CircRNA Information

General Information
circRNA Basic Information
CircID chr1:28535059|28535328
Strand -
CircType exon
Host Gene ENSG00000180198.14;
Algorism CIRI2;
Sequence GGTGTGATTGGACTGTTGGAGCCCATGAAGAAGAGCATGGTGCCTGTGCAGGTGCAGCTGGATGTGCCTGTGGTAAAGGTGGCCTCAGGTGGGTCTGGGGGCACTTGCTCAGGGCAGGAGTTGGAGGACCTTGTTCTGGGGCTGGCCTAGCCTTGGGCCTTACAGTTGTGGCCTGCATCCCTTACCTTTTCATCCTTAGGAAACGACCACTTGGTGATGCTGACAGCTGATGGTGACCTCTACACCTTGGGCTGCGGGGAACAGGGCCAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:28535059|28535328 hsa-miR-212-5p 0 0 1
chr1:28535059|28535328 hsa-miR-212-3p 0 0 1
chr1:28535059|28535328 hsa-miR-132-5p 0 0 1
chr1:28535059|28535328 hsa-miR-132-3p 0 0 1
chr1:28535059|28535328 hsa-miR-328-5p 0 0 1
chr1:28535059|28535328 hsa-miR-328-3p 0 0 1
chr1:28535059|28535328 hsa-miR-384 0 0 1
chr1:28535059|28535328 hsa-miR-624-5p 0 0 1
chr1:28535059|28535328 hsa-miR-624-3p 0 0 1
chr1:28535059|28535328 hsa-miR-874-5p 0 0 1
chr1:28535059|28535328 hsa-miR-874-3p 0 0 1
chr1:28535059|28535328 hsa-miR-1228-5p 0 0 1
chr1:28535059|28535328 hsa-miR-1228-3p 0 0 1
chr1:28535059|28535328 hsa-miR-1291 0 1 1
chr1:28535059|28535328 hsa-miR-548m 0 0 1
chr1:28535059|28535328 hsa-miR-767-5p 0 1 1
chr1:28535059|28535328 hsa-miR-146b-3p 0 0 1
chr1:28535059|28535328 hsa-miR-361-3p 0 0 1
chr1:28535059|28535328 hsa-miR-1224-3p 0 0 1
chr1:28535059|28535328 hsa-miR-1207-3p 0 0 1
chr1:28535059|28535328 hsa-miR-140-3p 0 1 1
chr1:28535059|28535328 hsa-miR-125a-5p 0 1 1
chr1:28535059|28535328 hsa-miR-455-3p 0 0 1
chr1:28535059|28535328 hsa-miR-125b 0 0 1
chr1:28535059|28535328 hsa-miR-1274b 0 0 1
chr1:28535059|28535328 hsa-miR-1308 0 0 1
chr1:28535059|28535328 hsa-miR-220a 0 0 1
chr1:28535059|28535328 hsa-miR-1976 0 1 0
chr1:28535059|28535328 hsa-miR-544b 0 1 0
chr1:28535059|28535328 hsa-miR-4319 0 1 0
chr1:28535059|28535328 hsa-miR-4269 0 1 0
chr1:28535059|28535328 hsa-miR-3943 0 1 0
chr1:28535059|28535328 hsa-miR-4480 0 1 0
chr1:28535059|28535328 hsa-miR-2392 1 0 0
chr1:28535059|28535328 hsa-miR-4739 1 0 0
chr1:28535059|28535328 hsa-miR-6069 0 1 0
chr1:28535059|28535328 hsa-miR-18a-3p 0 1 0
chr1:28535059|28535328 hsa-miR-6894-5p 1 0 0
chr1:28535059|28535328 hsa-miR-6720-5p 1 0 0
chr1:28535059|28535328 hsa-miR-486-5p 1 0 0
chr1:28535059|28535328 hsa-miR-6757-5p 1 1 0
chr1:28535059|28535328 hsa-miR-6730-5p 0 1 0
chr1:28535059|28535328 hsa-miR-3189-5p 1 0 0
chr1:28535059|28535328 hsa-miR-3194-5p 0 1 0
chr1:28535059|28535328 hsa-miR-6858-3p 1 0 0
chr1:28535059|28535328 hsa-miR-4707-3p 1 0 0
chr1:28535059|28535328 hsa-miR-4715-3p 0 1 0
chr1:28535059|28535328 hsa-miR-3677-3p 1 0 0
chr1:28535059|28535328 hsa-miR-1266-3p 0 1 0
chr1:28535059|28535328 hsa-miR-6824-5p 1 0 0
chr1:28535059|28535328 hsa-miR-6804-3p 0 1 0
chr1:28535059|28535328 hsa-miR-1180-5p 0 1 0
chr1:28535059|28535328 hsa-miR-6814-5p 0 1 0
chr1:28535059|28535328 hsa-miR-4649-3p 0 1 0
chr1:28535059|28535328 hsa-miR-4717-5p 0 1 0
chr1:28535059|28535328 hsa-miR-371b-3p 0 1 0
chr1:28535059|28535328 hsa-miR-589-3p 0 1 0
chr1:28535059|28535328 hsa-miR-500a-3p 0 1 0
chr1:28535059|28535328 hsa-miR-5586-5p 0 1 0
chr1:28535059|28535328 hsa-miR-4685-5p 0 1 0
chr1:28535059|28535328 hsa-miR-6511b-5p 0 1 0
chr1:28535059|28535328 hsa-miR-3173-3p 1 0 0
chr1:28535059|28535328 hsa-miR-6792-3p 0 1 0
chr1:28535059|28535328 hsa-miR-10400-3p 0 1 0
chr1:28535059|28535328 hsa-miR-6775-3p 1 1 0
chr1:28535059|28535328 hsa-miR-10392-3p 1 0 0
chr1:28535059|28535328 hsa-miR-3622a-3p 0 1 0
chr1:28535059|28535328 hsa-miR-7114-3p 0 1 0
chr1:28535059|28535328 hsa-miR-6884-5p 1 0 0
chr1:28535059|28535328 hsa-miR-4691-5p 0 1 0
chr1:28535059|28535328 hsa-miR-4690-3p 0 1 0
chr1:28535059|28535328 hsa-miR-6715b-5p 0 1 0
chr1:28535059|28535328 hsa-miR-3622b-3p 0 1 0
chr1:28535059|28535328 hsa-miR-370-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


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circRNA Open Reading Frame (ORF)
CircID chr1:28535059|28535328
ORF Type ORF1
Protein Length 45
Nucleotide Length 138
Protein Sequence MLEPMKKSMVPVQVQLDVPVVKVASGGSGGTCSGQELEDLVLGLA
Nucleotide Sequence CTGTTGGAGCCCATGAAGAAGAGCATGGTGCCTGTGCAGGTGCAGCTGGATGTGCCTGTGGTAAAGGTGGCCTCAGGTGGGTCTGGGGGCACTTGCTCAGGGCAGGAGTTGGAGGACCTTGTTCTGGGGCTGGCCTAG

CircID chr1:28535059|28535328
ORF Type ORF2
Protein Length 35
Nucleotide Length 105
Protein Sequence MWPASLTFSSLGNDHLVMLTADGDLYTLGCGEQGQ
Nucleotide Sequence TTGTGGCCTGCATCCCTTACCTTTTCATCCTTAGGAAACGACCACTTGGTGATGCTGACAGCTGATGGTGACCTCTACACCTTGGGCTGCGGGGAACAGGGCCAG

CircID chr1:28535059|28535328
ORF Type ORF3
Protein Length 34
Nucleotide Length 105
Protein Sequence MGALAQGRSWRTLFWGWPSLGPYSCGLHPLPFHP
Nucleotide Sequence CTGGGGGCACTTGCTCAGGGCAGGAGTTGGAGGACCTTGTTCTGGGGCTGGCCTAGCCTTGGGCCTTACAGTTGTGGCCTGCATCCCTTACCTTTTCATCCTTAG

CircID chr1:28535059|28535328
ORF Type ORF4
Protein Length 41
Nucleotide Length 126
Protein Sequence MLRAGVGGPCSGAGLALGLTVVACIPYLFILRKRPLGDADS
Nucleotide Sequence TTGCTCAGGGCAGGAGTTGGAGGACCTTGTTCTGGGGCTGGCCTAGCCTTGGGCCTTACAGTTGTGGCCTGCATCCCTTACCTTTTCATCCTTAGGAAACGACCACTTGGTGATGCTGACAGCTGA

CircID chr1:28535059|28535328
ORF Type ORF5
Protein Length 59
Nucleotide Length 177
Protein Sequence MQATTVRPKARPAPEQGPPTPALSKCPQTHLRPPLPQAHPAAPAQAPCSSSWAPTVQSH
Nucleotide Sequence ATGCAGGCCACAACTGTAAGGCCCAAGGCTAGGCCAGCCCCAGAACAAGGTCCTCCAACTCCTGCCCTGAGCAAGTGCCCCCAGACCCACCTGAGGCCACCTTTACCACAGGCACATCCAGCTGCACCTGCACAGGCACCATGCTCTTCTTCATGGGCTCCAACAGTCCAATCACAC

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites