CircRNA Information

General Information
circRNA Basic Information
CircID chr1:27972485|27972701
Strand -
CircType exon
Host Gene ENSG00000158161.14;
Algorism CIRI2;
Sequence CAGCCTCTCTCTCTTGCTATCTGGGTGGCCTGGCATTGGAAGGAGTCTTGCCTCTTTGTGCTGCAACATCTCTGGAAATGGGTATGCAGAATCTCTGGTGACAAGCAATTATAGCTGGGGTTGGTCAACAATGCCTCCTTCTGCGGACCAATCCTGCATCTCAATCTGAGGTGCTTGTATCATCTCTCTCTGTGTAGCCTGGGAGAGGCTGAACTTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:27972485|27972701 hsa-miR-31-5p 0 0 1
chr1:27972485|27972701 hsa-miR-31-3p 0 0 1
chr1:27972485|27972701 hsa-miR-107 0 0 1
chr1:27972485|27972701 hsa-miR-143-5p 0 0 1
chr1:27972485|27972701 hsa-miR-143-3p 0 0 1
chr1:27972485|27972701 hsa-miR-150-5p 0 0 1
chr1:27972485|27972701 hsa-miR-150-3p 0 0 1
chr1:27972485|27972701 hsa-miR-381-5p 0 0 1
chr1:27972485|27972701 hsa-miR-381-3p 0 0 1
chr1:27972485|27972701 hsa-miR-133b 0 0 1
chr1:27972485|27972701 hsa-miR-583 0 0 1
chr1:27972485|27972701 hsa-miR-650 0 0 1
chr1:27972485|27972701 hsa-miR-653-5p 0 0 1
chr1:27972485|27972701 hsa-miR-653-3p 0 0 1
chr1:27972485|27972701 hsa-miR-660-5p 0 0 1
chr1:27972485|27972701 hsa-miR-660-3p 0 0 1
chr1:27972485|27972701 hsa-miR-1301-5p 0 0 1
chr1:27972485|27972701 hsa-miR-1301-3p 0 0 1
chr1:27972485|27972701 hsa-miR-298 0 0 1
chr1:27972485|27972701 hsa-miR-300 0 0 1
chr1:27972485|27972701 hsa-miR-1226-5p 0 0 1
chr1:27972485|27972701 hsa-miR-1226-3p 0 0 1
chr1:27972485|27972701 hsa-miR-1286 0 0 1
chr1:27972485|27972701 hsa-miR-1256 0 0 1
chr1:27972485|27972701 hsa-miR-302f 0 0 1
chr1:27972485|27972701 hsa-miR-532-3p 0 0 1
chr1:27972485|27972701 hsa-miR-485-5p 0 0 1
chr1:27972485|27972701 hsa-miR-525-5p 0 0 1
chr1:27972485|27972701 hsa-miR-509-3p 0 0 1
chr1:27972485|27972701 hsa-miR-520a-5p 0 0 1
chr1:27972485|27972701 hsa-miR-103 0 0 1
chr1:27972485|27972701 hsa-miR-544 0 0 1
chr1:27972485|27972701 hsa-miR-133a 0 0 1
chr1:27972485|27972701 hsa-miR-3937 1 0 0
chr1:27972485|27972701 hsa-miR-4449 1 0 0
chr1:27972485|27972701 hsa-miR-6088 1 0 0
chr1:27972485|27972701 hsa-miR-3194-5p 1 0 0
chr1:27972485|27972701 hsa-miR-584-3p 1 0 0
chr1:27972485|27972701 hsa-miR-6743-5p 1 0 0
chr1:27972485|27972701 hsa-miR-4685-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr1:27972485|27972701
ORF Type ORF1
Protein Length 34
Nucleotide Length 102
Protein Sequence MGLVNNASFCGPILHLNLRCLYHLSLCSLGEAEL
Nucleotide Sequence CTGGGGTTGGTCAACAATGCCTCCTTCTGCGGACCAATCCTGCATCTCAATCTGAGGTGCTTGTATCATCTCTCTCTGTGTAGCCTGGGAGAGGCTGAACTT
CircID chr1:27972485|27972701
ORF Type ORF2
Protein Length 51
Nucleotide Length 156
Protein Sequence MLSGWPGIGRSLASLCCNISGNGYAESLVTSNYSWGWSTMPPSADQSCISI
Nucleotide Sequence TTGCTATCTGGGTGGCCTGGCATTGGAAGGAGTCTTGCCTCTTTGTGCTGCAACATCTCTGGAAATGGGTATGCAGAATCTCTGGTGACAAGCAATTATAGCTGGGGTTGGTCAACAATGCCTCCTTCTGCGGACCAATCCTGCATCTCAATCTGA
CircID chr1:27972485|27972701
ORF Type ORF3
Protein Length 26
Nucleotide Length 81
Protein Sequence MGGLALEGVLPLCAATSLEMGMQNLW
Nucleotide Sequence CTGGGTGGCCTGGCATTGGAAGGAGTCTTGCCTCTTTGTGCTGCAACATCTCTGGAAATGGGTATGCAGAATCTCTGGTGA
CircID chr1:27972485|27972701
ORF Type ORF4
Protein Length 36
Nucleotide Length 108
Protein Sequence MLVTRDSAYPFPEMLQHKEARLLPMPGHPDSKRERL
Nucleotide Sequence TTGCTTGTCACCAGAGATTCTGCATACCCATTTCCAGAGATGTTGCAGCACAAAGAGGCAAGACTCCTTCCAATGCCAGGCCACCCAGATAGCAAGAGAGAGAGGCTG
CircID chr1:27972485|27972701
ORF Type ORF5
Protein Length 54
Nucleotide Length 162
Protein Sequence MRCRIGPQKEALLTNPSYNCLSPEILHTHFQRCCSTKRQDSFQCQATQIARERG
Nucleotide Sequence TTGAGATGCAGGATTGGTCCGCAGAAGGAGGCATTGTTGACCAACCCCAGCTATAATTGCTTGTCACCAGAGATTCTGCATACCCATTTCCAGAGATGTTGCAGCACAAAGAGGCAAGACTCCTTCCAATGCCAGGCCACCCAGATAGCAAGAGAGAGAGGC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab