CircRNA Information

General Information
circRNA Basic Information
CircID chr1:28273130|28273301
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence AGATACTTTAAAAATTCCTGCTCAGGGAAGATGTGTCTATTCTGTAGCTTTGTAAACGTCACTTTAGGAAGCACAGACCCCATGTGCTGTCCAGCACAGTGGCTGGCACAGAGGATGCCCTGGGCCTTTGTGAGCATTAGGAAGGCCTGGCCTCTGGGAAGGATGAGTGGAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:28273130|28273301 hsa-miR-17-5p 0 0 1
chr1:28273130|28273301 hsa-miR-17-3p 0 0 1
chr1:28273130|28273301 hsa-miR-20a-5p 0 0 1
chr1:28273130|28273301 hsa-miR-20a-3p 0 0 1
chr1:28273130|28273301 hsa-miR-93-5p 0 0 1
chr1:28273130|28273301 hsa-miR-93-3p 0 0 1
chr1:28273130|28273301 hsa-miR-106a-5p 0 0 1
chr1:28273130|28273301 hsa-miR-106a-3p 0 0 1
chr1:28273130|28273301 hsa-miR-155-5p 0 0 1
chr1:28273130|28273301 hsa-miR-155-3p 0 0 1
chr1:28273130|28273301 hsa-miR-106b-5p 0 0 1
chr1:28273130|28273301 hsa-miR-106b-3p 0 0 1
chr1:28273130|28273301 hsa-miR-20b-5p 0 0 1
chr1:28273130|28273301 hsa-miR-20b-3p 0 0 1
chr1:28273130|28273301 hsa-miR-519d-5p 0 0 1
chr1:28273130|28273301 hsa-miR-519d-3p 0 0 1
chr1:28273130|28273301 hsa-miR-559 0 0 1
chr1:28273130|28273301 hsa-miR-636 0 0 1
chr1:28273130|28273301 hsa-miR-1178-5p 0 0 1
chr1:28273130|28273301 hsa-miR-1178-3p 0 0 1
chr1:28273130|28273301 hsa-miR-1227-5p 0 0 1
chr1:28273130|28273301 hsa-miR-1227-3p 0 0 1
chr1:28273130|28273301 hsa-miR-1202 0 1 1
chr1:28273130|28273301 hsa-miR-548j-5p 0 0 1
chr1:28273130|28273301 hsa-miR-548j-3p 0 0 1
chr1:28273130|28273301 hsa-miR-1287-5p 0 0 1
chr1:28273130|28273301 hsa-miR-1287-3p 0 0 1
chr1:28273130|28273301 hsa-miR-548k 0 0 1
chr1:28273130|28273301 hsa-miR-548l 0 0 1
chr1:28273130|28273301 hsa-miR-615-5p 0 0 1
chr1:28273130|28273301 hsa-miR-524-5p 0 0 1
chr1:28273130|28273301 hsa-miR-125a-5p 0 0 1
chr1:28273130|28273301 hsa-miR-548b-5p 0 0 1
chr1:28273130|28273301 hsa-miR-548d-5p 0 0 1
chr1:28273130|28273301 hsa-miR-516a-3p 0 0 1
chr1:28273130|28273301 hsa-miR-520d-5p 0 0 1
chr1:28273130|28273301 hsa-miR-548c-5p 0 0 1
chr1:28273130|28273301 hsa-miR-548a-5p 0 0 1
chr1:28273130|28273301 hsa-miR-548i 0 0 1
chr1:28273130|28273301 hsa-miR-1274a 0 0 1
chr1:28273130|28273301 hsa-miR-125b 0 0 1
chr1:28273130|28273301 hsa-miR-218 0 0 1
chr1:28273130|28273301 hsa-miR-548h 0 0 1
chr1:28273130|28273301 hsa-miR-612 0 1 0
chr1:28273130|28273301 hsa-miR-3142 0 1 0
chr1:28273130|28273301 hsa-miR-4319 0 1 0
chr1:28273130|28273301 hsa-miR-4252 0 1 0
chr1:28273130|28273301 hsa-miR-3972 0 1 0
chr1:28273130|28273301 hsa-miR-4747-3p 0 1 0
chr1:28273130|28273301 hsa-miR-3194-5p 1 1 0
chr1:28273130|28273301 hsa-miR-4691-3p 0 1 0
chr1:28273130|28273301 hsa-miR-3667-3p 0 1 0
chr1:28273130|28273301 hsa-miR-4717-3p 0 1 0
chr1:28273130|28273301 hsa-miR-6768-3p 0 1 0
chr1:28273130|28273301 hsa-miR-642b-3p 0 1 0
chr1:28273130|28273301 hsa-miR-1909-3p 1 0 0
chr1:28273130|28273301 hsa-miR-3187-5p 0 1 0
chr1:28273130|28273301 hsa-miR-5008-3p 0 1 0
chr1:28273130|28273301 hsa-miR-6529-3p 0 1 0
chr1:28273130|28273301 hsa-miR-6764-5p 0 1 0
chr1:28273130|28273301 hsa-miR-642a-3p 0 1 0
chr1:28273130|28273301 hsa-miR-6737-3p 0 1 0
chr1:28273130|28273301 hsa-miR-7157-3p 0 1 0
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


circRNA Open Reading Frame (ORF)
CircID chr1:28273130|28273301
ORF Type ORF1
Protein Length 47
Nucleotide Length 141
Protein Sequence MCLFCSFVNVTLGSTDPMCCPAQWLAQRMPWAFVSIRKAWPLGRMSG
Nucleotide Sequence ATGTGTCTATTCTGTAGCTTTGTAAACGTCACTTTAGGAAGCACAGACCCCATGTGCTGTCCAGCACAGTGGCTGGCACAGAGGATGCCCTGGGCCTTTGTGAGCATTAGGAAGGCCTGGCCTCTGGGAAGGATGAGTGGA

CircID chr1:28273130|28273301
ORF Type ORF2
Protein Length 45
Nucleotide Length 135
Protein Sequence MLTKAQGILCASHCAGQHMGSVLPKVTFTKLQNRHIFPEQEFLKY
Nucleotide Sequence ATGCTCACAAAGGCCCAGGGCATCCTCTGTGCCAGCCACTGTGCTGGACAGCACATGGGGTCTGTGCTTCCTAAAGTGACGTTTACAAAGCTACAGAATAGACACATCTTCCCTGAGCAGGAATTTTTAAAGTAT

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites