CircRNA Information

General Information
circRNA Basic Information
CircID chr1:25817693|25817868
Strand -
CircType exon
Host Gene ENSG00000162430.15;
Algorism CIRI2;
Sequence ATGTGGCTCCAAAGTCTGCATCTGGATTTGGGGGTGTTTTTTGGCATGGCACCCTCACCTCTCTCCCTGCCTGTTTTCCCCAAAGTGGAAAGGAAGGCCTTTCAAACCAGAGTGTCTCACTCCCCTCTGACCTCCAGACCAGATGGGGCATGAGCCAGCCAGCTCAGCCAGGCTCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:25817693|25817868 hsa-miR-149-5p 0 0 1
chr1:25817693|25817868 hsa-miR-149-3p 0 0 1
chr1:25817693|25817868 hsa-miR-185-5p 0 0 1
chr1:25817693|25817868 hsa-miR-185-3p 0 0 1
chr1:25817693|25817868 hsa-miR-488-5p 0 0 1
chr1:25817693|25817868 hsa-miR-488-3p 0 0 1
chr1:25817693|25817868 hsa-miR-558 0 0 1
chr1:25817693|25817868 hsa-miR-570-5p 0 0 1
chr1:25817693|25817868 hsa-miR-570-3p 0 0 1
chr1:25817693|25817868 hsa-miR-940 1 0 1
chr1:25817693|25817868 hsa-miR-1207-5p 1 1 1
chr1:25817693|25817868 hsa-miR-516b 0 0 1
chr1:25817693|25817868 hsa-miR-24 0 0 1
chr1:25817693|25817868 hsa-miR-768-5p 0 0 1
chr1:25817693|25817868 hsa-miR-663a 1 0 0
chr1:25817693|25817868 hsa-miR-762 1 0 0
chr1:25817693|25817868 hsa-miR-2110 1 1 0
chr1:25817693|25817868 hsa-miR-2861 1 0 0
chr1:25817693|25817868 hsa-miR-3142 0 1 0
chr1:25817693|25817868 hsa-miR-3153 1 1 0
chr1:25817693|25817868 hsa-miR-3175 1 1 0
chr1:25817693|25817868 hsa-miR-4270 1 1 0
chr1:25817693|25817868 hsa-miR-4271 1 0 0
chr1:25817693|25817868 hsa-miR-4484 1 0 0
chr1:25817693|25817868 hsa-miR-4487 0 1 0
chr1:25817693|25817868 hsa-miR-4514 1 1 0
chr1:25817693|25817868 hsa-miR-4525 1 0 0
chr1:25817693|25817868 hsa-miR-4533 1 0 0
chr1:25817693|25817868 hsa-miR-4538 1 1 0
chr1:25817693|25817868 hsa-miR-3978 1 0 0
chr1:25817693|25817868 hsa-miR-4663 0 1 0
chr1:25817693|25817868 hsa-miR-4673 1 0 0
chr1:25817693|25817868 hsa-miR-4689 1 0 0
chr1:25817693|25817868 hsa-miR-4692 0 1 0
chr1:25817693|25817868 hsa-miR-4706 1 1 0
chr1:25817693|25817868 hsa-miR-4739 1 1 0
chr1:25817693|25817868 hsa-miR-5572 1 0 0
chr1:25817693|25817868 hsa-miR-5698 1 0 0
chr1:25817693|25817868 hsa-miR-5739 1 0 0
chr1:25817693|25817868 hsa-miR-6090 1 0 0
chr1:25817693|25817868 hsa-miR-6124 1 0 0
chr1:25817693|25817868 hsa-miR-7150 1 1 0
chr1:25817693|25817868 hsa-miR-7703 1 0 0
chr1:25817693|25817868 hsa-miR-8085 1 1 0
chr1:25817693|25817868 hsa-miR-9986 1 0 0
chr1:25817693|25817868 hsa-miR-6857-5p 1 0 0
chr1:25817693|25817868 hsa-miR-6510-5p 0 1 0
chr1:25817693|25817868 hsa-miR-6804-5p 0 1 0
chr1:25817693|25817868 hsa-miR-3622a-5p 1 0 0
chr1:25817693|25817868 hsa-miR-6089 1 0 0
chr1:25817693|25817868 hsa-miR-4695-5p 1 0 0
chr1:25817693|25817868 hsa-miR-6746-5p 1 0 0
chr1:25817693|25817868 hsa-miR-4722-5p 1 0 0
chr1:25817693|25817868 hsa-miR-3064-5p 0 1 0
chr1:25817693|25817868 hsa-miR-6842-3p 0 1 0
chr1:25817693|25817868 hsa-miR-197-5p 1 0 0
chr1:25817693|25817868 hsa-miR-3189-5p 1 1 0
chr1:25817693|25817868 hsa-miR-3663-5p 1 1 0
chr1:25817693|25817868 hsa-miR-6798-5p 1 1 0
chr1:25817693|25817868 hsa-miR-6760-5p 1 1 0
chr1:25817693|25817868 hsa-miR-6782-5p 1 0 0
chr1:25817693|25817868 hsa-miR-7855-5p 1 0 0
chr1:25817693|25817868 hsa-miR-7109-5p 1 0 0
chr1:25817693|25817868 hsa-miR-4640-5p 1 0 0
chr1:25817693|25817868 hsa-miR-5580-5p 0 1 0
chr1:25817693|25817868 hsa-miR-3667-3p 0 1 0
chr1:25817693|25817868 hsa-miR-4787-5p 1 0 0
chr1:25817693|25817868 hsa-miR-3162-5p 1 0 0
chr1:25817693|25817868 hsa-miR-516b-5p 1 1 0
chr1:25817693|25817868 hsa-miR-7112-5p 1 0 0
chr1:25817693|25817868 hsa-miR-7152-3p 1 0 0
chr1:25817693|25817868 hsa-miR-6801-5p 0 1 0
chr1:25817693|25817868 hsa-miR-3140-3p 1 0 0
chr1:25817693|25817868 hsa-miR-6847-3p 0 1 0
chr1:25817693|25817868 hsa-miR-4771 0 1 0
chr1:25817693|25817868 hsa-miR-4763-3p 1 1 0
chr1:25817693|25817868 hsa-miR-6787-5p 1 1 0
chr1:25817693|25817868 hsa-miR-6812-5p 1 0 0
chr1:25817693|25817868 hsa-miR-6870-5p 1 0 0
chr1:25817693|25817868 hsa-miR-6893-5p 1 1 0
chr1:25817693|25817868 hsa-miR-1343-5p 1 0 0
chr1:25817693|25817868 hsa-miR-5001-5p 1 0 0
chr1:25817693|25817868 hsa-miR-6743-5p 1 0 0
chr1:25817693|25817868 hsa-miR-6752-5p 1 0 0
chr1:25817693|25817868 hsa-miR-6754-5p 1 1 0
chr1:25817693|25817868 hsa-miR-6803-5p 1 0 0
chr1:25817693|25817868 hsa-miR-6851-5p 1 0 0
chr1:25817693|25817868 hsa-miR-1249-5p 1 1 0
chr1:25817693|25817868 hsa-miR-6722-3p 1 0 0
chr1:25817693|25817868 hsa-miR-6751-5p 1 0 0
chr1:25817693|25817868 hsa-miR-6763-5p 1 0 0
chr1:25817693|25817868 hsa-miR-6797-5p 1 0 0
chr1:25817693|25817868 hsa-miR-6808-5p 1 1 0
chr1:25817693|25817868 hsa-miR-6879-5p 1 0 0
chr1:25817693|25817868 hsa-miR-7111-5p 1 0 0
chr1:25817693|25817868 hsa-miR-4728-5p 1 0 0
chr1:25817693|25817868 hsa-miR-5196-5p 1 0 0
chr1:25817693|25817868 hsa-miR-6780b-5p 1 1 0
chr1:25817693|25817868 hsa-miR-10396b-5p 1 0 0
chr1:25817693|25817868 hsa-miR-1909-3p 1 0 0
chr1:25817693|25817868 hsa-miR-328-5p 1 0 0
chr1:25817693|25817868 hsa-miR-4725-3p 1 0 0
chr1:25817693|25817868 hsa-miR-6777-5p 1 1 0
chr1:25817693|25817868 hsa-miR-6794-5p 1 0 0
chr1:25817693|25817868 hsa-miR-6795-5p 1 0 0
chr1:25817693|25817868 hsa-miR-6848-5p 1 0 0
chr1:25817693|25817868 hsa-miR-6831-5p 1 0 0
chr1:25817693|25817868 hsa-miR-939-5p 1 0 0
chr1:25817693|25817868 hsa-miR-6511b-5p 1 0 0
chr1:25817693|25817868 hsa-miR-3085-5p 0 1 0
chr1:25817693|25817868 hsa-miR-6731-5p 1 1 0
chr1:25817693|25817868 hsa-miR-6758-5p 1 1 0
chr1:25817693|25817868 hsa-miR-6856-5p 1 1 0
chr1:25817693|25817868 hsa-miR-6891-5p 1 0 0
chr1:25817693|25817868 hsa-miR-4716-3p 1 0 0
chr1:25817693|25817868 hsa-miR-6785-5p 1 0 0
chr1:25817693|25817868 hsa-miR-3085-3p 0 1 0
chr1:25817693|25817868 hsa-miR-3619-5p 1 0 0
chr1:25817693|25817868 hsa-miR-6504-5p 0 1 0
chr1:25817693|25817868 hsa-miR-498-3p 0 1 0
chr1:25817693|25817868 hsa-miR-1245b-5p 0 1 0
chr1:25817693|25817868 hsa-miR-4659a-5p 0 1 0
chr1:25817693|25817868 hsa-miR-4659b-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr1:25817693|25817868
ORF Type ORF1
Protein Length 50
Nucleotide Length 153
Protein Sequence MWLQSLHLDLGVFFGMAPSPLSLPVFPKVERKAFQTRVSHSPLTSRPDGA
Nucleotide Sequence ATGTGGCTCCAAAGTCTGCATCTGGATTTGGGGGTGTTTTTTGGCATGGCACCCTCACCTCTCTCCCTGCCTGTTTTCCCCAAAGTGGAAAGGAAGGCCTTTCAAACCAGAGTGTCTCACTCCCCTCTGACCTCCAGACCAGATGGGGCATGA
CircID chr1:25817693|25817868
ORF Type ORF2
Protein Length 29
Nucleotide Length 90
Protein Sequence MAWHPHLSPCLFSPKWKGRPFKPECLTPL
Nucleotide Sequence TTGGCATGGCACCCTCACCTCTCTCCCTGCCTGTTTTCCCCAAAGTGGAAAGGAAGGCCTTTCAAACCAGAGTGTCTCACTCCCCTCTGA
CircID chr1:25817693|25817868
ORF Type ORF3
Protein Length 27
Nucleotide Length 81
Protein Sequence MGKTGRERGEGAMPKNTPKSRCRLWSH
Nucleotide Sequence TTGGGGAAAACAGGCAGGGAGAGAGGTGAGGGTGCCATGCCAAAAAACACCCCCAAATCCAGATGCAGACTTTGGAGCCAC
CircID chr1:25817693|25817868
ORF Type ORF4
Protein Length 50
Nucleotide Length 150
Protein Sequence MPHLVWRSEGSETLWFERPSFPLWGKQAGREVRVPCQKTPPNPDADFGAT
Nucleotide Sequence ATGCCCCATCTGGTCTGGAGGTCAGAGGGGAGTGAGACACTCTGGTTTGAAAGGCCTTCCTTTCCACTTTGGGGAAAACAGGCAGGGAGAGAGGTGAGGGTGCCATGCCAAAAAACACCCCCAAATCCAGATGCAGACTTTGGAGCCACA
CircID chr1:25817693|25817868
ORF Type ORF5
Protein Length 38
Nucleotide Length 117
Protein Sequence MAELAGSCPIWSGGQRGVRHSGLKGLPFHFGENRQGER
Nucleotide Sequence CTGGCTGAGCTGGCTGGCTCATGCCCCATCTGGTCTGGAGGTCAGAGGGGAGTGAGACACTCTGGTTTGAAAGGCCTTCCTTTCCACTTTGGGGAAAACAGGCAGGGAGAGAGGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab