CircRNA Information

General Information
circRNA Basic Information
CircID chr1:25900191|25900449
Strand +
CircType exon
Host Gene ENSG00000117632.19;
Algorism CIRI2;
Sequence CGCACGTTCTCTGCCCCGTTTCTTGCCCCAGTGTGGTTTGCATTGTCTCCTTCCACAATGACTGCTTTGTTTGGATGCCTCAGCCCAGGTCAGCTGTTACTTTCTTTCAGATGTTTATTTGCAAACAACCATTTTTTGTTCTGTGTCCCTTTTAAAAGGCAGATTAAAAGCACAAGCGTGTTTCTAGAGAACAGTTGAGAGAGAATCTCAAGATTCTACTTGGTGGTTTGCTTGCTCTACGTTACAGGTGGGGCATGTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:25900191|25900449 hsa-miR-31-5p 0 0 1
chr1:25900191|25900449 hsa-miR-31-3p 0 0 1
chr1:25900191|25900449 hsa-miR-526b-5p 0 0 1
chr1:25900191|25900449 hsa-miR-526b-3p 0 0 1
chr1:25900191|25900449 hsa-miR-522-5p 0 0 1
chr1:25900191|25900449 hsa-miR-522-3p 0 0 1
chr1:25900191|25900449 hsa-miR-527 0 0 1
chr1:25900191|25900449 hsa-miR-559 0 0 1
chr1:25900191|25900449 hsa-miR-616-5p 0 0 1
chr1:25900191|25900449 hsa-miR-616-3p 0 0 1
chr1:25900191|25900449 hsa-miR-631 0 0 1
chr1:25900191|25900449 hsa-miR-636 0 0 1
chr1:25900191|25900449 hsa-miR-802 0 0 1
chr1:25900191|25900449 hsa-miR-548j-5p 0 0 1
chr1:25900191|25900449 hsa-miR-548j-3p 0 0 1
chr1:25900191|25900449 hsa-miR-1251-5p 0 0 1
chr1:25900191|25900449 hsa-miR-1251-3p 0 0 1
chr1:25900191|25900449 hsa-miR-1277-5p 0 0 1
chr1:25900191|25900449 hsa-miR-1277-3p 0 0 1
chr1:25900191|25900449 hsa-miR-1827 0 0 1
chr1:25900191|25900449 hsa-miR-486-3p 0 0 1
chr1:25900191|25900449 hsa-miR-330-3p 0 0 1
chr1:25900191|25900449 hsa-miR-1224-3p 0 0 1
chr1:25900191|25900449 hsa-miR-548b-5p 0 0 1
chr1:25900191|25900449 hsa-miR-548d-5p 0 0 1
chr1:25900191|25900449 hsa-miR-518a-5p 0 0 1
chr1:25900191|25900449 hsa-miR-450b-5p 0 0 1
chr1:25900191|25900449 hsa-miR-548c-5p 0 0 1
chr1:25900191|25900449 hsa-miR-548a-5p 0 0 1
chr1:25900191|25900449 hsa-miR-548i 0 0 1
chr1:25900191|25900449 hsa-miR-218 0 0 1
chr1:25900191|25900449 hsa-miR-453 0 0 1
chr1:25900191|25900449 hsa-miR-194 0 0 1
chr1:25900191|25900449 hsa-miR-548h 0 0 1
chr1:25900191|25900449 hsa-miR-612 1 0 0
chr1:25900191|25900449 hsa-miR-637 1 0 0
chr1:25900191|25900449 hsa-miR-646 1 0 0
chr1:25900191|25900449 hsa-miR-762 1 0 0
chr1:25900191|25900449 hsa-miR-1538 1 0 0
chr1:25900191|25900449 hsa-miR-3135a 1 0 0
chr1:25900191|25900449 hsa-miR-3154 1 0 0
chr1:25900191|25900449 hsa-miR-3175 1 0 0
chr1:25900191|25900449 hsa-miR-4271 1 0 0
chr1:25900191|25900449 hsa-miR-4463 1 0 0
chr1:25900191|25900449 hsa-miR-4486 1 0 0
chr1:25900191|25900449 hsa-miR-4489 1 0 0
chr1:25900191|25900449 hsa-miR-1587 1 0 0
chr1:25900191|25900449 hsa-miR-4539 1 0 0
chr1:25900191|25900449 hsa-miR-4656 1 0 0
chr1:25900191|25900449 hsa-miR-4657 1 0 0
chr1:25900191|25900449 hsa-miR-4663 1 0 0
chr1:25900191|25900449 hsa-miR-4689 1 0 0
chr1:25900191|25900449 hsa-miR-4739 1 0 0
chr1:25900191|25900449 hsa-miR-4741 1 0 0
chr1:25900191|25900449 hsa-miR-5787 1 0 0
chr1:25900191|25900449 hsa-miR-6860 1 0 0
chr1:25900191|25900449 hsa-miR-8060 1 0 0
chr1:25900191|25900449 hsa-miR-8089 1 0 0
chr1:25900191|25900449 hsa-miR-9718 1 0 0
chr1:25900191|25900449 hsa-miR-12120 1 0 0
chr1:25900191|25900449 hsa-miR-6809-5p 1 0 0
chr1:25900191|25900449 hsa-miR-7851-3p 1 0 0
chr1:25900191|25900449 hsa-miR-1227-5p 1 0 0
chr1:25900191|25900449 hsa-miR-4695-5p 1 0 0
chr1:25900191|25900449 hsa-miR-1301-3p 1 0 0
chr1:25900191|25900449 hsa-miR-7160-5p 1 0 0
chr1:25900191|25900449 hsa-miR-6890-5p 1 0 0
chr1:25900191|25900449 hsa-miR-6727-5p 1 0 0
chr1:25900191|25900449 hsa-miR-6721-5p 1 0 0
chr1:25900191|25900449 hsa-miR-197-5p 1 0 0
chr1:25900191|25900449 hsa-miR-3189-5p 1 0 0
chr1:25900191|25900449 hsa-miR-3151-5p 1 0 0
chr1:25900191|25900449 hsa-miR-3190-3p 1 0 0
chr1:25900191|25900449 hsa-miR-6881-5p 1 0 0
chr1:25900191|25900449 hsa-miR-6810-5p 1 0 0
chr1:25900191|25900449 hsa-miR-6786-5p 1 0 0
chr1:25900191|25900449 hsa-miR-7109-5p 1 0 0
chr1:25900191|25900449 hsa-miR-185-5p 1 0 0
chr1:25900191|25900449 hsa-miR-4640-5p 1 0 0
chr1:25900191|25900449 hsa-miR-4713-3p 1 0 0
chr1:25900191|25900449 hsa-miR-6749-5p 1 0 0
chr1:25900191|25900449 hsa-miR-6830-5p 1 0 0
chr1:25900191|25900449 hsa-miR-6781-5p 1 0 0
chr1:25900191|25900449 hsa-miR-7112-5p 1 0 0
chr1:25900191|25900449 hsa-miR-4758-3p 1 0 0
chr1:25900191|25900449 hsa-miR-497-3p 1 0 0
chr1:25900191|25900449 hsa-miR-4763-3p 1 0 0
chr1:25900191|25900449 hsa-miR-6778-5p 1 0 0
chr1:25900191|25900449 hsa-miR-6812-5p 1 0 0
chr1:25900191|25900449 hsa-miR-6870-5p 1 0 0
chr1:25900191|25900449 hsa-miR-6775-5p 1 0 0
chr1:25900191|25900449 hsa-miR-5001-5p 1 0 0
chr1:25900191|25900449 hsa-miR-6756-5p 1 0 0
chr1:25900191|25900449 hsa-miR-7107-5p 1 0 0
chr1:25900191|25900449 hsa-miR-1249-5p 1 0 0
chr1:25900191|25900449 hsa-miR-6774-5p 1 0 0
chr1:25900191|25900449 hsa-miR-6797-5p 1 0 0
chr1:25900191|25900449 hsa-miR-6875-5p 1 0 0
chr1:25900191|25900449 hsa-miR-6879-5p 1 0 0
chr1:25900191|25900449 hsa-miR-7111-5p 1 0 0
chr1:25900191|25900449 hsa-miR-3620-5p 1 0 0
chr1:25900191|25900449 hsa-miR-5189-5p 1 0 0
chr1:25900191|25900449 hsa-miR-6780b-5p 1 0 0
chr1:25900191|25900449 hsa-miR-4649-5p 1 0 0
chr1:25900191|25900449 hsa-miR-6729-5p 1 0 0
chr1:25900191|25900449 hsa-miR-4436b-3p 1 0 0
chr1:25900191|25900449 hsa-miR-6845-5p 1 0 0
chr1:25900191|25900449 hsa-miR-3940-5p 1 0 0
chr1:25900191|25900449 hsa-miR-6758-5p 1 0 0
chr1:25900191|25900449 hsa-miR-6856-5p 1 0 0
chr1:25900191|25900449 hsa-miR-4700-5p 1 0 0
chr1:25900191|25900449 hsa-miR-6876-5p 1 0 0
chr1:25900191|25900449 hsa-miR-6750-5p 1 0 0
chr1:25900191|25900449 hsa-miR-4667-5p 1 0 0
chr1:25900191|25900449 hsa-miR-6791-5p 1 0 0
chr1:25900191|25900449 hsa-miR-10400-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr1:25900191|25900449
ORF Type ORF1
Protein Length 51
Nucleotide Length 156
Protein Sequence MSPSTMTALFGCLSPGQLLLSFRCLFANNHFLFCVPFKRQIKSTSVFLENS
Nucleotide Sequence TTGTCTCCTTCCACAATGACTGCTTTGTTTGGATGCCTCAGCCCAGGTCAGCTGTTACTTTCTTTCAGATGTTTATTTGCAAACAACCATTTTTTGTTCTGTGTCCCTTTTAAAAGGCAGATTAAAAGCACAAGCGTGTTTCTAGAGAACAGTTGA
CircID chr1:25900191|25900449
ORF Type ORF2
Protein Length 41
Nucleotide Length 126
Protein Sequence MLCLDASAQVSCYFLSDVYLQTTIFCSVSLLKGRLKAQACF
Nucleotide Sequence CTGCTTTGTTTGGATGCCTCAGCCCAGGTCAGCTGTTACTTTCTTTCAGATGTTTATTTGCAAACAACCATTTTTTGTTCTGTGTCCCTTTTAAAAGGCAGATTAAAAGCACAAGCGTGTTTCTAG
CircID chr1:25900191|25900449
ORF Type ORF3
Protein Length 26
Nucleotide Length 81
Protein Sequence MPQPRSAVTFFQMFICKQPFFVLCPF
Nucleotide Sequence ATGCCTCAGCCCAGGTCAGCTGTTACTTTCTTTCAGATGTTTATTTGCAAACAACCATTTTTTGTTCTGTGTCCCTTTTAA
CircID chr1:25900191|25900449
ORF Type ORF4
Protein Length 31
Nucleotide Length 93
Protein Sequence MTWAEASKQSSHCGRRQCKPHWGKKRGRERA
Nucleotide Sequence CTGACCTGGGCTGAGGCATCCAAACAAAGCAGTCATTGTGGAAGGAGACAATGCAAACCACACTGGGGCAAGAAACGGGGCAGAGAACGTGCG
CircID chr1:25900191|25900449
ORF Type ORF5
Protein Length 34
Nucleotide Length 105
Protein Sequence MFSRNTLVLLICLLKGTQNKKWLFANKHLKESNS
Nucleotide Sequence CTGTTCTCTAGAAACACGCTTGTGCTTTTAATCTGCCTTTTAAAAGGGACACAGAACAAAAAATGGTTGTTTGCAAATAAACATCTGAAAGAAAGTAACAGCTGA
CircID chr1:25900191|25900449
ORF Type ORF6
Protein Length 27
Nucleotide Length 81
Protein Sequence MRHPNKAVIVEGDNANHTGARNGAENV
Nucleotide Sequence CTGAGGCATCCAAACAAAGCAGTCATTGTGGAAGGAGACAATGCAAACCACACTGGGGCAAGAAACGGGGCAGAGAACGTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab