CircRNA Information

General Information
circRNA Basic Information
CircID chr1:28149902|28150112
Strand +
CircType exon
Host Gene ENSG00000169403.10;
Algorism CIRI2;
Sequence CTCACCGAAAAGTTCTACAGCATGCGCAGTAGCCGGAAATGCTCCCGGGCCACCACGGATACGGTCACTGAAGTGGTTGTGCCATTCAACCAGATCCCTGGCAATTCCCTCAAAAATTAGTCCCTGCTTCCAGGCCTGAAGTCTTCTCCTCCATGAACATCATGGACTGAGCTGGGGGAAGAAGGGATATCTACTGTGGTCTGGGCACCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:28149902|28150112 hsa-miR-183-5p 0 0 1
chr1:28149902|28150112 hsa-miR-183-3p 0 0 1
chr1:28149902|28150112 hsa-miR-563 0 0 1
chr1:28149902|28150112 hsa-miR-765 1 1 1
chr1:28149902|28150112 hsa-miR-936 0 0 1
chr1:28149902|28150112 hsa-miR-1180-5p 0 0 1
chr1:28149902|28150112 hsa-miR-1180-3p 0 0 1
chr1:28149902|28150112 hsa-miR-1202 0 0 1
chr1:28149902|28150112 hsa-miR-663b 1 1 1
chr1:28149902|28150112 hsa-miR-1206 0 0 1
chr1:28149902|28150112 hsa-miR-1304-5p 0 0 1
chr1:28149902|28150112 hsa-miR-1304-3p 0 0 1
chr1:28149902|28150112 hsa-miR-1248 0 1 1
chr1:28149902|28150112 hsa-miR-1253 0 1 1
chr1:28149902|28150112 hsa-miR-671-5p 0 0 1
chr1:28149902|28150112 hsa-miR-361-3p 0 1 1
chr1:28149902|28150112 hsa-miR-490-5p 0 0 1
chr1:28149902|28150112 hsa-miR-188-5p 0 0 1
chr1:28149902|28150112 hsa-miR-140-3p 0 0 1
chr1:28149902|28150112 hsa-miR-455-3p 0 1 1
chr1:28149902|28150112 hsa-miR-590-3p 0 0 1
chr1:28149902|28150112 hsa-miR-1254 0 0 1
chr1:28149902|28150112 hsa-miR-637 0 1 0
chr1:28149902|28150112 hsa-miR-638 1 0 0
chr1:28149902|28150112 hsa-miR-661 1 0 0
chr1:28149902|28150112 hsa-miR-1268a 1 0 0
chr1:28149902|28150112 hsa-miR-1538 1 0 0
chr1:28149902|28150112 hsa-miR-2861 1 0 0
chr1:28149902|28150112 hsa-miR-4267 0 1 0
chr1:28149902|28150112 hsa-miR-1268b 1 0 0
chr1:28149902|28150112 hsa-miR-4449 1 0 0
chr1:28149902|28150112 hsa-miR-4516 0 1 0
chr1:28149902|28150112 hsa-miR-4706 1 0 0
chr1:28149902|28150112 hsa-miR-4739 1 0 0
chr1:28149902|28150112 hsa-miR-4784 1 0 0
chr1:28149902|28150112 hsa-miR-5190 0 1 0
chr1:28149902|28150112 hsa-miR-6079 0 1 0
chr1:28149902|28150112 hsa-miR-6081 1 0 0
chr1:28149902|28150112 hsa-miR-6085 1 0 0
chr1:28149902|28150112 hsa-miR-6132 1 0 0
chr1:28149902|28150112 hsa-miR-8073 1 0 0
chr1:28149902|28150112 hsa-miR-8085 1 0 0
chr1:28149902|28150112 hsa-miR-8087 0 1 0
chr1:28149902|28150112 hsa-miR-12118 1 0 0
chr1:28149902|28150112 hsa-miR-150-3p 1 0 0
chr1:28149902|28150112 hsa-miR-323a-5p 1 1 0
chr1:28149902|28150112 hsa-miR-7106-5p 1 0 0
chr1:28149902|28150112 hsa-miR-6894-5p 1 0 0
chr1:28149902|28150112 hsa-miR-7847-3p 1 0 0
chr1:28149902|28150112 hsa-miR-6746-5p 1 0 0
chr1:28149902|28150112 hsa-miR-6875-3p 0 1 0
chr1:28149902|28150112 hsa-miR-7845-5p 1 0 0
chr1:28149902|28150112 hsa-miR-6821-5p 1 0 0
chr1:28149902|28150112 hsa-miR-1226-5p 1 0 0
chr1:28149902|28150112 hsa-miR-6784-5p 1 0 0
chr1:28149902|28150112 hsa-miR-4640-5p 1 0 0
chr1:28149902|28150112 hsa-miR-6749-5p 1 1 0
chr1:28149902|28150112 hsa-miR-6834-5p 0 1 0
chr1:28149902|28150112 hsa-miR-6720-3p 1 0 0
chr1:28149902|28150112 hsa-miR-4778-3p 0 1 0
chr1:28149902|28150112 hsa-miR-6792-5p 1 0 0
chr1:28149902|28150112 hsa-miR-5088-3p 0 1 0
chr1:28149902|28150112 hsa-miR-2277-5p 1 0 0
chr1:28149902|28150112 hsa-miR-4790-3p 0 1 0
chr1:28149902|28150112 hsa-miR-1207-5p 1 0 0
chr1:28149902|28150112 hsa-miR-4763-3p 1 0 0
chr1:28149902|28150112 hsa-miR-5001-5p 1 0 0
chr1:28149902|28150112 hsa-miR-6754-5p 1 0 0
chr1:28149902|28150112 hsa-miR-6813-5p 1 0 0
chr1:28149902|28150112 hsa-miR-7107-5p 1 0 0
chr1:28149902|28150112 hsa-miR-11181-3p 1 1 0
chr1:28149902|28150112 hsa-miR-6722-3p 1 0 0
chr1:28149902|28150112 hsa-miR-6751-5p 1 0 0
chr1:28149902|28150112 hsa-miR-6797-5p 1 0 0
chr1:28149902|28150112 hsa-miR-7111-5p 1 0 0
chr1:28149902|28150112 hsa-miR-4685-3p 0 1 0
chr1:28149902|28150112 hsa-miR-6866-3p 0 1 0
chr1:28149902|28150112 hsa-miR-4728-5p 1 0 0
chr1:28149902|28150112 hsa-miR-6780b-5p 1 1 0
chr1:28149902|28150112 hsa-miR-6862-5p 1 0 0
chr1:28149902|28150112 hsa-miR-1909-3p 1 0 0
chr1:28149902|28150112 hsa-miR-4725-3p 1 0 0
chr1:28149902|28150112 hsa-miR-4745-3p 1 1 0
chr1:28149902|28150112 hsa-miR-4749-5p 1 0 0
chr1:28149902|28150112 hsa-miR-6887-5p 1 0 0
chr1:28149902|28150112 hsa-miR-6885-5p 1 0 0
chr1:28149902|28150112 hsa-miR-3116 1 1 0
chr1:28149902|28150112 hsa-miR-3173-3p 1 0 0
chr1:28149902|28150112 hsa-miR-376b-5p 0 1 0
chr1:28149902|28150112 hsa-miR-376c-5p 0 1 0
chr1:28149902|28150112 hsa-miR-5197-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr1:28149902|28150112
ORF Type ORF1
Protein Length 32
Nucleotide Length 99
Protein Sequence MRSSRKCSRATTDTVTEVVVPFNQIPGNSLKN
Nucleotide Sequence ATGCGCAGTAGCCGGAAATGCTCCCGGGCCACCACGGATACGGTCACTGAAGTGGTTGTGCCATTCAACCAGATCCCTGGCAATTCCCTCAAAAATTAG
CircID chr1:28149902|28150112
ORF Type ORF2
Protein Length 31
Nucleotide Length 93
Protein Sequence MVEWHNHFSDRIRGGPGAFPATAHAVELFGE
Nucleotide Sequence CTGGTTGAATGGCACAACCACTTCAGTGACCGTATCCGTGGTGGCCCGGGAGCATTTCCGGCTACTGCGCATGCTGTAGAACTTTTCGGTGAG
CircID chr1:28149902|28150112
ORF Type ORF3
Protein Length 32
Nucleotide Length 99
Protein Sequence MRELPGIWLNGTTTSVTVSVVAREHFRLLRML
Nucleotide Sequence TTGAGGGAATTGCCAGGGATCTGGTTGAATGGCACAACCACTTCAGTGACCGTATCCGTGGTGGCCCGGGAGCATTTCCGGCTACTGCGCATGCTGTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab