CircRNA Information

General Information
circRNA Basic Information
CircID chr1:27328173|27328316
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence ACTGCCTGCTTGTGGCCTCAAACACGCCAAATCCTCCCACCCCATGCTTTCTCTGTATCTGCCCTCTCCTCCGTCTGGAACACTCTTCCCAGAGAGCATGGCACAGCTGACTCCTCACTGATTAGGCCTCAGCCTCACTGTCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:27328173|27328316 hsa-miR-326 0 0 1
chr1:27328173|27328316 hsa-miR-608 0 0 1
chr1:27328173|27328316 hsa-miR-765 1 0 1
chr1:27328173|27328316 hsa-miR-1227-5p 0 0 1
chr1:27328173|27328316 hsa-miR-1227-3p 0 0 1
chr1:27328173|27328316 hsa-miR-1304-5p 0 0 1
chr1:27328173|27328316 hsa-miR-1304-3p 0 0 1
chr1:27328173|27328316 hsa-miR-485-5p 0 0 1
chr1:27328173|27328316 hsa-miR-525-5p 0 0 1
chr1:27328173|27328316 hsa-miR-1207-3p 0 0 1
chr1:27328173|27328316 hsa-miR-342-5p 0 0 1
chr1:27328173|27328316 hsa-miR-520a-5p 0 0 1
chr1:27328173|27328316 hsa-miR-330-5p 0 0 1
chr1:27328173|27328316 hsa-miR-542-3p 0 0 1
chr1:27328173|27328316 hsa-miR-762 1 0 0
chr1:27328173|27328316 hsa-miR-298 1 0 0
chr1:27328173|27328316 hsa-miR-3125 1 0 0
chr1:27328173|27328316 hsa-miR-3132 1 0 0
chr1:27328173|27328316 hsa-miR-3141 1 0 0
chr1:27328173|27328316 hsa-miR-3153 1 0 0
chr1:27328173|27328316 hsa-miR-3175 1 0 0
chr1:27328173|27328316 hsa-miR-4253 1 0 0
chr1:27328173|27328316 hsa-miR-3659 1 0 0
chr1:27328173|27328316 hsa-miR-3937 1 0 0
chr1:27328173|27328316 hsa-miR-4462 1 0 0
chr1:27328173|27328316 hsa-miR-4463 1 0 0
chr1:27328173|27328316 hsa-miR-4467 1 0 0
chr1:27328173|27328316 hsa-miR-3689c 1 0 0
chr1:27328173|27328316 hsa-miR-4499 1 0 0
chr1:27328173|27328316 hsa-miR-4533 1 0 0
chr1:27328173|27328316 hsa-miR-4534 1 0 0
chr1:27328173|27328316 hsa-miR-3978 1 0 0
chr1:27328173|27328316 hsa-miR-4644 1 0 0
chr1:27328173|27328316 hsa-miR-4651 1 0 0
chr1:27328173|27328316 hsa-miR-4656 1 0 0
chr1:27328173|27328316 hsa-miR-4688 1 0 0
chr1:27328173|27328316 hsa-miR-4689 1 0 0
chr1:27328173|27328316 hsa-miR-4710 1 0 0
chr1:27328173|27328316 hsa-miR-4721 1 0 0
chr1:27328173|27328316 hsa-miR-4739 1 0 0
chr1:27328173|27328316 hsa-miR-5090 1 0 0
chr1:27328173|27328316 hsa-miR-5192 1 0 0
chr1:27328173|27328316 hsa-miR-5572 1 0 0
chr1:27328173|27328316 hsa-miR-5698 1 0 0
chr1:27328173|27328316 hsa-miR-5787 1 0 0
chr1:27328173|27328316 hsa-miR-6069 1 0 0
chr1:27328173|27328316 hsa-miR-6133 1 0 0
chr1:27328173|27328316 hsa-miR-8055 1 0 0
chr1:27328173|27328316 hsa-miR-8089 1 0 0
chr1:27328173|27328316 hsa-miR-211-3p 1 0 0
chr1:27328173|27328316 hsa-miR-4433b-3p 1 0 0
chr1:27328173|27328316 hsa-miR-6734-5p 1 0 0
chr1:27328173|27328316 hsa-miR-6747-5p 1 0 0
chr1:27328173|27328316 hsa-miR-6765-5p 1 0 0
chr1:27328173|27328316 hsa-miR-7106-5p 1 0 0
chr1:27328173|27328316 hsa-miR-6825-5p 1 0 0
chr1:27328173|27328316 hsa-miR-6894-5p 1 0 0
chr1:27328173|27328316 hsa-miR-25-5p 1 0 0
chr1:27328173|27328316 hsa-miR-6799-5p 1 0 0
chr1:27328173|27328316 hsa-miR-766-5p 1 0 0
chr1:27328173|27328316 hsa-miR-6089 1 0 0
chr1:27328173|27328316 hsa-miR-3192-5p 1 0 0
chr1:27328173|27328316 hsa-miR-6757-5p 1 0 0
chr1:27328173|27328316 hsa-miR-6873-5p 1 0 0
chr1:27328173|27328316 hsa-miR-4695-5p 1 0 0
chr1:27328173|27328316 hsa-miR-7160-5p 1 0 0
chr1:27328173|27328316 hsa-miR-6890-5p 1 0 0
chr1:27328173|27328316 hsa-miR-6820-5p 1 0 0
chr1:27328173|27328316 hsa-miR-6806-5p 1 0 0
chr1:27328173|27328316 hsa-miR-6721-5p 1 0 0
chr1:27328173|27328316 hsa-miR-197-5p 1 0 0
chr1:27328173|27328316 hsa-miR-7845-5p 1 0 0
chr1:27328173|27328316 hsa-miR-6742-5p 1 0 0
chr1:27328173|27328316 hsa-miR-1292-5p 1 0 0
chr1:27328173|27328316 hsa-miR-6732-5p 1 0 0
chr1:27328173|27328316 hsa-miR-6805-5p 1 0 0
chr1:27328173|27328316 hsa-miR-6798-5p 1 0 0
chr1:27328173|27328316 hsa-miR-486-3p 1 0 0
chr1:27328173|27328316 hsa-miR-2467-3p 1 0 0
chr1:27328173|27328316 hsa-miR-6782-5p 1 0 0
chr1:27328173|27328316 hsa-miR-7109-5p 1 0 0
chr1:27328173|27328316 hsa-miR-1226-5p 1 0 0
chr1:27328173|27328316 hsa-miR-877-5p 1 0 0
chr1:27328173|27328316 hsa-miR-6847-5p 1 0 0
chr1:27328173|27328316 hsa-miR-149-3p 1 0 0
chr1:27328173|27328316 hsa-miR-3616-3p 1 0 0
chr1:27328173|27328316 hsa-miR-6824-5p 1 0 0
chr1:27328173|27328316 hsa-miR-744-5p 1 0 0
chr1:27328173|27328316 hsa-miR-483-5p 1 0 0
chr1:27328173|27328316 hsa-miR-5004-5p 1 0 0
chr1:27328173|27328316 hsa-miR-1207-5p 1 0 0
chr1:27328173|27328316 hsa-miR-1233-5p 1 0 0
chr1:27328173|27328316 hsa-miR-1273h-5p 1 0 0
chr1:27328173|27328316 hsa-miR-3689b-3p 1 0 0
chr1:27328173|27328316 hsa-miR-4763-3p 1 0 0
chr1:27328173|27328316 hsa-miR-6769b-5p 1 0 0
chr1:27328173|27328316 hsa-miR-6778-5p 1 0 0
chr1:27328173|27328316 hsa-miR-6787-5p 1 0 0
chr1:27328173|27328316 hsa-miR-6812-5p 1 0 0
chr1:27328173|27328316 hsa-miR-6816-5p 1 0 0
chr1:27328173|27328316 hsa-miR-6870-5p 1 0 0
chr1:27328173|27328316 hsa-miR-6893-5p 1 0 0
chr1:27328173|27328316 hsa-miR-1343-5p 1 0 0
chr1:27328173|27328316 hsa-miR-6737-5p 1 0 0
chr1:27328173|27328316 hsa-miR-6743-5p 1 0 0
chr1:27328173|27328316 hsa-miR-6756-5p 1 0 0
chr1:27328173|27328316 hsa-miR-6813-5p 1 0 0
chr1:27328173|27328316 hsa-miR-6819-5p 1 0 0
chr1:27328173|27328316 hsa-miR-10401-5p 1 0 0
chr1:27328173|27328316 hsa-miR-11181-3p 1 0 0
chr1:27328173|27328316 hsa-miR-1249-5p 1 0 0
chr1:27328173|27328316 hsa-miR-6751-5p 1 0 0
chr1:27328173|27328316 hsa-miR-6779-5p 1 0 0
chr1:27328173|27328316 hsa-miR-6780a-5p 1 0 0
chr1:27328173|27328316 hsa-miR-6797-5p 1 0 0
chr1:27328173|27328316 hsa-miR-6808-5p 1 0 0
chr1:27328173|27328316 hsa-miR-6879-5p 1 0 0
chr1:27328173|27328316 hsa-miR-7111-5p 1 0 0
chr1:27328173|27328316 hsa-miR-3620-5p 1 0 0
chr1:27328173|27328316 hsa-miR-4728-5p 1 0 0
chr1:27328173|27328316 hsa-miR-5196-5p 1 0 0
chr1:27328173|27328316 hsa-miR-6780b-5p 1 0 0
chr1:27328173|27328316 hsa-miR-4632-5p 1 0 0
chr1:27328173|27328316 hsa-miR-4649-5p 1 0 0
chr1:27328173|27328316 hsa-miR-4726-5p 1 0 0
chr1:27328173|27328316 hsa-miR-6729-5p 1 0 0
chr1:27328173|27328316 hsa-miR-6735-5p 1 0 0
chr1:27328173|27328316 hsa-miR-6795-5p 1 0 0
chr1:27328173|27328316 hsa-miR-6846-5p 1 0 0
chr1:27328173|27328316 hsa-miR-6848-5p 1 0 0
chr1:27328173|27328316 hsa-miR-6883-5p 1 0 0
chr1:27328173|27328316 hsa-miR-6887-5p 1 0 0
chr1:27328173|27328316 hsa-miR-4723-5p 1 0 0
chr1:27328173|27328316 hsa-miR-6831-5p 1 0 0
chr1:27328173|27328316 hsa-miR-6845-5p 1 0 0
chr1:27328173|27328316 hsa-miR-30c-1-3p 1 0 0
chr1:27328173|27328316 hsa-miR-6731-5p 1 0 0
chr1:27328173|27328316 hsa-miR-6856-5p 1 0 0
chr1:27328173|27328316 hsa-miR-3679-5p 1 0 0
chr1:27328173|27328316 hsa-miR-4646-5p 1 0 0
chr1:27328173|27328316 hsa-miR-6891-5p 1 0 0
chr1:27328173|27328316 hsa-miR-6766-5p 1 0 0
chr1:27328173|27328316 hsa-miR-6785-5p 1 0 0
chr1:27328173|27328316 hsa-miR-6859-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr1:27328173|27328316
ORF Type ORF1
Protein Length 45
Nucleotide Length 135
Protein Sequence MWPQTRQILPPHAFSVSALSSVWNTLPREHGTADSSLIRPQPHCH
Nucleotide Sequence TTGTGGCCTCAAACACGCCAAATCCTCCCACCCCATGCTTTCTCTGTATCTGCCCTCTCCTCCGTCTGGAACACTCTTCCCAGAGAGCATGGCACAGCTGACTCCTCACTGATTAGGCCTCAGCCTCACTGTCAC
CircID chr1:27328173|27328316
ORF Type ORF2
Protein Length 39
Nucleotide Length 120
Protein Sequence LPACGLKHAKSSHPMLSLYLPSPPSGTLFPESMAQLTPH
Nucleotide Sequence CTGCCTGCTTGTGGCCTCAAACACGCCAAATCCTCCCACCCCATGCTTTCTCTGTATCTGCCCTCTCCTCCGTCTGGAACACTCTTCCCAGAGAGCATGGCACAGCTGACTCCTCACTGA
CircID chr1:27328173|27328316
ORF Type ORF3
Protein Length 34
Nucleotide Length 105
Protein Sequence MLVASNTPNPPTPCFLCICPLLRLEHSSQRAWHS
Nucleotide Sequence CTGCTTGTGGCCTCAAACACGCCAAATCCTCCCACCCCATGCTTTCTCTGTATCTGCCCTCTCCTCCGTCTGGAACACTCTTCCCAGAGAGCATGGCACAGCTGA
CircID chr1:27328173|27328316
ORF Type ORF4
Protein Length 33
Nucleotide Length 99
Protein Sequence MLSGKSVPDGGEGRYRESMGWEDLACLRPQAGS
Nucleotide Sequence ATGCTCTCTGGGAAGAGTGTTCCAGACGGAGGAGAGGGCAGATACAGAGAAAGCATGGGGTGGGAGGATTTGGCGTGTTTGAGGCCACAAGCAGGCAGT
CircID chr1:27328173|27328316
ORF Type ORF5
Protein Length 35
Nucleotide Length 105
Protein Sequence MCHALWEECSRRRRGQIQRKHGVGGFGVFEATSRQ
Nucleotide Sequence CTGTGCCATGCTCTCTGGGAAGAGTGTTCCAGACGGAGGAGAGGGCAGATACAGAGAAAGCATGGGGTGGGAGGATTTGGCGTGTTTGAGGCCACAAGCAGGCAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab