CircRNA Information

General Information
circRNA Basic Information
CircID chr1:35478966|35479212
Strand -
CircType exon
Host Gene ENSG00000142687.17;
Algorism find_circ;CIRI2;DCC;
Sequence GTCCACAAGGCGATTACAATTTCCAGTCCCCTAACCACAGACCTGACTGCAGAGCTGTCTGGTGGGCCAAAGAATGTATCAGTGCAACCTGAAATATCAGAGGGTCTTGCTACTACGCCCAGCACTCAACAAGTAAAAAGTTCTGAGAAAACCCAGATTGCTGTCCCCCAGCCAGTGGCTCCCTCCTACAGTTATGCTACCCCTACCCCCCAGGCCTCTTTCCAGAGCACCTCAGCACCATACCCAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:35478966|35479212 hsa-miR-29a-5p 0 0 1
chr1:35478966|35479212 hsa-miR-29a-3p 0 0 1
chr1:35478966|35479212 hsa-miR-148a-5p 0 0 1
chr1:35478966|35479212 hsa-miR-148a-3p 0 0 1
chr1:35478966|35479212 hsa-miR-130a-5p 0 0 1
chr1:35478966|35479212 hsa-miR-130a-3p 0 0 1
chr1:35478966|35479212 hsa-miR-152-5p 0 0 1
chr1:35478966|35479212 hsa-miR-152-3p 0 0 1
chr1:35478966|35479212 hsa-miR-186-5p 0 0 1
chr1:35478966|35479212 hsa-miR-186-3p 0 0 1
chr1:35478966|35479212 hsa-miR-29c-5p 0 0 1
chr1:35478966|35479212 hsa-miR-29c-3p 0 0 1
chr1:35478966|35479212 hsa-miR-301a-5p 0 0 1
chr1:35478966|35479212 hsa-miR-301a-3p 0 0 1
chr1:35478966|35479212 hsa-miR-130b-5p 0 0 1
chr1:35478966|35479212 hsa-miR-130b-3p 0 0 1
chr1:35478966|35479212 hsa-miR-148b-5p 0 0 1
chr1:35478966|35479212 hsa-miR-148b-3p 0 0 1
chr1:35478966|35479212 hsa-miR-431-5p 0 0 1
chr1:35478966|35479212 hsa-miR-431-3p 0 0 1
chr1:35478966|35479212 hsa-miR-539-5p 0 0 1
chr1:35478966|35479212 hsa-miR-539-3p 0 0 1
chr1:35478966|35479212 hsa-miR-575 0 0 1
chr1:35478966|35479212 hsa-miR-626 0 0 1
chr1:35478966|35479212 hsa-miR-454-5p 0 0 1
chr1:35478966|35479212 hsa-miR-454-3p 0 0 1
chr1:35478966|35479212 hsa-miR-541-5p 0 0 1
chr1:35478966|35479212 hsa-miR-541-3p 0 0 1
chr1:35478966|35479212 hsa-miR-301b-5p 0 0 1
chr1:35478966|35479212 hsa-miR-301b-3p 0 0 1
chr1:35478966|35479212 hsa-miR-1182 0 1 1
chr1:35478966|35479212 hsa-miR-1231 0 1 1
chr1:35478966|35479212 hsa-miR-139-5p 0 0 1
chr1:35478966|35479212 hsa-miR-145-5p 0 0 1
chr1:35478966|35479212 hsa-miR-767-5p 0 0 1
chr1:35478966|35479212 hsa-miR-361-5p 0 0 1
chr1:35478966|35479212 hsa-miR-193a-5p 0 0 1
chr1:35478966|35479212 hsa-miR-654-5p 1 1 1
chr1:35478966|35479212 hsa-miR-525-5p 0 0 1
chr1:35478966|35479212 hsa-miR-361-3p 0 1 1
chr1:35478966|35479212 hsa-miR-582-5p 0 1 1
chr1:35478966|35479212 hsa-miR-140-3p 1 0 1
chr1:35478966|35479212 hsa-miR-520a-5p 0 0 1
chr1:35478966|35479212 hsa-miR-509-3-5p 0 0 1
chr1:35478966|35479212 hsa-miR-509-5p 0 0 1
chr1:35478966|35479212 hsa-miR-29b 0 0 1
chr1:35478966|35479212 hsa-miR-892b 1 0 0
chr1:35478966|35479212 hsa-miR-665 1 0 0
chr1:35478966|35479212 hsa-miR-1470 1 0 0
chr1:35478966|35479212 hsa-miR-3666 0 1 0
chr1:35478966|35479212 hsa-miR-3943 1 0 0
chr1:35478966|35479212 hsa-miR-4741 1 0 0
chr1:35478966|35479212 hsa-miR-5193 1 0 0
chr1:35478966|35479212 hsa-miR-5693 0 1 0
chr1:35478966|35479212 hsa-miR-6084 1 0 0
chr1:35478966|35479212 hsa-miR-12119 0 1 0
chr1:35478966|35479212 hsa-miR-103a-2-5p 0 1 0
chr1:35478966|35479212 hsa-miR-140-5p 1 1 0
chr1:35478966|35479212 hsa-miR-6836-3p 1 0 0
chr1:35478966|35479212 hsa-miR-149-5p 1 0 0
chr1:35478966|35479212 hsa-miR-3677-5p 1 0 0
chr1:35478966|35479212 hsa-miR-6840-5p 1 0 0
chr1:35478966|35479212 hsa-miR-6762-3p 1 0 0
chr1:35478966|35479212 hsa-miR-6849-3p 1 0 0
chr1:35478966|35479212 hsa-miR-4728-3p 1 0 0
chr1:35478966|35479212 hsa-miR-6845-3p 1 0 0
chr1:35478966|35479212 hsa-miR-4697-3p 1 0 0
chr1:35478966|35479212 hsa-miR-6735-3p 1 0 0
chr1:35478966|35479212 hsa-miR-6882-3p 1 0 0
chr1:35478966|35479212 hsa-miR-6858-3p 1 0 0
chr1:35478966|35479212 hsa-miR-4713-5p 1 0 0
chr1:35478966|35479212 hsa-miR-6763-3p 1 0 0
chr1:35478966|35479212 hsa-miR-4640-5p 1 0 0
chr1:35478966|35479212 hsa-miR-7113-3p 1 0 0
chr1:35478966|35479212 hsa-miR-4667-3p 1 0 0
chr1:35478966|35479212 hsa-miR-6877-5p 1 0 0
chr1:35478966|35479212 hsa-miR-3678-3p 0 1 0
chr1:35478966|35479212 hsa-miR-4707-5p 1 0 0
chr1:35478966|35479212 hsa-miR-345-5p 1 0 0
chr1:35478966|35479212 hsa-miR-7106-3p 1 0 0
chr1:35478966|35479212 hsa-miR-3180-5p 0 1 0
chr1:35478966|35479212 hsa-miR-6741-3p 1 0 0
chr1:35478966|35479212 hsa-miR-6752-3p 1 0 0
chr1:35478966|35479212 hsa-miR-7848-3p 0 1 0
chr1:35478966|35479212 hsa-miR-5088-3p 1 0 0
chr1:35478966|35479212 hsa-miR-328-3p 1 0 0
chr1:35478966|35479212 hsa-miR-6501-3p 0 1 0
chr1:35478966|35479212 hsa-miR-6761-5p 0 1 0
chr1:35478966|35479212 hsa-miR-1227-3p 1 0 0
chr1:35478966|35479212 hsa-miR-7152-5p 0 1 0
chr1:35478966|35479212 hsa-miR-6798-3p 0 1 0
chr1:35478966|35479212 hsa-miR-1249-3p 1 0 0
chr1:35478966|35479212 hsa-miR-3162-3p 1 1 0
chr1:35478966|35479212 hsa-miR-5089-3p 0 1 0
chr1:35478966|35479212 hsa-miR-4650-5p 0 1 0
chr1:35478966|35479212 hsa-miR-6769b-5p 1 0 0
chr1:35478966|35479212 hsa-miR-6722-3p 1 0 0
chr1:35478966|35479212 hsa-miR-3127-3p 1 0 0
chr1:35478966|35479212 hsa-miR-4685-3p 1 0 0
chr1:35478966|35479212 hsa-miR-4726-5p 1 0 0
chr1:35478966|35479212 hsa-miR-939-5p 1 0 0
chr1:35478966|35479212 hsa-miR-10396a-3p 1 0 0
chr1:35478966|35479212 hsa-miR-10396b-3p 1 0 0
chr1:35478966|35479212 hsa-miR-10398-5p 1 1 0
chr1:35478966|35479212 hsa-miR-2682-3p 0 1 0
chr1:35478966|35479212 hsa-miR-6756-3p 1 0 0
chr1:35478966|35479212 hsa-miR-6801-3p 1 0 0
chr1:35478966|35479212 hsa-miR-6810-3p 1 0 0
chr1:35478966|35479212 hsa-miR-6829-3p 1 0 0
chr1:35478966|35479212 hsa-miR-1295b-5p 0 1 0
chr1:35478966|35479212 hsa-miR-4676-5p 0 1 0
chr1:35478966|35479212 hsa-miR-6781-3p 0 1 0
chr1:35478966|35479212 hsa-miR-103a-1-5p 0 1 0
chr1:35478966|35479212 hsa-miR-6820-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr1:35478966|35479212
ORF Type ORF1
Protein Length 28
Nucleotide Length 87
Protein Sequence MIFQVALIHSLAHQTALQSGLWLGDWKL
Nucleotide Sequence CTGATATTTCAGGTTGCACTGATACATTCTTTGGCCCACCAGACAGCTCTGCAGTCAGGTCTGTGGTTAGGGGACTGGAAATTGTAA
CircID chr1:35478966|35479212
ORF Type ORF2
Protein Length 42
Nucleotide Length 129
Protein Sequence MERGLGGRGSITVGGSHWLGDSNLGFLRTFYLLSAGRSSKTL
Nucleotide Sequence CTGGAAAGAGGCCTGGGGGGTAGGGGTAGCATAACTGTAGGAGGGAGCCACTGGCTGGGGGACAGCAATCTGGGTTTTCTCAGAACTTTTTACTTGTTGAGTGCTGGGCGTAGTAGCAAGACCCTCTGA
CircID chr1:35478966|35479212
ORF Type ORF3
Protein Length 40
Nucleotide Length 120
Protein Sequence MGVVARPSDISGCTDTFFGPPDSSAVRSVVRGLEIVIALW
Nucleotide Sequence CTGGGCGTAGTAGCAAGACCCTCTGATATTTCAGGTTGCACTGATACATTCTTTGGCCCACCAGACAGCTCTGCAGTCAGGTCTGTGGTTAGGGGACTGGAAATTGTAATCGCCTTGTGG
CircID chr1:35478966|35479212
ORF Type ORF4
Protein Length 68
Nucleotide Length 204
Protein Sequence MTAELSGGPKNVSVQPEISEGLATTPSTQQVKSSEKTQIAVPQPVAPSYSYATPTPQASFQSTSAPYP
Nucleotide Sequence CTGACTGCAGAGCTGTCTGGTGGGCCAAAGAATGTATCAGTGCAACCTGAAATATCAGAGGGTCTTGCTACTACGCCCAGCACTCAACAAGTAAAAAGTTCTGAGAAAACCCAGATTGCTGTCCCCCAGCCAGTGGCTCCCTCCTACAGTTATGCTACCCCTACCCCCCAGGCCTCTTTCCAGAGCACCTCAGCACCATACCCA
CircID chr1:35478966|35479212
ORF Type ORF5
Protein Length 29
Nucleotide Length 90
Protein Sequence MQSCLVGQRMYQCNLKYQRVLLLRPALNK
Nucleotide Sequence CTGCAGAGCTGTCTGGTGGGCCAAAGAATGTATCAGTGCAACCTGAAATATCAGAGGGTCTTGCTACTACGCCCAGCACTCAACAAGTAA
CircID chr1:35478966|35479212
ORF Type ORF6
Protein Length 35
Nucleotide Length 105
Protein Sequence MRKPRLLSPSQWLPPTVMLPLPPRPLSRAPQHHTQ
Nucleotide Sequence CTGAGAAAACCCAGATTGCTGTCCCCCAGCCAGTGGCTCCCTCCTACAGTTATGCTACCCCTACCCCCCAGGCCTCTTTCCAGAGCACCTCAGCACCATACCCAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr1:35478966|35479212 NOP56 0 3 0
chr1:35478966|35479212 ELAVL1 6 7 0
chr1:35478966|35479212 ELAVL3 0 1 0
chr1:35478966|35479212 SF3B4 2 0 0
chr1:35478966|35479212 PRPF8 0 1 0
chr1:35478966|35479212 FMR1 0 0 3
chr1:35478966|35479212 UPF1 2 0 0
chr1:35478966|35479212 CPSF7 1 0 0
chr1:35478966|35479212 CPSF6 1 0 0
chr1:35478966|35479212 NUDT21 1 1 0
chr1:35478966|35479212 CPSF3 1 0 0
chr1:35478966|35479212 RBM15B 1 0 0
chr1:35478966|35479212 TROVE2 0 0 1
chr1:35478966|35479212 FUS 0 1 0
chr1:35478966|35479212 NOP58 0 1 0
chr1:35478966|35479212 U2AF1 6 0 0
chr1:35478966|35479212 U2AF2 21 5 2
chr1:35478966|35479212 DDX54 0 0 2
chr1:35478966|35479212 DDX55 1 0 0
chr1:35478966|35479212 PCBP2 0 2 2
chr1:35478966|35479212 CPSF1 1 0 0
chr1:35478966|35479212 FIP1L1 1 0 0
chr1:35478966|35479212 PTBP1 7 0 0
chr1:35478966|35479212 HNRNPC 21 17 1
chr1:35478966|35479212 DDX3X 8 0 0
chr1:35478966|35479212 ZC3H7B 1 0 0
chr1:35478966|35479212 SMNDC1 1 0 0
chr1:35478966|35479212 HNRNPA1 1 2 0
chr1:35478966|35479212 RANGAP1 0 0 2
chr1:35478966|35479212 LIN28B 0 0 1
chr1:35478966|35479212 FXR1 0 0 1
chr1:35478966|35479212 FXR2 1 0 3
chr1:35478966|35479212 SND1 2 0 2
chr1:35478966|35479212 IGF2BP1 0 0 4
chr1:35478966|35479212 IGF2BP3 0 0 2
chr1:35478966|35479212 IGF2BP2 2 1 2
chr1:35478966|35479212 TARDBP 4 0 0
chr1:35478966|35479212 DDX24 1 0 0
chr1:35478966|35479212 CSTF2T 1 0 0
chr1:35478966|35479212 SRRM4 2 0 0
chr1:35478966|35479212 CSTF2 1 1 0
chr1:35478966|35479212 RBM27 0 0 1
chr1:35478966|35479212 PPIG 1 0 0
chr1:35478966|35479212 FBL 0 1 1
chr1:35478966|35479212 ATXN2 1 0 0
chr1:35478966|35479212 EIF4A3 0 2 3
chr1:35478966|35479212 AGO2 0 0 2
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab