CircRNA Information

General Information
circRNA Basic Information
CircID chr1:26470959|26471082
Strand +
CircType exon
Host Gene ENSG00000117682.15;
Algorism CIRI2;
Sequence CTCTCTGCCTCTTCTTTCCACCACTACATCGCCTCCTGGGGCAGCTTCTCCCTACTCCACCCTGTGTACCTTTCCCAGAATACAGAACCTCAGGCCAAAGAGAGATGCCAGCCCCATTAATCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:26470959|26471082 hsa-miR-22-5p 0 0 1
chr1:26470959|26471082 hsa-miR-22-3p 0 0 1
chr1:26470959|26471082 hsa-miR-630 0 0 1
chr1:26470959|26471082 hsa-miR-665 1 0 1
chr1:26470959|26471082 hsa-miR-548m 0 0 1
chr1:26470959|26471082 hsa-miR-1321 0 0 1
chr1:26470959|26471082 hsa-miR-1827 0 0 1
chr1:26470959|26471082 hsa-miR-140-5p 0 0 1
chr1:26470959|26471082 hsa-miR-324-3p 0 0 1
chr1:26470959|26471082 hsa-miR-142-3p 0 0 1
chr1:26470959|26471082 hsa-miR-220c 0 0 1
chr1:26470959|26471082 hsa-miR-9 0 0 1
chr1:26470959|26471082 hsa-miR-602 1 0 0
chr1:26470959|26471082 hsa-miR-608 1 0 0
chr1:26470959|26471082 hsa-miR-646 1 0 0
chr1:26470959|26471082 hsa-miR-765 1 0 0
chr1:26470959|26471082 hsa-miR-3138 1 0 0
chr1:26470959|26471082 hsa-miR-3153 1 0 0
chr1:26470959|26471082 hsa-miR-3188 1 0 0
chr1:26470959|26471082 hsa-miR-3197 1 0 0
chr1:26470959|26471082 hsa-miR-4298 1 0 0
chr1:26470959|26471082 hsa-miR-3937 1 0 0
chr1:26470959|26471082 hsa-miR-4488 1 0 0
chr1:26470959|26471082 hsa-miR-4672 1 0 0
chr1:26470959|26471082 hsa-miR-4739 1 0 0
chr1:26470959|26471082 hsa-miR-6069 1 0 0
chr1:26470959|26471082 hsa-miR-6086 1 0 0
chr1:26470959|26471082 hsa-miR-6090 1 0 0
chr1:26470959|26471082 hsa-miR-6124 1 0 0
chr1:26470959|26471082 hsa-miR-6745 1 0 0
chr1:26470959|26471082 hsa-miR-8053 1 0 0
chr1:26470959|26471082 hsa-miR-8085 1 0 0
chr1:26470959|26471082 hsa-miR-8089 1 0 0
chr1:26470959|26471082 hsa-miR-12127 1 0 0
chr1:26470959|26471082 hsa-miR-4433b-3p 1 0 0
chr1:26470959|26471082 hsa-miR-4433a-3p 1 0 0
chr1:26470959|26471082 hsa-miR-8071 1 0 0
chr1:26470959|26471082 hsa-miR-139-3p 1 0 0
chr1:26470959|26471082 hsa-miR-3192-5p 1 0 0
chr1:26470959|26471082 hsa-miR-6880-5p 1 0 0
chr1:26470959|26471082 hsa-miR-7847-3p 1 0 0
chr1:26470959|26471082 hsa-miR-4695-5p 1 0 0
chr1:26470959|26471082 hsa-miR-6730-5p 1 0 0
chr1:26470959|26471082 hsa-miR-197-5p 1 0 0
chr1:26470959|26471082 hsa-miR-6742-5p 1 0 0
chr1:26470959|26471082 hsa-miR-6768-5p 1 0 0
chr1:26470959|26471082 hsa-miR-3180-3p 1 0 0
chr1:26470959|26471082 hsa-miR-6796-5p 1 0 0
chr1:26470959|26471082 hsa-miR-185-3p 1 0 0
chr1:26470959|26471082 hsa-miR-6732-5p 1 0 0
chr1:26470959|26471082 hsa-miR-6805-5p 1 0 0
chr1:26470959|26471082 hsa-miR-6782-5p 1 0 0
chr1:26470959|26471082 hsa-miR-6786-5p 1 0 0
chr1:26470959|26471082 hsa-miR-6852-5p 1 0 0
chr1:26470959|26471082 hsa-miR-6740-5p 1 0 0
chr1:26470959|26471082 hsa-miR-204-3p 1 0 0
chr1:26470959|26471082 hsa-miR-1229-5p 1 0 0
chr1:26470959|26471082 hsa-miR-6823-5p 1 0 0
chr1:26470959|26471082 hsa-miR-92b-5p 1 0 0
chr1:26470959|26471082 hsa-miR-7854-3p 1 0 0
chr1:26470959|26471082 hsa-miR-6717-5p 1 0 0
chr1:26470959|26471082 hsa-miR-4727-3p 1 0 0
chr1:26470959|26471082 hsa-miR-6792-5p 1 0 0
chr1:26470959|26471082 hsa-miR-6870-5p 1 0 0
chr1:26470959|26471082 hsa-miR-6752-5p 1 0 0
chr1:26470959|26471082 hsa-miR-6756-5p 1 0 0
chr1:26470959|26471082 hsa-miR-6769a-5p 1 0 0
chr1:26470959|26471082 hsa-miR-6803-5p 1 0 0
chr1:26470959|26471082 hsa-miR-6813-5p 1 0 0
chr1:26470959|26471082 hsa-miR-6819-5p 1 0 0
chr1:26470959|26471082 hsa-miR-6851-5p 1 0 0
chr1:26470959|26471082 hsa-miR-7110-5p 1 0 0
chr1:26470959|26471082 hsa-miR-6797-5p 1 0 0
chr1:26470959|26471082 hsa-miR-6808-5p 1 0 0
chr1:26470959|26471082 hsa-miR-4728-5p 1 0 0
chr1:26470959|26471082 hsa-miR-5196-5p 1 0 0
chr1:26470959|26471082 hsa-miR-6780b-5p 1 0 0
chr1:26470959|26471082 hsa-miR-1237-5p 1 0 0
chr1:26470959|26471082 hsa-miR-4649-5p 1 0 0
chr1:26470959|26471082 hsa-miR-4745-5p 1 0 0
chr1:26470959|26471082 hsa-miR-6848-5p 1 0 0
chr1:26470959|26471082 hsa-miR-6731-5p 1 0 0
chr1:26470959|26471082 hsa-miR-4646-5p 1 0 0
chr1:26470959|26471082 hsa-miR-6750-5p 1 0 0
chr1:26470959|26471082 hsa-miR-1185-1-3p 1 0 0
chr1:26470959|26471082 hsa-miR-1185-2-3p 1 0 0
chr1:26470959|26471082 hsa-miR-6791-5p 1 0 0
chr1:26470959|26471082 hsa-miR-6859-5p 1 0 0
chr1:26470959|26471082 hsa-miR-6817-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr1:26470959|26471082
ORF Type ORF1
Protein Length 40
Nucleotide Length 120
Protein Sequence MPLLSTTTSPPGAASPYSTLCTFPRIQNLRPKRDASPINH
Nucleotide Sequence CTGCCTCTTCTTTCCACCACTACATCGCCTCCTGGGGCAGCTTCTCCCTACTCCACCCTGTGTACCTTTCCCAGAATACAGAACCTCAGGCCAAAGAGAGATGCCAGCCCCATTAATCAC
CircID chr1:26470959|26471082
ORF Type ORF2
Protein Length 29
Nucleotide Length 87
Protein Sequence MGQLLPTPPCVPFPEYRTSGQREMPAPLI
Nucleotide Sequence CTGGGGCAGCTTCTCCCTACTCCACCCTGTGTACCTTTCCCAGAATACAGAACCTCAGGCCAAAGAGAGATGCCAGCCCCATTAATC
CircID chr1:26470959|26471082
ORF Type ORF3
Protein Length 28
Nucleotide Length 84
Protein Sequence MYSGKGTQGGVGRSCPRRRCSGGKKRQR
Nucleotide Sequence CTGTATTCTGGGAAAGGTACACAGGGTGGAGTAGGGAGAAGCTGCCCCAGGAGGCGATGTAGTGGTGGAAAGAAGAGGCAGAGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab