CircRNA Information

General Information
circRNA Basic Information
CircID chr1:35602617|35602820
Strand +
CircType exon
Host Gene ENSG00000126067.10;
Algorism CIRI2;
Sequence ATGTAGTGAAAAATATTTCTTCCAGAGCTGGGTGTGGTGGCTCATACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGAGCGAGACCATCCTGACCAACATGGTAAAACCCCGTCTCTACTAAAAATACAAAAATTAGCTGGGCGTGGTGGCACGCACCCCTAGTCCCAGCTACTGGGGAGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:35602617|35602820 hsa-miR-17-5p 0 0 1
chr1:35602617|35602820 hsa-miR-17-3p 0 0 1
chr1:35602617|35602820 hsa-miR-20a-5p 0 0 1
chr1:35602617|35602820 hsa-miR-20a-3p 0 0 1
chr1:35602617|35602820 hsa-miR-93-5p 0 0 1
chr1:35602617|35602820 hsa-miR-93-3p 0 0 1
chr1:35602617|35602820 hsa-miR-106a-5p 0 0 1
chr1:35602617|35602820 hsa-miR-106a-3p 0 0 1
chr1:35602617|35602820 hsa-miR-192-5p 0 0 1
chr1:35602617|35602820 hsa-miR-192-3p 0 0 1
chr1:35602617|35602820 hsa-miR-215-5p 0 0 1
chr1:35602617|35602820 hsa-miR-215-3p 0 0 1
chr1:35602617|35602820 hsa-miR-150-5p 0 0 1
chr1:35602617|35602820 hsa-miR-150-3p 0 0 1
chr1:35602617|35602820 hsa-miR-106b-5p 0 0 1
chr1:35602617|35602820 hsa-miR-106b-3p 0 0 1
chr1:35602617|35602820 hsa-miR-302a-5p 0 0 1
chr1:35602617|35602820 hsa-miR-302a-3p 0 0 1
chr1:35602617|35602820 hsa-miR-302b-5p 0 0 1
chr1:35602617|35602820 hsa-miR-302b-3p 0 0 1
chr1:35602617|35602820 hsa-miR-302c-5p 0 0 1
chr1:35602617|35602820 hsa-miR-302c-3p 0 0 1
chr1:35602617|35602820 hsa-miR-302d-5p 0 0 1
chr1:35602617|35602820 hsa-miR-302d-3p 0 0 1
chr1:35602617|35602820 hsa-miR-372-5p 0 0 1
chr1:35602617|35602820 hsa-miR-372-3p 0 0 1
chr1:35602617|35602820 hsa-miR-373-5p 0 0 1
chr1:35602617|35602820 hsa-miR-373-3p 0 0 1
chr1:35602617|35602820 hsa-miR-20b-5p 0 0 1
chr1:35602617|35602820 hsa-miR-20b-3p 0 0 1
chr1:35602617|35602820 hsa-miR-520e-5p 0 0 1
chr1:35602617|35602820 hsa-miR-520e-3p 0 0 1
chr1:35602617|35602820 hsa-miR-520b-5p 0 0 1
chr1:35602617|35602820 hsa-miR-520b-3p 0 0 1
chr1:35602617|35602820 hsa-miR-519d-5p 0 0 1
chr1:35602617|35602820 hsa-miR-519d-3p 0 0 1
chr1:35602617|35602820 hsa-miR-520g-5p 0 0 1
chr1:35602617|35602820 hsa-miR-520g-3p 0 0 1
chr1:35602617|35602820 hsa-miR-520h 0 0 1
chr1:35602617|35602820 hsa-miR-552-5p 0 0 1
chr1:35602617|35602820 hsa-miR-552-3p 0 0 1
chr1:35602617|35602820 hsa-miR-411-5p 0 0 1
chr1:35602617|35602820 hsa-miR-411-3p 0 0 1
chr1:35602617|35602820 hsa-miR-1227-5p 0 0 1
chr1:35602617|35602820 hsa-miR-1227-3p 0 0 1
chr1:35602617|35602820 hsa-miR-1234-3p 0 0 1
chr1:35602617|35602820 hsa-miR-1299 0 0 1
chr1:35602617|35602820 hsa-miR-302e 0 0 1
chr1:35602617|35602820 hsa-miR-1234 0 0 1
chr1:35602617|35602820 hsa-miR-512-3p 0 0 1
chr1:35602617|35602820 hsa-miR-483-5p 0 0 1
chr1:35602617|35602820 hsa-miR-875-3p 0 0 1
chr1:35602617|35602820 hsa-miR-556-5p 0 0 1
chr1:35602617|35602820 hsa-miR-342-5p 0 0 1
chr1:35602617|35602820 hsa-miR-520d-3p 0 0 1
chr1:35602617|35602820 hsa-miR-520a-3p 0 0 1
chr1:35602617|35602820 hsa-miR-520c-3p 0 0 1
chr1:35602617|35602820 hsa-miR-590-3p 0 0 1
chr1:35602617|35602820 hsa-miR-7 0 0 1
chr1:35602617|35602820 hsa-miR-720 0 0 1
chr1:35602617|35602820 hsa-miR-762 1 0 0
chr1:35602617|35602820 hsa-miR-1303 1 0 0
chr1:35602617|35602820 hsa-miR-6765-5p 1 0 0
chr1:35602617|35602820 hsa-miR-4783-5p 1 0 0
chr1:35602617|35602820 hsa-miR-6848-3p 1 0 0
chr1:35602617|35602820 hsa-miR-619-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr1:35602617|35602820
ORF Type ORF1
Protein Length 52
Nucleotide Length 159
Protein Sequence MGVVAHTCNPSTLGGRGGRITRSRERDHPDQHGKTPSLLKIQKLAGRGGTHP
Nucleotide Sequence CTGGGTGTGGTGGCTCATACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGAGCGAGACCATCCTGACCAACATGGTAAAACCCCGTCTCTACTAAAAATACAAAAATTAGCTGGGCGTGGTGGCACGCACCCCTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab