CircRNA Information

General Information
circRNA Basic Information
CircID chr1:32321920|32322235
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence AGCCTCCCAGTGTTTACCCAGGAAGTGAGGAAGAGACCCACCCGCTGCACACTCCCTCATGCAGCCATGCTTCTTCCTCAGAGCACCGGATCTTGGCACCCTCCAAGTTTAGTGCAGAACCAGAGCTGGTAACTCTTGTGGTTATTGTAGATCTTGAGCTTCAACTGTGTCTTGAGATTTTACCAGCACAATCCAAACTGAGCTCTTCTGCTCTCACCCCAGGGCTGCTCCTTCCTCTACTTTTGGAAATCTTGATAACAGTGGGTACAGTAGAAGGCTGGGCAAGAGAATAAGTATGCAGCCCCACACCTCCTGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:32321920|32322235 hsa-miR-30a-5p 0 0 1
chr1:32321920|32322235 hsa-miR-30a-3p 0 0 1
chr1:32321920|32322235 hsa-miR-30d-5p 0 0 1
chr1:32321920|32322235 hsa-miR-30d-3p 0 0 1
chr1:32321920|32322235 hsa-miR-216a-5p 0 0 1
chr1:32321920|32322235 hsa-miR-216a-3p 0 0 1
chr1:32321920|32322235 hsa-miR-30b-5p 0 0 1
chr1:32321920|32322235 hsa-miR-30b-3p 0 0 1
chr1:32321920|32322235 hsa-miR-122-5p 0 0 1
chr1:32321920|32322235 hsa-miR-122-3p 0 0 1
chr1:32321920|32322235 hsa-miR-141-5p 0 0 1
chr1:32321920|32322235 hsa-miR-141-3p 0 0 1
chr1:32321920|32322235 hsa-miR-200a-5p 0 0 1
chr1:32321920|32322235 hsa-miR-200a-3p 0 0 1
chr1:32321920|32322235 hsa-miR-30e-5p 0 0 1
chr1:32321920|32322235 hsa-miR-30e-3p 0 0 1
chr1:32321920|32322235 hsa-miR-432-5p 0 0 1
chr1:32321920|32322235 hsa-miR-432-3p 0 0 1
chr1:32321920|32322235 hsa-miR-555 0 0 1
chr1:32321920|32322235 hsa-miR-604 0 0 1
chr1:32321920|32322235 hsa-miR-608 0 1 1
chr1:32321920|32322235 hsa-miR-634 0 0 1
chr1:32321920|32322235 hsa-miR-647 1 0 1
chr1:32321920|32322235 hsa-miR-648 0 1 1
chr1:32321920|32322235 hsa-miR-298 0 0 1
chr1:32321920|32322235 hsa-miR-890 0 0 1
chr1:32321920|32322235 hsa-miR-877-5p 0 0 1
chr1:32321920|32322235 hsa-miR-877-3p 0 0 1
chr1:32321920|32322235 hsa-miR-1183 0 0 1
chr1:32321920|32322235 hsa-miR-1236-5p 0 0 1
chr1:32321920|32322235 hsa-miR-1236-3p 0 0 1
chr1:32321920|32322235 hsa-miR-1208 0 0 1
chr1:32321920|32322235 hsa-miR-1250-5p 0 0 1
chr1:32321920|32322235 hsa-miR-1250-3p 0 0 1
chr1:32321920|32322235 hsa-miR-548n 0 0 1
chr1:32321920|32322235 hsa-miR-513c-5p 0 0 1
chr1:32321920|32322235 hsa-miR-513c-3p 0 0 1
chr1:32321920|32322235 hsa-miR-127-5p 0 1 1
chr1:32321920|32322235 hsa-miR-491-5p 0 0 1
chr1:32321920|32322235 hsa-miR-1283 0 0 1
chr1:32321920|32322235 hsa-miR-193a-5p 0 0 1
chr1:32321920|32322235 hsa-miR-574-5p 0 1 1
chr1:32321920|32322235 hsa-miR-338-5p 0 0 1
chr1:32321920|32322235 hsa-miR-342-5p 0 0 1
chr1:32321920|32322235 hsa-miR-30c 0 0 1
chr1:32321920|32322235 hsa-miR-138 0 0 1
chr1:32321920|32322235 hsa-miR-218 0 0 1
chr1:32321920|32322235 hsa-miR-544 0 0 1
chr1:32321920|32322235 hsa-miR-768-5p 0 0 1
chr1:32321920|32322235 hsa-miR-886-3p 0 0 1
chr1:32321920|32322235 hsa-miR-936 1 1 0
chr1:32321920|32322235 hsa-miR-1248 0 1 0
chr1:32321920|32322235 hsa-miR-3125 0 1 0
chr1:32321920|32322235 hsa-miR-3154 1 0 0
chr1:32321920|32322235 hsa-miR-4270 1 0 0
chr1:32321920|32322235 hsa-miR-3618 0 1 0
chr1:32321920|32322235 hsa-miR-3915 0 1 0
chr1:32321920|32322235 hsa-miR-3916 0 1 0
chr1:32321920|32322235 hsa-miR-4468 0 1 0
chr1:32321920|32322235 hsa-miR-4490 0 1 0
chr1:32321920|32322235 hsa-miR-4510 0 1 0
chr1:32321920|32322235 hsa-miR-4656 1 1 0
chr1:32321920|32322235 hsa-miR-4660 0 1 0
chr1:32321920|32322235 hsa-miR-4739 1 1 0
chr1:32321920|32322235 hsa-miR-5691 0 1 0
chr1:32321920|32322235 hsa-miR-5698 1 0 0
chr1:32321920|32322235 hsa-miR-6081 0 1 0
chr1:32321920|32322235 hsa-miR-6127 1 1 0
chr1:32321920|32322235 hsa-miR-6130 0 1 0
chr1:32321920|32322235 hsa-miR-6133 0 1 0
chr1:32321920|32322235 hsa-miR-6165 0 1 0
chr1:32321920|32322235 hsa-miR-12115 1 1 0
chr1:32321920|32322235 hsa-miR-12119 0 1 0
chr1:32321920|32322235 hsa-miR-671-5p 1 0 0
chr1:32321920|32322235 hsa-miR-7106-5p 1 0 0
chr1:32321920|32322235 hsa-miR-6825-5p 1 0 0
chr1:32321920|32322235 hsa-miR-6894-5p 1 0 0
chr1:32321920|32322235 hsa-miR-6854-5p 0 1 0
chr1:32321920|32322235 hsa-miR-6799-5p 1 1 0
chr1:32321920|32322235 hsa-miR-6804-5p 0 1 0
chr1:32321920|32322235 hsa-miR-6515-5p 0 1 0
chr1:32321920|32322235 hsa-miR-3192-5p 0 1 0
chr1:32321920|32322235 hsa-miR-6880-5p 0 1 0
chr1:32321920|32322235 hsa-miR-4722-5p 0 1 0
chr1:32321920|32322235 hsa-miR-6890-5p 0 1 0
chr1:32321920|32322235 hsa-miR-6742-5p 1 0 0
chr1:32321920|32322235 hsa-miR-659-3p 1 0 0
chr1:32321920|32322235 hsa-miR-6796-5p 1 1 0
chr1:32321920|32322235 hsa-miR-185-3p 1 1 0
chr1:32321920|32322235 hsa-miR-6732-5p 0 1 0
chr1:32321920|32322235 hsa-miR-6881-5p 0 1 0
chr1:32321920|32322235 hsa-miR-4793-3p 0 1 0
chr1:32321920|32322235 hsa-miR-6852-5p 0 1 0
chr1:32321920|32322235 hsa-miR-5088-5p 1 1 0
chr1:32321920|32322235 hsa-miR-1226-5p 1 0 0
chr1:32321920|32322235 hsa-miR-6763-3p 1 0 0
chr1:32321920|32322235 hsa-miR-4783-3p 1 0 0
chr1:32321920|32322235 hsa-miR-4732-5p 1 0 0
chr1:32321920|32322235 hsa-miR-6749-5p 1 0 0
chr1:32321920|32322235 hsa-miR-6809-3p 0 1 0
chr1:32321920|32322235 hsa-miR-4787-5p 1 0 0
chr1:32321920|32322235 hsa-miR-3162-5p 1 0 0
chr1:32321920|32322235 hsa-miR-6839-3p 0 1 0
chr1:32321920|32322235 hsa-miR-4763-3p 1 0 0
chr1:32321920|32322235 hsa-miR-6812-5p 1 1 0
chr1:32321920|32322235 hsa-miR-1343-5p 1 0 0
chr1:32321920|32322235 hsa-miR-6752-5p 1 1 0
chr1:32321920|32322235 hsa-miR-6756-5p 1 1 0
chr1:32321920|32322235 hsa-miR-6803-5p 1 0 0
chr1:32321920|32322235 hsa-miR-6819-5p 1 1 0
chr1:32321920|32322235 hsa-miR-7110-5p 1 1 0
chr1:32321920|32322235 hsa-miR-6751-5p 1 0 0
chr1:32321920|32322235 hsa-miR-6797-5p 1 0 0
chr1:32321920|32322235 hsa-miR-4632-5p 1 0 0
chr1:32321920|32322235 hsa-miR-4725-3p 1 0 0
chr1:32321920|32322235 hsa-miR-6777-5p 1 0 0
chr1:32321920|32322235 hsa-miR-6858-5p 1 0 0
chr1:32321920|32322235 hsa-miR-6883-5p 1 0 0
chr1:32321920|32322235 hsa-miR-6876-5p 0 1 0
chr1:32321920|32322235 hsa-miR-6766-5p 1 1 0
chr1:32321920|32322235 hsa-miR-3689d 0 1 0
chr1:32321920|32322235 hsa-miR-6791-5p 1 1 0
chr1:32321920|32322235 hsa-miR-3928-5p 0 1 0
chr1:32321920|32322235 hsa-miR-6859-5p 0 1 0
chr1:32321920|32322235 hsa-miR-6824-3p 0 1 0
chr1:32321920|32322235 hsa-miR-3617-5p 0 1 0
chr1:32321920|32322235 hsa-miR-1-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr1:32321920|32322235
ORF Type ORF1
Protein Length 82
Nucleotide Length 249
Protein Sequence MHTPSCSHASSSEHRILAPSKFSAEPELVTLVVIVDLELQLCLEILPAQSKLSSSALTPGLLLPLLLEILITVGTVEGWARE
Nucleotide Sequence CTGCACACTCCCTCATGCAGCCATGCTTCTTCCTCAGAGCACCGGATCTTGGCACCCTCCAAGTTTAGTGCAGAACCAGAGCTGGTAACTCTTGTGGTTATTGTAGATCTTGAGCTTCAACTGTGTCTTGAGATTTTACCAGCACAATCCAAACTGAGCTCTTCTGCTCTCACCCCAGGGCTGCTCCTTCCTCTACTTTTGGAAATCTTGATAACAGTGGGTACAGTAGAAGGCTGGGCAAGAGAATAA
CircID chr1:32321920|32322235
ORF Type ORF2
Protein Length 46
Nucleotide Length 141
Protein Sequence MHTYSLAQPSTVPTVIKISKSRGRSSPGVRAEELSLDCAGKISRHS
Nucleotide Sequence CTGCATACTTATTCTCTTGCCCAGCCTTCTACTGTACCCACTGTTATCAAGATTTCCAAAAGTAGAGGAAGGAGCAGCCCTGGGGTGAGAGCAGAAGAGCTCAGTTTGGATTGTGCTGGTAAAATCTCAAGACACAGTTGA
CircID chr1:32321920|32322235
ORF Type ORF3
Protein Length 30
Nucleotide Length 93
Protein Sequence MEGAKIRCSEEEAWLHEGVCSGWVSSSLPG
Nucleotide Sequence TTGGAGGGTGCCAAGATCCGGTGCTCTGAGGAAGAAGCATGGCTGCATGAGGGAGTGTGCAGCGGGTGGGTCTCTTCCTCACTTCCTGGGTAA
CircID chr1:32321920|32322235
ORF Type ORF4
Protein Length 27
Nucleotide Length 81
Protein Sequence MRKKHGCMRECAAGGSLPHFLGKHWEA
Nucleotide Sequence CTGAGGAAGAAGCATGGCTGCATGAGGGAGTGTGCAGCGGGTGGGTCTCTTCCTCACTTCCTGGGTAAACACTGGGAGGCT
CircID chr1:32321920|32322235
ORF Type ORF5
Protein Length 28
Nucleotide Length 87
Protein Sequence MKLKIYNNHKSYQLWFCTKLGGCQDPVL
Nucleotide Sequence TTGAAGCTCAAGATCTACAATAACCACAAGAGTTACCAGCTCTGGTTCTGCACTAAACTTGGAGGGTGCCAAGATCCGGTGCTCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab