CircRNA Information

General Information
circRNA Basic Information
CircID chr1:32772930|32773180
Strand -
CircType exon
Host Gene ENSG00000162522.9;
Algorism CIRI2;
Sequence ACAATCTCAGGGACCCGAGCAGCTCCAAGGACGAGAGGATACAGCAGACACAACCTAATAGAGAGGGCGCCTGCAGCCTTAACCTCCACGGCCTTCGATACTTATGCAAGCCTGGTGTTGCTCCTGTCCTCAGAGTCATCCTGCGCTCATGCCTTTTCCCGAATGGGTTCACCTCTGGCAGTTGCCGCTTCAGTCTTGGCCTTAGCCTCATCTTGAAGTGGGTAGCTGGCGGGAGAGGGTGGCTGCGCCCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:32772930|32773180 hsa-miR-346 0 0 1
chr1:32772930|32773180 hsa-miR-448 0 0 1
chr1:32772930|32773180 hsa-miR-432-5p 0 0 1
chr1:32772930|32773180 hsa-miR-432-3p 0 0 1
chr1:32772930|32773180 hsa-miR-558 0 0 1
chr1:32772930|32773180 hsa-miR-592 0 0 1
chr1:32772930|32773180 hsa-miR-599 0 1 1
chr1:32772930|32773180 hsa-miR-632 0 1 1
chr1:32772930|32773180 hsa-miR-660-5p 0 0 1
chr1:32772930|32773180 hsa-miR-660-3p 0 0 1
chr1:32772930|32773180 hsa-miR-1205 0 1 1
chr1:32772930|32773180 hsa-miR-423-3p 0 0 1
chr1:32772930|32773180 hsa-miR-1224-5p 0 0 1
chr1:32772930|32773180 hsa-miR-485-5p 0 0 1
chr1:32772930|32773180 hsa-miR-339-3p 1 0 1
chr1:32772930|32773180 hsa-miR-125a-5p 0 0 1
chr1:32772930|32773180 hsa-miR-125b 0 0 1
chr1:32772930|32773180 hsa-miR-153 0 0 1
chr1:32772930|32773180 hsa-miR-637 1 0 0
chr1:32772930|32773180 hsa-miR-764 1 0 0
chr1:32772930|32773180 hsa-miR-935 0 1 0
chr1:32772930|32773180 hsa-miR-2110 1 0 0
chr1:32772930|32773180 hsa-miR-3132 1 0 0
chr1:32772930|32773180 hsa-miR-3183 1 0 0
chr1:32772930|32773180 hsa-miR-3196 1 0 0
chr1:32772930|32773180 hsa-miR-4298 1 0 0
chr1:32772930|32773180 hsa-miR-4260 1 0 0
chr1:32772930|32773180 hsa-miR-4327 0 1 0
chr1:32772930|32773180 hsa-miR-4288 0 1 0
chr1:32772930|32773180 hsa-miR-1268b 1 0 0
chr1:32772930|32773180 hsa-miR-4440 1 0 0
chr1:32772930|32773180 hsa-miR-4507 1 0 0
chr1:32772930|32773180 hsa-miR-3975 0 1 0
chr1:32772930|32773180 hsa-miR-4767 1 0 0
chr1:32772930|32773180 hsa-miR-5690 0 1 0
chr1:32772930|32773180 hsa-miR-6081 1 0 0
chr1:32772930|32773180 hsa-miR-6124 0 1 0
chr1:32772930|32773180 hsa-miR-8089 1 1 0
chr1:32772930|32773180 hsa-miR-9899 1 0 0
chr1:32772930|32773180 hsa-miR-12119 0 1 0
chr1:32772930|32773180 hsa-miR-135a-3p 1 0 0
chr1:32772930|32773180 hsa-miR-6765-5p 1 0 0
chr1:32772930|32773180 hsa-miR-6894-5p 1 0 0
chr1:32772930|32773180 hsa-miR-4687-3p 1 0 0
chr1:32772930|32773180 hsa-miR-6892-3p 0 1 0
chr1:32772930|32773180 hsa-miR-7114-5p 1 0 0
chr1:32772930|32773180 hsa-miR-6089 1 0 0
chr1:32772930|32773180 hsa-miR-6880-5p 1 0 0
chr1:32772930|32773180 hsa-miR-7847-3p 0 1 0
chr1:32772930|32773180 hsa-miR-6744-5p 0 1 0
chr1:32772930|32773180 hsa-miR-6746-5p 1 0 0
chr1:32772930|32773180 hsa-miR-4722-5p 1 0 0
chr1:32772930|32773180 hsa-miR-4753-5p 0 1 0
chr1:32772930|32773180 hsa-miR-6762-3p 1 0 0
chr1:32772930|32773180 hsa-miR-6727-5p 1 0 0
chr1:32772930|32773180 hsa-miR-6806-5p 1 0 0
chr1:32772930|32773180 hsa-miR-7845-5p 1 0 0
chr1:32772930|32773180 hsa-miR-185-3p 1 0 0
chr1:32772930|32773180 hsa-miR-6760-5p 1 0 0
chr1:32772930|32773180 hsa-miR-6810-5p 1 1 0
chr1:32772930|32773180 hsa-miR-1226-5p 1 0 0
chr1:32772930|32773180 hsa-miR-6771-5p 1 1 0
chr1:32772930|32773180 hsa-miR-7854-3p 0 1 0
chr1:32772930|32773180 hsa-miR-7111-3p 0 1 0
chr1:32772930|32773180 hsa-miR-425-3p 0 1 0
chr1:32772930|32773180 hsa-miR-4733-3p 0 1 0
chr1:32772930|32773180 hsa-miR-3189-3p 1 1 0
chr1:32772930|32773180 hsa-miR-4632-3p 1 1 0
chr1:32772930|32773180 hsa-miR-6865-3p 0 1 0
chr1:32772930|32773180 hsa-miR-2277-5p 1 0 0
chr1:32772930|32773180 hsa-miR-5004-5p 1 1 0
chr1:32772930|32773180 hsa-miR-4704-5p 0 1 0
chr1:32772930|32773180 hsa-miR-6789-3p 1 0 0
chr1:32772930|32773180 hsa-miR-4763-3p 1 0 0
chr1:32772930|32773180 hsa-miR-6726-5p 1 0 0
chr1:32772930|32773180 hsa-miR-6743-5p 1 0 0
chr1:32772930|32773180 hsa-miR-6803-5p 1 0 0
chr1:32772930|32773180 hsa-miR-6813-5p 1 0 0
chr1:32772930|32773180 hsa-miR-6851-5p 1 0 0
chr1:32772930|32773180 hsa-miR-6751-5p 1 0 0
chr1:32772930|32773180 hsa-miR-6879-5p 1 0 0
chr1:32772930|32773180 hsa-miR-6846-5p 1 0 0
chr1:32772930|32773180 hsa-miR-6848-5p 1 0 0
chr1:32772930|32773180 hsa-miR-6858-5p 1 0 0
chr1:32772930|32773180 hsa-miR-4697-5p 0 1 0
chr1:32772930|32773180 hsa-miR-1199-5p 1 0 0
chr1:32772930|32773180 hsa-miR-342-5p 1 0 0
chr1:32772930|32773180 hsa-miR-7107-3p 1 1 0
chr1:32772930|32773180 hsa-miR-4723-3p 0 1 0
chr1:32772930|32773180 hsa-miR-6769b-3p 0 1 0
chr1:32772930|32773180 hsa-miR-494-5p 1 0 0
chr1:32772930|32773180 hsa-miR-4653-5p 0 1 0
chr1:32772930|32773180 hsa-miR-7161-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr1:32772930|32773180
ORF Type ORF1
Protein Length 34
Nucleotide Length 105
Protein Sequence MVLLLSSESSCAHAFSRMGSPLAVAASVLALASS
Nucleotide Sequence CTGGTGTTGCTCCTGTCCTCAGAGTCATCCTGCGCTCATGCCTTTTCCCGAATGGGTTCACCTCTGGCAGTTGCCGCTTCAGTCTTGGCCTTAGCCTCATCTTGA
CircID chr1:32772930|32773180
ORF Type ORF2
Protein Length 33
Nucleotide Length 102
Protein Sequence MQAWCCSCPQSHPALMPFPEWVHLWQLPLQSWP
Nucleotide Sequence ATGCAAGCCTGGTGTTGCTCCTGTCCTCAGAGTCATCCTGCGCTCATGCCTTTTCCCGAATGGGTTCACCTCTGGCAGTTGCCGCTTCAGTCTTGGCCTTAG
CircID chr1:32772930|32773180
ORF Type ORF3
Protein Length 37
Nucleotide Length 111
Protein Sequence MRSCLFPNGFTSGSCRFSLGLSLILKWVAGGRGWLRP
Nucleotide Sequence CTGCGCTCATGCCTTTTCCCGAATGGGTTCACCTCTGGCAGTTGCCGCTTCAGTCTTGGCCTTAGCCTCATCTTGAAGTGGGTAGCTGGCGGGAGAGGGTGGCTGCGCCCC
CircID chr1:32772930|32773180
ORF Type ORF4
Protein Length 70
Nucleotide Length 210
Protein Sequence MRLRPRLKRQLPEVNPFGKRHERRMTLRTGATPGLHKYRRPWRLRLQAPSLLGCVCCILSSLELLGSLRL
Nucleotide Sequence ATGAGGCTAAGGCCAAGACTGAAGCGGCAACTGCCAGAGGTGAACCCATTCGGGAAAAGGCATGAGCGCAGGATGACTCTGAGGACAGGAGCAACACCAGGCTTGCATAAGTATCGAAGGCCGTGGAGGTTAAGGCTGCAGGCGCCCTCTCTATTAGGTTGTGTCTGCTGTATCCTCTCGTCCTTGGAGCTGCTCGGGTCCCTGAGATTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab