CircRNA Information

General Information
circRNA Basic Information
CircID chr1:28281657|28281806
Strand +
CircType exon
Host Gene ENSG00000130766.4;
Algorism CIRI2;
Sequence CTGGCCATGGCCCAGGGGCAGGGTCCAAACAAGAACCCTGGTGCCTCCCGCCCCTCCTGCTGAGCCATGGTGCCACCTAAGCCATCTAGAAAGGCTCAACTTTTTGGGAGACATCTGCGGCAGGGCCACTGGAGGCAGGAGAGTGGGGTG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:28281657|28281806 hsa-miR-214-5p 0 0 1
chr1:28281657|28281806 hsa-miR-214-3p 0 0 1
chr1:28281657|28281806 hsa-miR-150-5p 0 0 1
chr1:28281657|28281806 hsa-miR-150-3p 0 0 1
chr1:28281657|28281806 hsa-miR-328-5p 0 0 1
chr1:28281657|28281806 hsa-miR-328-3p 0 0 1
chr1:28281657|28281806 hsa-miR-135b-5p 0 0 1
chr1:28281657|28281806 hsa-miR-135b-3p 0 0 1
chr1:28281657|28281806 hsa-miR-504-5p 0 0 1
chr1:28281657|28281806 hsa-miR-504-3p 0 0 1
chr1:28281657|28281806 hsa-miR-578 0 0 1
chr1:28281657|28281806 hsa-miR-650 0 0 1
chr1:28281657|28281806 hsa-miR-922 0 0 1
chr1:28281657|28281806 hsa-miR-663b 1 1 1
chr1:28281657|28281806 hsa-miR-1291 0 1 1
chr1:28281657|28281806 hsa-miR-1825 0 0 1
chr1:28281657|28281806 hsa-miR-532-3p 0 0 1
chr1:28281657|28281806 hsa-miR-767-5p 0 1 1
chr1:28281657|28281806 hsa-miR-199a-5p 0 0 1
chr1:28281657|28281806 hsa-miR-423-5p 0 0 1
chr1:28281657|28281806 hsa-miR-331-3p 0 1 1
chr1:28281657|28281806 hsa-miR-199b-5p 0 0 1
chr1:28281657|28281806 hsa-miR-324-3p 0 0 1
chr1:28281657|28281806 hsa-miR-518d-5p 0 0 1
chr1:28281657|28281806 hsa-miR-519b-5p 0 0 1
chr1:28281657|28281806 hsa-miR-519c-5p 0 0 1
chr1:28281657|28281806 hsa-miR-520c-5p 0 0 1
chr1:28281657|28281806 hsa-miR-135a 0 0 1
chr1:28281657|28281806 hsa-miR-24 0 0 1
chr1:28281657|28281806 hsa-miR-526a 0 0 1
chr1:28281657|28281806 hsa-miR-608 1 0 0
chr1:28281657|28281806 hsa-miR-637 1 0 0
chr1:28281657|28281806 hsa-miR-663a 1 0 0
chr1:28281657|28281806 hsa-miR-1976 0 1 0
chr1:28281657|28281806 hsa-miR-3196 1 1 0
chr1:28281657|28281806 hsa-miR-4292 0 1 0
chr1:28281657|28281806 hsa-miR-4291 0 1 0
chr1:28281657|28281806 hsa-miR-4522 0 1 0
chr1:28281657|28281806 hsa-miR-4706 1 0 0
chr1:28281657|28281806 hsa-miR-5693 0 1 0
chr1:28281657|28281806 hsa-miR-6165 0 1 0
chr1:28281657|28281806 hsa-miR-7706 1 0 0
chr1:28281657|28281806 hsa-miR-6836-3p 0 1 0
chr1:28281657|28281806 hsa-miR-7106-5p 1 0 0
chr1:28281657|28281806 hsa-miR-6799-5p 1 0 0
chr1:28281657|28281806 hsa-miR-139-3p 1 0 0
chr1:28281657|28281806 hsa-miR-4722-5p 1 1 0
chr1:28281657|28281806 hsa-miR-593-5p 0 1 0
chr1:28281657|28281806 hsa-miR-24-3p 0 1 0
chr1:28281657|28281806 hsa-miR-8069 1 0 0
chr1:28281657|28281806 hsa-miR-6845-3p 0 1 0
chr1:28281657|28281806 hsa-miR-659-3p 1 0 0
chr1:28281657|28281806 hsa-miR-3180-3p 0 1 0
chr1:28281657|28281806 hsa-miR-6827-5p 1 0 0
chr1:28281657|28281806 hsa-miR-6798-5p 1 0 0
chr1:28281657|28281806 hsa-miR-6782-5p 1 1 0
chr1:28281657|28281806 hsa-miR-5088-5p 1 0 0
chr1:28281657|28281806 hsa-miR-885-3p 1 0 0
chr1:28281657|28281806 hsa-miR-1228-5p 1 0 0
chr1:28281657|28281806 hsa-miR-6771-5p 1 0 0
chr1:28281657|28281806 hsa-miR-149-3p 1 0 0
chr1:28281657|28281806 hsa-miR-4733-3p 0 1 0
chr1:28281657|28281806 hsa-miR-6781-5p 1 0 0
chr1:28281657|28281806 hsa-miR-4758-3p 1 0 0
chr1:28281657|28281806 hsa-miR-6752-3p 0 1 0
chr1:28281657|28281806 hsa-miR-6777-3p 0 1 0
chr1:28281657|28281806 hsa-miR-3124-3p 0 1 0
chr1:28281657|28281806 hsa-miR-3173-5p 0 1 0
chr1:28281657|28281806 hsa-miR-1233-5p 1 0 0
chr1:28281657|28281806 hsa-miR-6778-5p 1 0 0
chr1:28281657|28281806 hsa-miR-6816-5p 1 1 0
chr1:28281657|28281806 hsa-miR-3180 0 1 0
chr1:28281657|28281806 hsa-miR-6756-5p 1 0 0
chr1:28281657|28281806 hsa-miR-6813-5p 1 0 0
chr1:28281657|28281806 hsa-miR-6815-5p 1 1 0
chr1:28281657|28281806 hsa-miR-6722-3p 1 0 0
chr1:28281657|28281806 hsa-miR-6779-5p 1 0 0
chr1:28281657|28281806 hsa-miR-4728-5p 1 1 0
chr1:28281657|28281806 hsa-miR-4685-5p 1 0 0
chr1:28281657|28281806 hsa-miR-6738-5p 1 1 0
chr1:28281657|28281806 hsa-miR-6885-5p 1 0 0
chr1:28281657|28281806 hsa-miR-6799-3p 1 1 0
chr1:28281657|28281806 hsa-miR-3184-5p 0 1 0
chr1:28281657|28281806 hsa-miR-6791-5p 0 1 0
chr1:28281657|28281806 hsa-miR-6775-3p 0 1 0
chr1:28281657|28281806 hsa-miR-9851-3p 0 1 0
chr1:28281657|28281806 hsa-miR-4756-5p 1 0 0
chr1:28281657|28281806 hsa-miR-3619-5p 0 1 0
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr1:28281657|28281806
ORF Type ORF1
Protein Length 28
Nucleotide Length 84
Protein Sequence MVPPKPSRKAQLFGRHLRQGHWRQESGV
Nucleotide Sequence ATGGTGCCACCTAAGCCATCTAGAAAGGCTCAACTTTTTGGGAGACATCTGCGGCAGGGCCACTGGAGGCAGGAGAGTGGGGTG
CircID chr1:28281657|28281806
ORF Type ORF2
Protein Length 37
Nucleotide Length 111
Protein Sequence MVPPAPPAEPWCHLSHLERLNFLGDICGRATGGRRVG
Nucleotide Sequence CTGGTGCCTCCCGCCCCTCCTGCTGAGCCATGGTGCCACCTAAGCCATCTAGAAAGGCTCAACTTTTTGGGAGACATCTGCGGCAGGGCCACTGGAGGCAGGAGAGTGGGG
CircID chr1:28281657|28281806
ORF Type ORF3
Protein Length 46
Nucleotide Length 138
Protein Sequence MPPVALPQMSPKKLSLSRWLRWHHGSAGGAGGTRVLVWTLPLGHGQ
Nucleotide Sequence CTGCCTCCAGTGGCCCTGCCGCAGATGTCTCCCAAAAAGTTGAGCCTTTCTAGATGGCTTAGGTGGCACCATGGCTCAGCAGGAGGGGCGGGAGGCACCAGGGTTCTTGTTTGGACCCTGCCCCTGGGCCATGGCCAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab