CircRNA Information

General Information
circRNA Basic Information
CircID chr1:32030298|32038619
Strand +
CircType exon
Host Gene ENSG00000121774.17;
Algorism find_circ;CIRI2;DCC;
Sequence AAATTGAGAAGATTCAGAAAGGAGACTCAAAAAAGGATGATGAGGAGAATTACTTGGATTTATTTTCTCATAAGAACATGAAACTGAAAGAGCGAGTGCTGATACCTGTCAAGCAGTATCCCAAGTTCAATTTTGTGGGGAAGATTCTTGGACCACAAGGGAATACAATCAAAAGACTGCAGGAAGAGACTGGTGCAAAGATCTCTGTATTGGGAAAGGGCTCAATGAGAGACAAAGCCAAGGAGGAAGAGCTGCGCAAAGGTGGAGACCCCAAATATGCCCACTTGAATATGGATCTGCATGTCTTCATTGAAGTCTTTGGACCCCCATGTGAGGCTTATGCTCTTATGGCCCATGCCATGGAGGAAGTCAAGAAATTTCTAGTACCGGATATGATGGATGATATCTGTCAGGAGCAATTTCTAGAGCTGTCCTACTTGAATGGAGTACCTGAACCCTCTCGTGGACGTGGGGTGCCAGTGAGAGGCCGGGGAGCTGCACCTCCTCCACCACCTGTTCCCAGGGGCCGTGGTGTTGGACCACCTCGGGGGGCTTTGGTACGTGGTACACCAGTAAGGGGAGCCATCACCAGAGGTGCCACTGTGACTCGAGGCGTGCCACCCCCACCTACTGTGAGGGGTGCTCCAGCACCAAGAGCACGGACAGCGGGCATCCAGAGGATACCTTTGCCTCCACCTCCTGCACCAGAAACATATGAAGAATATGGATATGATGATACATACGCAGAACAAAGTTACGAAGGCTACGAAGGCTATTACAGCCAGAGTCAAGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr1:32030298|32038619
ORF Type ORF1
Protein Length 238
Nucleotide Length 714
Protein Sequence MKLKERVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVPDMMDDICQEQFLELSYLNGVPEPSRGRGVPVRGRGAAPPPPPVPRGRGVGPPRGALVRGTPVRGAITRGATVTRGVPPPPTVRGAPAPRARTAGIQRIPLPPPPAPETYEEYGYDDTYAEQSYEGYEGYYSQSQ
Nucleotide Sequence ATGAAACTGAAAGAGCGAGTGCTGATACCTGTCAAGCAGTATCCCAAGTTCAATTTTGTGGGGAAGATTCTTGGACCACAAGGGAATACAATCAAAAGACTGCAGGAAGAGACTGGTGCAAAGATCTCTGTATTGGGAAAGGGCTCAATGAGAGACAAAGCCAAGGAGGAAGAGCTGCGCAAAGGTGGAGACCCCAAATATGCCCACTTGAATATGGATCTGCATGTCTTCATTGAAGTCTTTGGACCCCCATGTGAGGCTTATGCTCTTATGGCCCATGCCATGGAGGAAGTCAAGAAATTTCTAGTACCGGATATGATGGATGATATCTGTCAGGAGCAATTTCTAGAGCTGTCCTACTTGAATGGAGTACCTGAACCCTCTCGTGGACGTGGGGTGCCAGTGAGAGGCCGGGGAGCTGCACCTCCTCCACCACCTGTTCCCAGGGGCCGTGGTGTTGGACCACCTCGGGGGGCTTTGGTACGTGGTACACCAGTAAGGGGAGCCATCACCAGAGGTGCCACTGTGACTCGAGGCGTGCCACCCCCACCTACTGTGAGGGGTGCTCCAGCACCAAGAGCACGGACAGCGGGCATCCAGAGGATACCTTTGCCTCCACCTCCTGCACCAGAAACATATGAAGAATATGGATATGATGATACATACGCAGAACAAAGTTACGAAGGCTACGAAGGCTATTACAGCCAGAGTCAA
CircID chr1:32030298|32038619
ORF Type ORF2
Protein Length 81
Nucleotide Length 243
Protein Sequence MKTCRSIFKWAYLGSPPLRSSSSLALSLIEPFPNTEIFAPVSSCSLLIVFPCGPRIFPTKLNLGYCLTGISTRSFSFMFL*
Nucleotide Sequence ATGAAGACATGCAGATCCATATTCAAGTGGGCATATTTGGGGTCTCCACCTTTGCGCAGCTCTTCCTCCTTGGCTTTGTCTCTCATTGAGCCCTTTCCCAATACAGAGATCTTTGCACCAGTCTCTTCCTGCAGTCTTTTGATTGTATTCCCTTGTGGTCCAAGAATCTTCCCCACAAAATTGAACTTGGGATACTGCTTGACAGGTATCAGCACTCGCTCTTTCAGTTTCATGTTCTTATGA
CircID chr1:32030298|32038619
ORF Type ORF3
Protein Length 80
Nucleotide Length 240
Protein Sequence MPAVRALGAGAPLTVGGGGTPRVTVAPLVMAPLTGVPRTKAPRGGPTPRPLGTGGGGGAAPRPLTGTPRPREGSGTPFK*
Nucleotide Sequence ATGCCCGCTGTCCGTGCTCTTGGTGCTGGAGCACCCCTCACAGTAGGTGGGGGTGGCACGCCTCGAGTCACAGTGGCACCTCTGGTGATGGCTCCCCTTACTGGTGTACCACGTACCAAAGCCCCCCGAGGTGGTCCAACACCACGGCCCCTGGGAACAGGTGGTGGAGGAGGTGCAGCTCCCCGGCCTCTCACTGGCACCCCACGTCCACGAGAGGGTTCAGGTACTCCATTCAAGTAG
CircID chr1:32030298|32038619
ORF Type ORF4
Protein Length 123
Nucleotide Length 369
Protein Sequence LTLAVIAFVAFVTLFCVCIIISIFFICFWCRRWRQRYPLDARCPCSWCWSTPHSRWGWHASSHSGTSGDGSPYWCTTYQSPPRWSNTTAPGNRWWRRCSSPASHWHPTSTRGFRYSIQVGQL*
Nucleotide Sequence TTGACTCTGGCTGTAATAGCCTTCGTAGCCTTCGTAACTTTGTTCTGCGTATGTATCATCATATCCATATTCTTCATATGTTTCTGGTGCAGGAGGTGGAGGCAAAGGTATCCTCTGGATGCCCGCTGTCCGTGCTCTTGGTGCTGGAGCACCCCTCACAGTAGGTGGGGGTGGCACGCCTCGAGTCACAGTGGCACCTCTGGTGATGGCTCCCCTTACTGGTGTACCACGTACCAAAGCCCCCCGAGGTGGTCCAACACCACGGCCCCTGGGAACAGGTGGTGGAGGAGGTGCAGCTCCCCGGCCTCTCACTGGCACCCCACGTCCACGAGAGGGTTCAGGTACTCCATTCAAGTAGGACAGCTCTAG
CircID chr1:32030298|32038619
ORF Type ORF5
Protein Length 45
Nucleotide Length 135
Protein Sequence MGHKSISLTWGSKDFNEDMQIHIQVGIFGVSTFAQLFLLGFVSH*
Nucleotide Sequence ATGGGCCATAAGAGCATAAGCCTCACATGGGGGTCCAAAGACTTCAATGAAGACATGCAGATCCATATTCAAGTGGGCATATTTGGGGTCTCCACCTTTGCGCAGCTCTTCCTCCTTGGCTTTGTCTCTCATTGA
CircID chr1:32030298|32038619
ORF Type ORF6
Protein Length 38
Nucleotide Length 114
Protein Sequence MYHHIHILHMFLVQEVEAKVSSGCPLSVLLVLEHPSQ*
Nucleotide Sequence ATGTATCATCATATCCATATTCTTCATATGTTTCTGGTGCAGGAGGTGGAGGCAAAGGTATCCTCTGGATGCCCGCTGTCCGTGCTCTTGGTGCTGGAGCACCCCTCACAGTAG
CircID chr1:32030298|32038619
ORF Type ORF7
Protein Length 67
Nucleotide Length 201
Protein Sequence VYHVPKPPEVVQHHGPWEQVVEEVQLPGLSLAPHVHERVQVLHSSRTALEIAPDRYHPSYPVLEIS*
Nucleotide Sequence GTGTACCACGTACCAAAGCCCCCCGAGGTGGTCCAACACCACGGCCCCTGGGAACAGGTGGTGGAGGAGGTGCAGCTCCCCGGCCTCTCACTGGCACCCCACGTCCACGAGAGGGTTCAGGTACTCCATTCAAGTAGGACAGCTCTAGAAATTGCTCCTGACAGATATCATCCATCATATCCGGTACTAGAAATTTCTTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr1:32030298|32038619 SLBP 0 0 1
chr1:32030298|32038619 MOV10 0 5 4
chr1:32030298|32038619 ELAVL1 3 7 6
chr1:32030298|32038619 SF3B4 0 3 2
chr1:32030298|32038619 SF3A3 0 2 0
chr1:32030298|32038619 PRPF8 0 8 2
chr1:32030298|32038619 UPF1 0 4 1
chr1:32030298|32038619 TAF15 0 1 0
chr1:32030298|32038619 CAPRIN1 1 0 1
chr1:32030298|32038619 FMR1 1 6 18
chr1:32030298|32038619 IGF2BP3 1 3 6
chr1:32030298|32038619 FUS 0 1 1
chr1:32030298|32038619 DGCR8 0 1 3
chr1:32030298|32038619 SRSF1 1 2 7
chr1:32030298|32038619 NOP58 0 2 8
chr1:32030298|32038619 U2AF1 0 1 5
chr1:32030298|32038619 U2AF2 11 15 5
chr1:32030298|32038619 SRSF9 0 2 1
chr1:32030298|32038619 NOP56 3 0 1
chr1:32030298|32038619 DDX54 1 1 16
chr1:32030298|32038619 RBM10 0 7 0
chr1:32030298|32038619 TIAL1 0 1 0
chr1:32030298|32038619 DKC1 0 0 1
chr1:32030298|32038619 PTBP1 0 0 3
chr1:32030298|32038619 HNRNPC 2 1 0
chr1:32030298|32038619 TRA2A 0 1 4
chr1:32030298|32038619 DHX9 1 0 0
chr1:32030298|32038619 HNRNPA1 1 0 0
chr1:32030298|32038619 DDX3X 0 0 1
chr1:32030298|32038619 ZC3H7B 1 2 3
chr1:32030298|32038619 LARP4B 0 1 2
chr1:32030298|32038619 SMNDC1 0 1 0
chr1:32030298|32038619 MSI2 0 3 3
chr1:32030298|32038619 ACIN1 0 0 6
chr1:32030298|32038619 LIN28B 0 8 14
chr1:32030298|32038619 LIN28A 0 1 2
chr1:32030298|32038619 FXR1 0 2 5
chr1:32030298|32038619 FXR2 0 3 6
chr1:32030298|32038619 SND1 0 4 9
chr1:32030298|32038619 IGF2BP1 0 3 4
chr1:32030298|32038619 LARP7 0 0 1
chr1:32030298|32038619 IGF2BP2 3 5 19
chr1:32030298|32038619 TARDBP 0 0 2
chr1:32030298|32038619 YTHDC1 0 0 1
chr1:32030298|32038619 FBL 1 1 5
chr1:32030298|32038619 BUD13 0 2 7
chr1:32030298|32038619 KHSRP 0 1 0
chr1:32030298|32038619 CNBP 0 1 3
chr1:32030298|32038619 EIF4G2 0 1 5
chr1:32030298|32038619 RBM47 0 1 3
chr1:32030298|32038619 CSTF2T 0 1 3
chr1:32030298|32038619 TIA1 0 1 0
chr1:32030298|32038619 RBM22 0 1 0
chr1:32030298|32038619 XRN2 0 1 0
chr1:32030298|32038619 RTCB 0 0 2
chr1:32030298|32038619 YWHAG 0 1 0
chr1:32030298|32038619 AIFM1 0 0 2
chr1:32030298|32038619 AGO1 0 0 1
chr1:32030298|32038619 EWSR1 0 1 0
chr1:32030298|32038619 EIF4A3 2 4 14
chr1:32030298|32038619 AGO2 0 2 12
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab