 1 0 0
chr1:24916529|24916710 hsa-miR-4743-5p 1 0 0
chr1:24916529|24916710 hsa-miR-6781-5p 1 0 0
chr1:24916529|24916710 hsa-miR-6877-5p 1 0 0
chr1:24916529|24916710 hsa-miR-6895-5p 0 1 0
chr1:24916529|24916710 hsa-miR-664b-5p 0 1 0
chr1:24916529|24916710 hsa-miR-3191-3p 1 1 0
chr1:24916529|24916710 hsa-miR-1296-3p 1 1 0
chr1:24916529|24916710 hsa-miR-1207-5p 1 0 0
chr1:24916529|24916710 hsa-miR-6775-5p 1 0 0
chr1:24916529|24916710 hsa-miR-6743-5p 1 1 0
chr1:24916529|24916710 hsa-miR-6756-5p 1 1 0
chr1:24916529|24916710 hsa-miR-6769a-5p 1 0 0
chr1:24916529|24916710 hsa-miR-6803-5p 1 0 0
chr1:24916529|24916710 hsa-miR-6813-5p 1 0 0
chr1:24916529|24916710 hsa-miR-6819-5p 1 0 0
chr1:24916529|24916710 hsa-miR-6875-5p 1 0 0
chr1:24916529|24916710 hsa-miR-7111-5p 1 0 0
chr1:24916529|24916710 hsa-miR-6836-5p 1 0 0
chr1:24916529|24916710 hsa-miR-10396b-5p 1 0 0
chr1:24916529|24916710 hsa-miR-328-5p 1 0 0
chr1:24916529|24916710 hsa-miR-4685-5p 1 1 0
chr1:24916529|24916710 hsa-miR-4726-5p 1 1 0
chr1:24916529|24916710 hsa-miR-4745-5p 1 1 0
chr1:24916529|24916710 hsa-miR-4749-5p 1 0 0
chr1:24916529|24916710 hsa-miR-6794-5p 1 0 0
chr1:24916529|24916710 hsa-miR-6795-5p 1 1 0
chr1:24916529|24916710 hsa-miR-6848-5p 1 0 0
chr1:24916529|24916710 hsa-miR-6887-5p 1 0 0
chr1:24916529|24916710 hsa-miR-939-5p 1 0 0
chr1:24916529|24916710 hsa-miR-1238-5p 1 0 0
chr1:24916529|24916710 hsa-miR-365a-5p 1 0 0
chr1:24916529|24916710 hsa-miR-365b-5p 1 0 0
chr1:24916529|24916710 hsa-miR-3679-5p 1 1 0
chr1:24916529|24916710 hsa-miR-6837-5p 1 1 0
chr1:24916529|24916710 hsa-miR-330-5p 1 0 0
chr1:24916529|24916710 hsa-miR-6764-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr1:24916529|24916710
ORF Type ORF1
Protein Length 38
Nucleotide Length 117
Protein Sequence MGCSPTPLSLALDKSLAFRVLSVPICKSEGTSSAAPGH
Nucleotide Sequence CTGGGTTGCAGCCCCACTCCTTTGTCTTTGGCCCTGGACAAATCCTTGGCCTTTCGGGTCCTCAGCGTCCCCATCTGTAAGAGTGAAGGGACCAGCTCAGCGGCTCCTGGTCACTGA
CircID chr1:24916529|24916710
ORF Type ORF2
Protein Length 59
Nucleotide Length 177
Protein Sequence MFLSLAYPGPEIRSPPIPWVAAPLLCLWPWTNPWPFGSSASPSVRVKGPAQRLLVTEQP
Nucleotide Sequence CTGTTCCTGTCCCTGGCATATCCTGGCCCTGAGATCAGGTCCCCCCCCATACCCTGGGTTGCAGCCCCACTCCTTTGTCTTTGGCCCTGGACAAATCCTTGGCCTTTCGGGTCCTCAGCGTCCCCATCTGTAAGAGTGAAGGGACCAGCTCAGCGGCTCCTGGTCACTGAGCAACCC
CircID chr1:24916529|24916710
ORF Type ORF3
Protein Length 36
Nucleotide Length 111
Protein Sequence MALRSGPPPYPGLQPHSFVFGPGQILGLSGPQRPHL
Nucleotide Sequence CTGGCCCTGAGATCAGGTCCCCCCCCATACCCTGGGTTGCAGCCCCACTCCTTTGTCTTTGGCCCTGGACAAATCCTTGGCCTTTCGGGTCCTCAGCGTCCCCATCTGTAA
CircID chr1:24916529|24916710
ORF Type ORF4
Protein Length 37
Nucleotide Length 114
Protein Sequence MVPSLLQMGTLRTRKAKDLSRAKDKGVGLQPRVWGGT
Nucleotide Sequence CTGGTCCCTTCACTCTTACAGATGGGGACGCTGAGGACCCGAAAGGCCAAGGATTTGTCCAGGGCCAAAGACAAAGGAGTGGGGCTGCAACCCAGGGTATGGGGGGGGACCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab