CircRNA Information

General Information
circRNA Basic Information
CircID chr1:26863209|26863397
Strand +
CircType exon
Host Gene ENSG00000175793.11;
Algorism CIRI2;
Sequence AGCACCCTCCAGGCAGCCCTCTGGCCGCCCACCACGTTCTTATAGGCTACTGAGAGCAGGTTTCGCTCTTCGCAGGAGAGCTCCTCGCCCTTCTCCACGGCGCCTTTCATGAAGGCTGCCATGTCCTCATAGCGTTCGGCCTGCTCTGCCAGCTTGGCCTTCTGGATCAGACTGGCTCTCTCCATGGCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:26863209|26863397 hsa-miR-205-5p 0 0 1
chr1:26863209|26863397 hsa-miR-205-3p 0 0 1
chr1:26863209|26863397 hsa-miR-185-5p 0 0 1
chr1:26863209|26863397 hsa-miR-185-3p 0 0 1
chr1:26863209|26863397 hsa-miR-433-5p 0 0 1
chr1:26863209|26863397 hsa-miR-433-3p 0 0 1
chr1:26863209|26863397 hsa-miR-488-5p 0 0 1
chr1:26863209|26863397 hsa-miR-488-3p 0 0 1
chr1:26863209|26863397 hsa-miR-575 0 0 1
chr1:26863209|26863397 hsa-miR-622 0 0 1
chr1:26863209|26863397 hsa-miR-640 0 0 1
chr1:26863209|26863397 hsa-miR-661 0 0 1
chr1:26863209|26863397 hsa-miR-541-5p 0 0 1
chr1:26863209|26863397 hsa-miR-541-3p 0 0 1
chr1:26863209|26863397 hsa-miR-708-5p 0 0 1
chr1:26863209|26863397 hsa-miR-708-3p 0 0 1
chr1:26863209|26863397 hsa-miR-936 0 0 1
chr1:26863209|26863397 hsa-miR-1224-5p 0 0 1
chr1:26863209|26863397 hsa-miR-885-3p 0 0 1
chr1:26863209|26863397 hsa-miR-654-5p 0 0 1
chr1:26863209|26863397 hsa-miR-28-5p 0 0 1
chr1:26863209|26863397 hsa-miR-199b-3p 0 0 1
chr1:26863209|26863397 hsa-miR-199a-3p 0 0 1
chr1:26863209|26863397 hsa-miR-524-3p 0 0 1
chr1:26863209|26863397 hsa-miR-525-3p 0 0 1
chr1:26863209|26863397 hsa-miR-548b-3p 0 0 1
chr1:26863209|26863397 hsa-miR-151-5p 0 0 1
chr1:26863209|26863397 hsa-miR-1254 0 0 1
chr1:26863209|26863397 hsa-miR-663b 1 0 0
chr1:26863209|26863397 hsa-miR-3132 1 0 0
chr1:26863209|26863397 hsa-miR-3137 1 0 0
chr1:26863209|26863397 hsa-miR-3196 1 0 0
chr1:26863209|26863397 hsa-miR-4516 1 0 0
chr1:26863209|26863397 hsa-miR-4644 1 0 0
chr1:26863209|26863397 hsa-miR-4741 1 0 0
chr1:26863209|26863397 hsa-miR-6081 1 0 0
chr1:26863209|26863397 hsa-miR-6125 1 0 0
chr1:26863209|26863397 hsa-miR-12120 1 0 0
chr1:26863209|26863397 hsa-miR-6089 1 0 0
chr1:26863209|26863397 hsa-miR-4695-5p 1 0 0
chr1:26863209|26863397 hsa-miR-3677-5p 1 0 0
chr1:26863209|26863397 hsa-miR-6730-5p 1 0 0
chr1:26863209|26863397 hsa-miR-6759-5p 1 0 0
chr1:26863209|26863397 hsa-miR-6721-5p 1 0 0
chr1:26863209|26863397 hsa-miR-197-5p 1 0 0
chr1:26863209|26863397 hsa-miR-6805-5p 1 0 0
chr1:26863209|26863397 hsa-miR-6821-5p 1 0 0
chr1:26863209|26863397 hsa-miR-1226-5p 1 0 0
chr1:26863209|26863397 hsa-miR-1228-5p 1 0 0
chr1:26863209|26863397 hsa-miR-6501-5p 1 0 0
chr1:26863209|26863397 hsa-miR-4743-5p 1 0 0
chr1:26863209|26863397 hsa-miR-423-5p 1 0 0
chr1:26863209|26863397 hsa-miR-2277-5p 1 0 0
chr1:26863209|26863397 hsa-miR-10400-5p 1 0 0
chr1:26863209|26863397 hsa-miR-1207-5p 1 0 0
chr1:26863209|26863397 hsa-miR-1233-5p 1 0 0
chr1:26863209|26863397 hsa-miR-4763-3p 1 0 0
chr1:26863209|26863397 hsa-miR-6769b-5p 1 0 0
chr1:26863209|26863397 hsa-miR-6737-5p 1 0 0
chr1:26863209|26863397 hsa-miR-6769a-5p 1 0 0
chr1:26863209|26863397 hsa-miR-1249-5p 1 0 0
chr1:26863209|26863397 hsa-miR-6797-5p 1 0 0
chr1:26863209|26863397 hsa-miR-6808-5p 1 0 0
chr1:26863209|26863397 hsa-miR-4649-5p 1 0 0
chr1:26863209|26863397 hsa-miR-4726-5p 1 0 0
chr1:26863209|26863397 hsa-miR-6729-5p 1 0 0
chr1:26863209|26863397 hsa-miR-6831-5p 1 0 0
chr1:26863209|26863397 hsa-miR-3085-5p 1 0 0
chr1:26863209|26863397 hsa-miR-6736-5p 1 0 0
chr1:26863209|26863397 hsa-miR-3679-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr1:26863209|26863397
ORF Type ORF1
Protein Length 61
Nucleotide Length 183
Protein Sequence MERASLIQKAKLAEQAERYEDMAAFMKGAVEKGEELSCEERNLLSVAYKNVVGGQRAAWRV
Nucleotide Sequence ATGGAGAGAGCCAGTCTGATCCAGAAGGCCAAGCTGGCAGAGCAGGCCGAACGCTATGAGGACATGGCAGCCTTCATGAAAGGCGCCGTGGAGAAGGGCGAGGAGCTCTCCTGCGAAGAGCGAAACCTGCTCTCAGTAGCCTATAAGAACGTGGTGGGCGGCCAGAGGGCTGCCTGGAGGGTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab