CircRNA Information

General Information
circRNA Basic Information
CircID chr1:36340224|36340343
Strand +
CircType exon
Host Gene ENSG00000196182.9;
Algorism CIRI2;
Sequence CTTGGGCAAGTTCCCAAACCTCCTTGTGCCTCAGTTTCCCCATCTGGAAAAAATGGGGCCACCTCTTGCCAGCAGTAGCAGGGCTGCCCACGCCCCTTTCTCCCCATGCCCCATCCAGCA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:36340224|36340343 hsa-miR-31-5p 0 0 1
chr1:36340224|36340343 hsa-miR-31-3p 0 0 1
chr1:36340224|36340343 hsa-miR-939-5p 0 0 1
chr1:36340224|36340343 hsa-miR-939-3p 0 0 1
chr1:36340224|36340343 hsa-miR-663b 0 0 1
chr1:36340224|36340343 hsa-miR-1287-5p 0 0 1
chr1:36340224|36340343 hsa-miR-1287-3p 0 0 1
chr1:36340224|36340343 hsa-miR-1292-5p 0 0 1
chr1:36340224|36340343 hsa-miR-1292-3p 0 0 1
chr1:36340224|36340343 hsa-miR-1827 0 0 1
chr1:36340224|36340343 hsa-miR-486-3p 0 0 1
chr1:36340224|36340343 hsa-miR-525-5p 0 0 1
chr1:36340224|36340343 hsa-miR-520a-5p 0 0 1
chr1:36340224|36340343 hsa-miR-1268 0 0 1
chr1:36340224|36340343 hsa-miR-663a 1 0 0
chr1:36340224|36340343 hsa-miR-1268a 1 0 0
chr1:36340224|36340343 hsa-miR-2110 1 1 0
chr1:36340224|36340343 hsa-miR-2861 1 0 0
chr1:36340224|36340343 hsa-miR-3147 1 0 0
chr1:36340224|36340343 hsa-miR-3154 1 0 0
chr1:36340224|36340343 hsa-miR-3175 0 1 0
chr1:36340224|36340343 hsa-miR-3196 1 0 0
chr1:36340224|36340343 hsa-miR-3197 1 0 0
chr1:36340224|36340343 hsa-miR-4260 1 0 0
chr1:36340224|36340343 hsa-miR-4253 1 0 0
chr1:36340224|36340343 hsa-miR-4271 1 0 0
chr1:36340224|36340343 hsa-miR-3936 1 0 0
chr1:36340224|36340343 hsa-miR-3945 1 0 0
chr1:36340224|36340343 hsa-miR-1268b 1 1 0
chr1:36340224|36340343 hsa-miR-4440 1 0 0
chr1:36340224|36340343 hsa-miR-3135b 1 0 0
chr1:36340224|36340343 hsa-miR-4496 1 0 0
chr1:36340224|36340343 hsa-miR-2392 1 0 0
chr1:36340224|36340343 hsa-miR-4507 1 0 0
chr1:36340224|36340343 hsa-miR-4525 1 0 0
chr1:36340224|36340343 hsa-miR-4651 1 0 0
chr1:36340224|36340343 hsa-miR-4689 1 0 0
chr1:36340224|36340343 hsa-miR-4706 1 0 0
chr1:36340224|36340343 hsa-miR-4739 1 0 0
chr1:36340224|36340343 hsa-miR-4741 1 0 0
chr1:36340224|36340343 hsa-miR-4748 0 1 0
chr1:36340224|36340343 hsa-miR-5787 1 0 0
chr1:36340224|36340343 hsa-miR-6085 1 0 0
chr1:36340224|36340343 hsa-miR-6090 1 0 0
chr1:36340224|36340343 hsa-miR-8077 1 0 0
chr1:36340224|36340343 hsa-miR-8085 1 1 0
chr1:36340224|36340343 hsa-miR-12118 0 1 0
chr1:36340224|36340343 hsa-miR-92a-2-5p 1 0 0
chr1:36340224|36340343 hsa-miR-3194-3p 1 1 0
chr1:36340224|36340343 hsa-miR-6747-5p 1 0 0
chr1:36340224|36340343 hsa-miR-6765-5p 1 0 0
chr1:36340224|36340343 hsa-miR-671-5p 1 0 0
chr1:36340224|36340343 hsa-miR-3150a-3p 1 0 0
chr1:36340224|36340343 hsa-miR-6861-5p 1 0 0
chr1:36340224|36340343 hsa-miR-7106-5p 1 0 0
chr1:36340224|36340343 hsa-miR-6825-5p 1 0 0
chr1:36340224|36340343 hsa-miR-6894-5p 1 0 0
chr1:36340224|36340343 hsa-miR-6857-5p 1 0 0
chr1:36340224|36340343 hsa-miR-6728-5p 1 0 0
chr1:36340224|36340343 hsa-miR-3692-5p 0 1 0
chr1:36340224|36340343 hsa-miR-3622a-5p 1 0 0
chr1:36340224|36340343 hsa-miR-3934-5p 1 1 0
chr1:36340224|36340343 hsa-miR-1227-5p 1 0 0
chr1:36340224|36340343 hsa-miR-6746-5p 1 0 0
chr1:36340224|36340343 hsa-miR-6890-5p 1 0 0
chr1:36340224|36340343 hsa-miR-3622b-5p 1 1 0
chr1:36340224|36340343 hsa-miR-3189-5p 0 1 0
chr1:36340224|36340343 hsa-miR-6776-5p 1 0 0
chr1:36340224|36340343 hsa-miR-6742-5p 1 0 0
chr1:36340224|36340343 hsa-miR-6716-5p 1 0 0
chr1:36340224|36340343 hsa-miR-3151-5p 1 0 0
chr1:36340224|36340343 hsa-miR-3180-3p 1 0 0
chr1:36340224|36340343 hsa-miR-6798-5p 1 0 0
chr1:36340224|36340343 hsa-miR-6760-5p 1 0 0
chr1:36340224|36340343 hsa-miR-6881-5p 1 0 0
chr1:36340224|36340343 hsa-miR-6782-5p 1 0 0
chr1:36340224|36340343 hsa-miR-6810-5p 1 0 0
chr1:36340224|36340343 hsa-miR-6786-5p 1 0 0
chr1:36340224|36340343 hsa-miR-7109-5p 1 0 0
chr1:36340224|36340343 hsa-miR-6853-5p 0 1 0
chr1:36340224|36340343 hsa-miR-4738-3p 1 1 0
chr1:36340224|36340343 hsa-miR-185-5p 1 0 0
chr1:36340224|36340343 hsa-miR-1229-5p 1 0 0
chr1:36340224|36340343 hsa-miR-1228-5p 1 0 0
chr1:36340224|36340343 hsa-miR-6789-5p 1 0 0
chr1:36340224|36340343 hsa-miR-3675-5p 0 1 0
chr1:36340224|36340343 hsa-miR-6838-3p 0 1 0
chr1:36340224|36340343 hsa-miR-4763-3p 1 0 0
chr1:36340224|36340343 hsa-miR-6769b-5p 1 0 0
chr1:36340224|36340343 hsa-miR-6787-5p 1 0 0
chr1:36340224|36340343 hsa-miR-6812-5p 1 0 0
chr1:36340224|36340343 hsa-miR-6816-5p 1 0 0
chr1:36340224|36340343 hsa-miR-6870-5p 1 0 0
chr1:36340224|36340343 hsa-miR-6775-5p 1 1 0
chr1:36340224|36340343 hsa-miR-1343-5p 1 0 0
chr1:36340224|36340343 hsa-miR-6743-5p 1 0 0
chr1:36340224|36340343 hsa-miR-6756-5p 1 1 0
chr1:36340224|36340343 hsa-miR-6763-5p 1 0 0
chr1:36340224|36340343 hsa-miR-6779-5p 1 0 0
chr1:36340224|36340343 hsa-miR-4728-5p 1 0 0
chr1:36340224|36340343 hsa-miR-6780b-5p 1 0 0
chr1:36340224|36340343 hsa-miR-6862-5p 1 1 0
chr1:36340224|36340343 hsa-miR-10396b-5p 1 0 0
chr1:36340224|36340343 hsa-miR-10526-3p 0 1 0
chr1:36340224|36340343 hsa-miR-1237-5p 1 0 0
chr1:36340224|36340343 hsa-miR-1909-3p 1 0 0
chr1:36340224|36340343 hsa-miR-328-5p 1 0 0
chr1:36340224|36340343 hsa-miR-4632-5p 1 0 0
chr1:36340224|36340343 hsa-miR-4649-5p 1 0 0
chr1:36340224|36340343 hsa-miR-4745-5p 1 0 0
chr1:36340224|36340343 hsa-miR-6729-5p 1 0 0
chr1:36340224|36340343 hsa-miR-6795-5p 1 0 0
chr1:36340224|36340343 hsa-miR-6885-5p 1 0 0
chr1:36340224|36340343 hsa-miR-4758-5p 1 0 0
chr1:36340224|36340343 hsa-miR-6731-5p 1 0 0
chr1:36340224|36340343 hsa-miR-6799-3p 1 0 0
chr1:36340224|36340343 hsa-miR-4665-5p 1 0 0
chr1:36340224|36340343 hsa-miR-6855-5p 1 0 0
chr1:36340224|36340343 hsa-miR-4716-3p 1 0 0
chr1:36340224|36340343 hsa-miR-6766-5p 1 0 0
chr1:36340224|36340343 hsa-miR-9851-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr1:36340224|36340343
ORF Type ORF1
Protein Length 39
Nucleotide Length 117
Protein Sequence LGKFPNLLVPQFPHLEKMGPPLASSSRAAHAPFSPCPIQ
Nucleotide Sequence TTGGGCAAGTTCCCAAACCTCCTTGTGCCTCAGTTTCCCCATCTGGAAAAAATGGGGCCACCTCTTGCCAGCAGTAGCAGGGCTGCCCACGCCCCTTTCTCCCCATGCCCCATCCAG
CircID chr1:36340224|36340343
ORF Type ORF2
Protein Length 32
Nucleotide Length 96
Protein Sequence MCLSFPIWKKWGHLLPAVAGLPTPLSPHAPSS
Nucleotide Sequence TTGTGCCTCAGTTTCCCCATCTGGAAAAAATGGGGCCACCTCTTGCCAGCAGTAGCAGGGCTGCCCACGCCCCTTTCTCCCCATGCCCCATCCAGC
CircID chr1:36340224|36340343
ORF Type ORF3
Protein Length 27
Nucleotide Length 84
Protein Sequence MGHGEKGAWAALLLLARGGPIFSRWGN
Nucleotide Sequence ATGGGGCATGGGGAGAAAGGGGCGTGGGCAGCCCTGCTACTGCTGGCAAGAGGTGGCCCCATTTTTTCCAGATGGGGAAACTGA
CircID chr1:36340224|36340343
ORF Type ORF4
Protein Length 35
Nucleotide Length 105
Protein Sequence MGRKGRGQPCYCWQEVAPFFPDGETEAQGGLGTCP
Nucleotide Sequence ATGGGGAGAAAGGGGCGTGGGCAGCCCTGCTACTGCTGGCAAGAGGTGGCCCCATTTTTTCCAGATGGGGAAACTGAGGCACAAGGAGGTTTGGGAACTTGCCCA
CircID chr1:36340224|36340343
ORF Type ORF5
Protein Length 39
Nucleotide Length 117
Protein Sequence LDGAWGERGVGSPATAGKRWPHFFQMGKLRHKEVWELAQ
Nucleotide Sequence CTGGATGGGGCATGGGGAGAAAGGGGCGTGGGCAGCCCTGCTACTGCTGGCAAGAGGTGGCCCCATTTTTTCCAGATGGGGAAACTGAGGCACAAGGAGGTTTGGGAACTTGCCCAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab