CircRNA Information

General Information
circRNA Basic Information
CircID chr1:25340474|25343073
Strand +
CircType exon
Host Gene ENSG00000183726.10;
Algorism find_circ;CIRI2;CIRC
Sequence TGACCTGAAAAAAATGTCTGGATTTCTAGAGGGCTTGAGATGCTCAGAATGCATTGACTGGGGGGAAAAGCGCAATACTATTGCTTCCATTGCTGCTGGTGTACTATTTTTTACAGGCTGGTGGATTATCATAGATGCAGCTGTTATTTATCCCACCATGAAAGATTTCAACCACTCATACCATGCCTGTGGTGTTATAGCAACCATAGCCTTCCTAAT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:25340474|25343073 hsa-miR-33a-5p 0 0 1
chr1:25340474|25343073 hsa-miR-33a-3p 0 0 1
chr1:25340474|25343073 hsa-miR-137-5p 0 0 1
chr1:25340474|25343073 hsa-miR-137-3p 0 0 1
chr1:25340474|25343073 hsa-miR-143-5p 0 0 1
chr1:25340474|25343073 hsa-miR-143-3p 0 0 1
chr1:25340474|25343073 hsa-miR-376b-5p 0 0 1
chr1:25340474|25343073 hsa-miR-376b-3p 0 0 1
chr1:25340474|25343073 hsa-miR-487a-5p 0 0 1
chr1:25340474|25343073 hsa-miR-487a-3p 0 0 1
chr1:25340474|25343073 hsa-miR-518f-5p 0 0 1
chr1:25340474|25343073 hsa-miR-518f-3p 0 0 1
chr1:25340474|25343073 hsa-miR-518b 0 0 1
chr1:25340474|25343073 hsa-miR-518c-5p 0 0 1
chr1:25340474|25343073 hsa-miR-518c-3p 0 0 1
chr1:25340474|25343073 hsa-miR-586 0 0 1
chr1:25340474|25343073 hsa-miR-625-5p 0 0 1
chr1:25340474|25343073 hsa-miR-625-3p 0 0 1
chr1:25340474|25343073 hsa-miR-631 0 0 1
chr1:25340474|25343073 hsa-miR-33b-5p 0 0 1
chr1:25340474|25343073 hsa-miR-33b-3p 0 0 1
chr1:25340474|25343073 hsa-miR-637 1 0 1
chr1:25340474|25343073 hsa-miR-1301-5p 0 0 1
chr1:25340474|25343073 hsa-miR-1301-3p 0 0 1
chr1:25340474|25343073 hsa-miR-943 0 0 1
chr1:25340474|25343073 hsa-miR-1231 0 0 1
chr1:25340474|25343073 hsa-miR-1290 0 0 1
chr1:25340474|25343073 hsa-miR-1305 0 0 1
chr1:25340474|25343073 hsa-miR-20a-3p 0 1 1
chr1:25340474|25343073 hsa-miR-1224-3p 0 0 1
chr1:25340474|25343073 hsa-miR-654-3p 0 0 1
chr1:25340474|25343073 hsa-miR-518d-5p 0 0 1
chr1:25340474|25343073 hsa-miR-519b-5p 0 1 1
chr1:25340474|25343073 hsa-miR-519c-5p 0 1 1
chr1:25340474|25343073 hsa-miR-520c-5p 0 0 1
chr1:25340474|25343073 hsa-miR-876-5p 0 0 1
chr1:25340474|25343073 hsa-miR-518a-3p 0 0 1
chr1:25340474|25343073 hsa-miR-518d-3p 0 0 1
chr1:25340474|25343073 hsa-miR-516a-3p 0 0 1
chr1:25340474|25343073 hsa-miR-1260 0 0 1
chr1:25340474|25343073 hsa-miR-1280 0 0 1
chr1:25340474|25343073 hsa-miR-138 0 0 1
chr1:25340474|25343073 hsa-miR-376a 0 0 1
chr1:25340474|25343073 hsa-miR-526a 0 0 1
chr1:25340474|25343073 hsa-miR-623 1 0 0
chr1:25340474|25343073 hsa-miR-762 1 0 0
chr1:25340474|25343073 hsa-miR-1299 1 0 0
chr1:25340474|25343073 hsa-miR-3911 1 0 0
chr1:25340474|25343073 hsa-miR-4463 1 0 0
chr1:25340474|25343073 hsa-miR-4525 1 0 0
chr1:25340474|25343073 hsa-miR-4721 0 1 0
chr1:25340474|25343073 hsa-miR-5698 1 0 0
chr1:25340474|25343073 hsa-miR-5787 1 0 0
chr1:25340474|25343073 hsa-miR-6088 1 0 0
chr1:25340474|25343073 hsa-miR-8056 1 1 0
chr1:25340474|25343073 hsa-miR-8089 1 0 0
chr1:25340474|25343073 hsa-miR-138-5p 1 1 0
chr1:25340474|25343073 hsa-miR-4731-5p 1 0 0
chr1:25340474|25343073 hsa-miR-4687-3p 1 0 0
chr1:25340474|25343073 hsa-miR-3692-5p 1 0 0
chr1:25340474|25343073 hsa-miR-6805-5p 1 0 0
chr1:25340474|25343073 hsa-miR-345-3p 0 1 0
chr1:25340474|25343073 hsa-miR-3934-3p 1 1 0
chr1:25340474|25343073 hsa-miR-5088-5p 1 0 0
chr1:25340474|25343073 hsa-miR-7109-5p 1 1 0
chr1:25340474|25343073 hsa-miR-5004-3p 1 0 0
chr1:25340474|25343073 hsa-miR-6771-5p 1 0 0
chr1:25340474|25343073 hsa-miR-2115-5p 0 1 0
chr1:25340474|25343073 hsa-miR-6733-3p 1 0 0
chr1:25340474|25343073 hsa-miR-4763-3p 1 0 0
chr1:25340474|25343073 hsa-miR-6787-5p 1 0 0
chr1:25340474|25343073 hsa-miR-6756-5p 1 0 0
chr1:25340474|25343073 hsa-miR-6803-5p 1 0 0
chr1:25340474|25343073 hsa-miR-6751-5p 1 0 0
chr1:25340474|25343073 hsa-miR-3620-5p 1 0 0
chr1:25340474|25343073 hsa-miR-4745-5p 1 0 0
chr1:25340474|25343073 hsa-miR-6795-5p 1 1 0
chr1:25340474|25343073 hsa-miR-6846-5p 1 0 0
chr1:25340474|25343073 hsa-miR-6848-5p 1 0 0
chr1:25340474|25343073 hsa-miR-6885-5p 1 0 0
chr1:25340474|25343073 hsa-miR-4665-5p 1 0 0
chr1:25340474|25343073 hsa-miR-7151-3p 1 1 0
chr1:25340474|25343073 hsa-miR-6785-5p 1 0 0
chr1:25340474|25343073 hsa-miR-550a-5p 1 0 0
chr1:25340474|25343073 hsa-miR-518e-5p 0 1 0
chr1:25340474|25343073 hsa-miR-519a-5p 0 1 0
chr1:25340474|25343073 hsa-miR-522-5p 0 1 0
chr1:25340474|25343073 hsa-miR-523-5p 0 1 0
chr1:25340474|25343073 hsa-miR-301a-3p 0 1 0
chr1:25340474|25343073 hsa-miR-454-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


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    by mir_boxplot.py


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    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


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circRNA Open Reading Frame (ORF)
CircID chr1:25340474|25343073
ORF Type ORF1
Protein Length 44
Nucleotide Length 132
Protein Sequence MIIHQPVKNSTPAAMEAIVLRFSPQSMHSEHLKPSRNPDIFFRS
Nucleotide Sequence ATGATAATCCACCAGCCTGTAAAAAATAGTACACCAGCAGCAATGGAAGCAATAGTATTGCGCTTTTCCCCCCAGTCAATGCATTCTGAGCATCTCAAGCCCTCTAGAAATCCAGACATTTTTTTCAGGTCA

CircID chr1:25340474|25343073
ORF Type ORF2
Protein Length 54
Nucleotide Length 162
Protein Sequence MGGKAQYYCFHCCWCTIFYRLVDYHRCSCYLSHHERFQPLIPCLWCYSNHSLPN
Nucleotide Sequence CTGGGGGGAAAAGCGCAATACTATTGCTTCCATTGCTGCTGGTGTACTATTTTTTACAGGCTGGTGGATTATCATAGATGCAGCTGTTATTTATCCCACCATGAAAGATTTCAACCACTCATACCATGCCTGTGGTGTTATAGCAACCATAGCCTTCCTAAT

CircID chr1:25340474|25343073
ORF Type ORF3
Protein Length 71
Nucleotide Length 213
Protein Sequence MKKMSGFLEGLRCSECIDWGEKRNTIASIAAGVLFFTGWWIIIDAAVIYPTMKDFNHSYHACGVIATIAFL
Nucleotide Sequence CTGAAAAAAATGTCTGGATTTCTAGAGGGCTTGAGATGCTCAGAATGCATTGACTGGGGGGAAAAGCGCAATACTATTGCTTCCATTGCTGCTGGTGTACTATTTTTTACAGGCTGGTGGATTATCATAGATGCAGCTGTTATTTATCCCACCATGAAAGATTTCAACCACTCATACCATGCCTGTGGTGTTATAGCAACCATAGCCTTCCTA

CircID chr1:25340474|25343073
ORF Type ORF4
Protein Length 26
Nucleotide Length 81
Protein Sequence MTGGKSAILLLPLLLVYYFLQAGGLS
Nucleotide Sequence TTGACTGGGGGGAAAAGCGCAATACTATTGCTTCCATTGCTGCTGGTGTACTATTTTTTACAGGCTGGTGGATTATCATAG

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr1:25340474|25343073 NOP56 1 0 1
chr1:25340474|25343073 MOV10 1 0 0
chr1:25340474|25343073 ELAVL1 5 2 1
chr1:25340474|25343073 KHDRBS1 1 0 0
chr1:25340474|25343073 PRPF8 0 1 1
chr1:25340474|25343073 UPF1 1 1 0
chr1:25340474|25343073 TNRC6A 0 0 2
chr1:25340474|25343073 FMR1 1 0 3
chr1:25340474|25343073 FUS 0 0 1
chr1:25340474|25343073 GNL3 0 1 1
chr1:25340474|25343073 SRSF1 0 1 3
chr1:25340474|25343073 NOP58 1 1 2
chr1:25340474|25343073 U2AF1 1 0 5
chr1:25340474|25343073 U2AF2 4 4 4
chr1:25340474|25343073 DDX54 0 0 1
chr1:25340474|25343073 PCBP2 0 1 1
chr1:25340474|25343073 HNRNPM 0 0 2
chr1:25340474|25343073 PTBP1 0 0 2
chr1:25340474|25343073 HNRNPD 1 0 0
chr1:25340474|25343073 YWHAG 0 0 1
chr1:25340474|25343073 HNRNPA2B1 0 1 0
chr1:25340474|25343073 DDX3X 2 1 4
chr1:25340474|25343073 ZC3H7B 0 1 1
chr1:25340474|25343073 SMNDC1 0 0 2
chr1:25340474|25343073 MSI2 1 0 0
chr1:25340474|25343073 HNRNPA1 0 4 0
chr1:25340474|25343073 LIN28B 0 1 7
chr1:25340474|25343073 RANGAP1 1 0 0
chr1:25340474|25343073 FXR1 0 0 4
chr1:25340474|25343073 FXR2 1 0 2
chr1:25340474|25343073 SND1 0 0 4
chr1:25340474|25343073 IGF2BP1 0 0 2
chr1:25340474|25343073 BUD13 0 0 1
chr1:25340474|25343073 IGF2BP2 2 1 3
chr1:25340474|25343073 NPM1 0 0 1
chr1:25340474|25343073 HNRNPUL1 1 0 0
chr1:25340474|25343073 TARDBP 1 0 2
chr1:25340474|25343073 TAF15 2 1 3
chr1:25340474|25343073 GTF2F1 0 0 2
chr1:25340474|25343073 RBFOX2 1 0 0
chr1:25340474|25343073 RBM47 1 1 2
chr1:25340474|25343073 SLTM 0 1 3
chr1:25340474|25343073 EIF4G2 1 0 3
chr1:25340474|25343073 DDX42 0 0 1
chr1:25340474|25343073 CSTF2T 1 0 0
chr1:25340474|25343073 NONO 0 0 2
chr1:25340474|25343073 RNF219 0 0 1
chr1:25340474|25343073 XRN2 0 0 1
chr1:25340474|25343073 AGO2 0 0 8
chr1:25340474|25343073 EIF4A3 2 0 2
chr1:25340474|25343073 FBL 1 0 1