CircNet

General Information

circRNA Basic Information

CircID	chr1:29258505\|29260903
Strand	+
CircType	exon
Host Gene	ENSG00000060656.19;
Algorism	find_circ;CIRI2;DCC;
Sequence	GCTCCTACTTGATGGTCAACACTTCCCAGCATGCCCCAGGCCAGCGAGCCCATGTCATCTTCCAGAGCCTGAGCGAGAATGATACCCACTGTGTGCAGTTCAGCTACTTCCTGTACAGCCGGGACGGGCACAGCCCGGGCACCCTGGGCGTCTACGTGCGCGTTAATGGGGGCCCCCTGGGCAGTGCTGTGTGGAATATGACTGGATCCCACGGCCGTCAGTGGCACCAGGCTGAGCTGGCTGTCAGCACTTTCTGGCCCAATGAATATCAGGTGCTGTTTGAGGCCCTCATCTCCCCAGACCGCAGGGGCTACATGGGCCTAGATGACATCCTGCTTCTCAGCTACCCCTGCGCAAAGGCCCCACACTTCTCCCGCCTGGGCGACGTGGAGGTCAACGCGGGCCAGAACGCGTCGTTCCAGTGCATGGCCGCGGGCAGAGCGGCCGAGGCCGAACGCTTCCTCTTGCAAAGCCCCCAACTCCCATCGCGCCCCCACAGCTGCTGCGTGCTGGCCCCACCTACCTCATCATCCAGCTCAACACCAACTCCATCATTGGCGACGGGCCGATCGTGCGCAAGGAGATTGAGTACCGCATGGCGCGCGGGCCCTGGGCTGAGGTGCACGCCGTCAGCCTGCAGACCTACAAGCTGTGGCACCTCGACCCCGACACAGAGTATGAGATCAGCGTGCTGCTCACGCGTCCCGGAGACGGCGGCACTGGCCGCCCTGGGCCACCCCTCATCAGCCGCACCAAATGCGCAG

circRNA Expression in different cancers

circRNA-miRNA-gene regulatory network

Target miRNAs

CircID	miRNA	PITA	miRanda	targetScan
chr1:29258505\|29260903	hsa-miR-181a-2-3p	0	1	1

Target Genes

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Target miRNA Expression in different cancers

circRNA Open Reading Frame (ORF)

CircID	chr1:29258505\|29260903
ORF Type	ORF1
Protein Length	251
Nucleotide Length	753
Protein Sequence	MVNTSQHAPGQRAHVIFQSLSENDTHCVQFSYFLYSRDGHSPGTLGVYVRVNGGPLGSAVWNMTGSHGRQWHQAELAVSTFWPNEYQVLFEALISPDRRGYMGLDDILLLSYPCAKAPHFSRLGDVEVNAGQNASFQCMAAGRAAEAERFLLQSPQLPSRPHSCCVLAPPTSSSSSTPTPSLATGRSCARRLSTAWRAGPGLRCTPSACRPTSCGTSTPTQSMRSACCSRVPETAALAALGHPSSAAPNAQ
Nucleotide Sequence	ATGGTCAACACTTCCCAGCATGCCCCAGGCCAGCGAGCCCATGTCATCTTCCAGAGCCTGAGCGAGAATGATACCCACTGTGTGCAGTTCAGCTACTTCCTGTACAGCCGGGACGGGCACAGCCCGGGCACCCTGGGCGTCTACGTGCGCGTTAATGGGGGCCCCCTGGGCAGTGCTGTGTGGAATATGACTGGATCCCACGGCCGTCAGTGGCACCAGGCTGAGCTGGCTGTCAGCACTTTCTGGCCCAATGAATATCAGGTGCTGTTTGAGGCCCTCATCTCCCCAGACCGCAGGGGCTACATGGGCCTAGATGACATCCTGCTTCTCAGCTACCCCTGCGCAAAGGCCCCACACTTCTCCCGCCTGGGCGACGTGGAGGTCAACGCGGGCCAGAACGCGTCGTTCCAGTGCATGGCCGCGGGCAGAGCGGCCGAGGCCGAACGCTTCCTCTTGCAAAGCCCCCAACTCCCATCGCGCCCCCACAGCTGCTGCGTGCTGGCCCCACCTACCTCATCATCCAGCTCAACACCAACTCCATCATTGGCGACGGGCCGATCGTGCGCAAGGAGATTGAGTACCGCATGGCGCGCGGGCCCTGGGCTGAGGTGCACGCCGTCAGCCTGCAGACCTACAAGCTGTGGCACCTCGACCCCGACACAGAGTATGAGATCAGCGTGCTGCTCACGCGTCCCGGAGACGGCGGCACTGGCCGCCCTGGGCCACCCCTCATCAGCCGCACCAAATGCGCAG

CircID	chr1:29258505\|29260903
ORF Type	ORF2
Protein Length	88
Nucleotide Length	264
Protein Sequence	MTSCFSATPAQRPHTSPAWATWRSTRARTRRSSAWPRAERPRPNASSCKAPNSHRAPTAAACWPHLPHHPAQHQLHHWRRADRAQGD*
Nucleotide Sequence	ATGACATCCTGCTTCTCAGCTACCCCTGCGCAAAGGCCCCACACTTCTCCCGCCTGGGCGACGTGGAGGTCAACGCGGGCCAGAACGCGTCGTTCCAGTGCATGGCCGCGGGCAGAGCGGCCGAGGCCGAACGCTTCCTCTTGCAAAGCCCCCAACTCCCATCGCGCCCCCACAGCTGCTGCGTGCTGGCCCCACCTACCTCATCATCCAGCTCAACACCAACTCCATCATTGGCGACGGGCCGATCGTGCGCAAGGAGATTGA

CircID	chr1:29258505\|29260903
ORF Type	ORF3
Protein Length	114
Nucleotide Length	342
Protein Sequence	VHGRGQSGRGRTLPLAKPPTPIAPPQLLRAGPTYLIIQLNTNSIIGDGPIVRKEIEYRMARGPWAEVHAVSLQTYKLWHLDPDTEYEISVLLTRPGDGGTGRPGPPLISRTKCA
Nucleotide Sequence	GTGCATGGCCGCGGGCAGAGCGGCCGAGGCCGAACGCTTCCTCTTGCAAAGCCCCCAACTCCCATCGCGCCCCCACAGCTGCTGCGTGCTGGCCCCACCTACCTCATCATCCAGCTCAACACCAACTCCATCATTGGCGACGGGCCGATCGTGCGCAAGGAGATTGAGTACCGCATGGCGCGCGGGCCCTGGGCTGAGGTGCACGCCGTCAGCCTGCAGACCTACAAGCTGTGGCACCTCGACCCCGACACAGAGTATGAGATCAGCGTGCTGCTCACGCGTCCCGGAGACGGCGGCACTGGCCGCCCTGGGCCACCCCTCATCAGCCGCACCAAATGCGCA

CircID	chr1:29258505\|29260903
ORF Type	ORF4
Protein Length	105
Nucleotide Length	315
Protein Sequence	VPQLVGLQADGVHLSPGPARHAVLNLLAHDRPVANDGVGVELDDEVGGASTQQLWGRDGSWGLCKRKRSASAALPAAMHWNDAFWPALTSTSPRREKCGAFAQG*
Nucleotide Sequence	GTGCCACAGCTTGTAGGTCTGCAGGCTGACGGCGTGCACCTCAGCCCAGGGCCCGCGCGCCATGCGGTACTCAATCTCCTTGCGCACGATCGGCCCGTCGCCAATGATGGAGTTGGTGTTGAGCTGGATGATGAGGTAGGTGGGGCCAGCACGCAGCAGCTGTGGGGGCGCGATGGGAGTTGGGGGCTTTGCAAGAGGAAGCGTTCGGCCTCGGCCGCTCTGCCCGCGGCCATGCACTGGAACGACGCGTTCTGGCCCGCGTTGACCTCCACGTCGCCCAGGCGGGAGAAGTGTGGGGCCTTTGCGCAGGGGTAG

CircID	chr1:29258505\|29260903
ORF Type	ORF5
Protein Length	41
Nucleotide Length	123
Protein Sequence	MIPTVCSSATSCTAGTGTARAPWASTCALMGAPWAVLCGI*
Nucleotide Sequence	ATGATACCCACTGTGTGCAGTTCAGCTACTTCCTGTACAGCCGGGACGGGCACAGCCCGGGCACCCTGGGCGTCTACGTGCGCGTTAATGGGGGCCCCCTGGGCAGTGCTGTGTGGAATATGA

CircID	chr1:29258505\|29260903
ORF Type	ORF6
Protein Length	34
Nucleotide Length	102
Protein Sequence	MRGGPGRPVPPSPGRVSSTLISYSVSGSRCHSL*
Nucleotide Sequence	ATGAGGGGTGGCCCAGGGCGGCCAGTGCCGCCGTCTCCGGGACGCGTGAGCAGCACGCTGATCTCATACTCTGTGTCGGGGTCGAGGTGCCACAGCTTGTAG

CircID	chr1:29258505\|29260903
ORF Type	ORF7
Protein Length	31
Nucleotide Length	93
Protein Sequence	MGVGGFARGSVRPRPLCPRPCTGTTRSGPR*
Nucleotide Sequence	ATGGGAGTTGGGGGCTTTGCAAGAGGAAGCGTTCGGCCTCGGCCGCTCTGCCCGCGGCCATGCACTGGAACGACGCGTTCTGGCCCGCGTTGA

CircID	chr1:29258505\|29260903
ORF Type	ORF8
Protein Length	75
Nucleotide Length	225
Protein Sequence	VPLTAVGSSHIPHSTAQGAPINAHVDAQGARAVPVPAVQEVAELHTVGIILAQALEDDMGSLAWGMLGSVDHQVG
Nucleotide Sequence	GTGCCACTGACGGCCGTGGGATCCAGTCATATTCCACACAGCACTGCCCAGGGGGCCCCCATTAACGCGCACGTAGACGCCCAGGGTGCCCGGGCTGTGCCCGTCCCGGCTGTACAGGAAGTAGCTGAACTGCACACAGTGGGTATCATTCTCGCTCAGGCTCTGGAAGATGACATGGGCTCGCTGGCCTGGGGCATGCTGGGAAGTGTTGACCATCAAGTAGGA

CircID	chr1:29258505\|29260903
ORF Type	ORF9
Protein Length	59
Nucleotide Length	177
Protein Sequence	VGARWELGALQEEAFGLGRSARGHALERRVLARVDLHVAQAGEVWGLCAGVAEKQDVI*
Nucleotide Sequence	GTGGGGGCGCGATGGGAGTTGGGGGCTTTGCAAGAGGAAGCGTTCGGCCTCGGCCGCTCTGCCCGCGGCCATGCACTGGAACGACGCGTTCTGGCCCGCGTTGACCTCCACGTCGCCCAGGCGGGAGAAGTGTGGGGCCTTTGCGCAGGGGTAGCTGAGAAGCAGGATGTCATCTAG

RNA Binding Protein (RBP) of circRNA

CircID	RBP	Number of Upstream Sites	Number of Downstream Sites	Number of Circ Exons Sites
chr1:29258505\|29260903	MOV10	0	0	1
chr1:29258505\|29260903	ELAVL1	0	0	1
chr1:29258505\|29260903	PRPF8	0	2	0
chr1:29258505\|29260903	UPF1	1	0	0
chr1:29258505\|29260903	TAF15	1	0	0
chr1:29258505\|29260903	FMR1	0	0	2
chr1:29258505\|29260903	FUS	0	1	0
chr1:29258505\|29260903	NOP58	0	0	2
chr1:29258505\|29260903	ADAR	0	0	1
chr1:29258505\|29260903	NOP56	0	0	1
chr1:29258505\|29260903	SRSF9	0	0	1
chr1:29258505\|29260903	DDX54	0	0	7
chr1:29258505\|29260903	LIN28B	0	0	5
chr1:29258505\|29260903	SND1	0	0	1
chr1:29258505\|29260903	IGF2BP2	0	0	1
chr1:29258505\|29260903	FTO	0	0	1
chr1:29258505\|29260903	TARDBP	0	1	0
chr1:29258505\|29260903	CNBP	0	0	1
chr1:29258505\|29260903	CSTF2T	0	0	1
chr1:29258505\|29260903	DKC1	0	1	0
chr1:29258505\|29260903	FBL	0	0	1
chr1:29258505\|29260903	EIF4A3	0	0	7
chr1:29258505\|29260903	AGO2	0	0	2

CircRNA Information