CircRNA Information

General Information
circRNA Basic Information
CircID chr1:39969614|39969789
Strand +
CircType exon
Host Gene ENSG00000168389.16;
Algorism CIRI2;
Sequence AGTGGCAGCCCCAGGGCTTGGCCCCACAGGCAGGCAGAGGGGAGGCAGGAGGCCACAGAGCAGCCGGCCCCACAGTGAGCACAGCAAGTGTCCTGGGCCACCTCCTTGAGTCTTCAGTTCCCTTCCTAGCACCTGCAGTCCAGCTGCTCAGCAAGCCGGCAGACAGGTCCTGATCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:39969614|39969789 hsa-miR-346 1 1 1
chr1:39969614|39969789 hsa-miR-422a 0 1 1
chr1:39969614|39969789 hsa-miR-492 0 0 1
chr1:39969614|39969789 hsa-miR-632 0 0 1
chr1:39969614|39969789 hsa-miR-646 0 0 1
chr1:39969614|39969789 hsa-miR-657 0 0 1
chr1:39969614|39969789 hsa-miR-1178-5p 0 0 1
chr1:39969614|39969789 hsa-miR-1178-3p 0 0 1
chr1:39969614|39969789 hsa-miR-663b 1 0 1
chr1:39969614|39969789 hsa-miR-1205 0 0 1
chr1:39969614|39969789 hsa-miR-1208 0 0 1
chr1:39969614|39969789 hsa-miR-1288-5p 0 0 1
chr1:39969614|39969789 hsa-miR-1288-3p 0 0 1
chr1:39969614|39969789 hsa-miR-1197 0 0 1
chr1:39969614|39969789 hsa-miR-491-5p 0 0 1
chr1:39969614|39969789 hsa-miR-1207-3p 0 0 1
chr1:39969614|39969789 hsa-miR-628-5p 0 0 1
chr1:39969614|39969789 hsa-miR-509-3-5p 0 0 1
chr1:39969614|39969789 hsa-miR-509-5p 0 0 1
chr1:39969614|39969789 hsa-miR-378 0 0 1
chr1:39969614|39969789 hsa-miR-1269 0 0 1
chr1:39969614|39969789 hsa-miR-596 1 0 0
chr1:39969614|39969789 hsa-miR-1183 1 1 0
chr1:39969614|39969789 hsa-miR-1269a 0 1 0
chr1:39969614|39969789 hsa-miR-1538 1 1 0
chr1:39969614|39969789 hsa-miR-1913 1 0 0
chr1:39969614|39969789 hsa-miR-1976 0 1 0
chr1:39969614|39969789 hsa-miR-378c 0 1 0
chr1:39969614|39969789 hsa-miR-4288 0 1 0
chr1:39969614|39969789 hsa-miR-4292 0 1 0
chr1:39969614|39969789 hsa-miR-3652 1 0 0
chr1:39969614|39969789 hsa-miR-3665 1 1 0
chr1:39969614|39969789 hsa-miR-3907 1 0 0
chr1:39969614|39969789 hsa-miR-4421 0 1 0
chr1:39969614|39969789 hsa-miR-378h 0 1 0
chr1:39969614|39969789 hsa-miR-1269b 0 1 0
chr1:39969614|39969789 hsa-miR-4533 1 0 0
chr1:39969614|39969789 hsa-miR-378i 0 1 0
chr1:39969614|39969789 hsa-miR-1587 1 0 0
chr1:39969614|39969789 hsa-miR-4663 1 1 0
chr1:39969614|39969789 hsa-miR-4734 1 0 0
chr1:39969614|39969789 hsa-miR-4739 1 0 0
chr1:39969614|39969789 hsa-miR-4767 1 0 0
chr1:39969614|39969789 hsa-miR-6134 0 1 0
chr1:39969614|39969789 hsa-miR-6860 1 0 0
chr1:39969614|39969789 hsa-miR-8059 0 1 0
chr1:39969614|39969789 hsa-miR-134-3p 0 1 0
chr1:39969614|39969789 hsa-miR-6749-3p 1 0 0
chr1:39969614|39969789 hsa-miR-214-5p 0 1 0
chr1:39969614|39969789 hsa-miR-128-1-5p 0 1 0
chr1:39969614|39969789 hsa-miR-6840-3p 1 1 0
chr1:39969614|39969789 hsa-miR-504-3p 1 0 0
chr1:39969614|39969789 hsa-miR-6747-3p 1 1 0
chr1:39969614|39969789 hsa-miR-6836-3p 0 1 0
chr1:39969614|39969789 hsa-miR-6861-5p 1 0 0
chr1:39969614|39969789 hsa-miR-125a-3p 1 0 0
chr1:39969614|39969789 hsa-miR-3692-5p 1 0 0
chr1:39969614|39969789 hsa-miR-3934-5p 1 0 0
chr1:39969614|39969789 hsa-miR-1227-5p 0 1 0
chr1:39969614|39969789 hsa-miR-1301-3p 1 0 0
chr1:39969614|39969789 hsa-miR-6762-3p 0 1 0
chr1:39969614|39969789 hsa-miR-1915-5p 1 0 0
chr1:39969614|39969789 hsa-miR-3663-5p 1 0 0
chr1:39969614|39969789 hsa-miR-3151-5p 0 1 0
chr1:39969614|39969789 hsa-miR-3180-3p 1 0 0
chr1:39969614|39969789 hsa-miR-6796-5p 0 1 0
chr1:39969614|39969789 hsa-miR-185-3p 1 1 0
chr1:39969614|39969789 hsa-miR-6829-5p 1 0 0
chr1:39969614|39969789 hsa-miR-6732-5p 1 0 0
chr1:39969614|39969789 hsa-miR-1224-5p 1 1 0
chr1:39969614|39969789 hsa-miR-6882-3p 1 1 0
chr1:39969614|39969789 hsa-miR-615-3p 0 1 0
chr1:39969614|39969789 hsa-miR-6786-5p 1 0 0
chr1:39969614|39969789 hsa-miR-4763-5p 1 0 0
chr1:39969614|39969789 hsa-miR-6894-3p 1 0 0
chr1:39969614|39969789 hsa-miR-5001-3p 0 1 0
chr1:39969614|39969789 hsa-miR-3202 0 1 0
chr1:39969614|39969789 hsa-miR-6878-3p 0 1 0
chr1:39969614|39969789 hsa-miR-149-3p 1 0 0
chr1:39969614|39969789 hsa-miR-3158-5p 1 0 0
chr1:39969614|39969789 hsa-miR-2276-3p 1 0 0
chr1:39969614|39969789 hsa-miR-6886-5p 1 0 0
chr1:39969614|39969789 hsa-miR-4740-5p 1 0 0
chr1:39969614|39969789 hsa-miR-3120-5p 0 1 0
chr1:39969614|39969789 hsa-miR-5000-3p 0 1 0
chr1:39969614|39969789 hsa-miR-2276-5p 0 1 0
chr1:39969614|39969789 hsa-miR-4746-3p 1 0 0
chr1:39969614|39969789 hsa-miR-6826-3p 0 1 0
chr1:39969614|39969789 hsa-miR-4529-3p 1 0 0
chr1:39969614|39969789 hsa-miR-1207-5p 1 0 0
chr1:39969614|39969789 hsa-miR-6865-5p 0 1 0
chr1:39969614|39969789 hsa-miR-5001-5p 1 0 0
chr1:39969614|39969789 hsa-miR-6726-5p 1 0 0
chr1:39969614|39969789 hsa-miR-6803-5p 1 0 0
chr1:39969614|39969789 hsa-miR-6815-5p 0 1 0
chr1:39969614|39969789 hsa-miR-6851-5p 1 1 0
chr1:39969614|39969789 hsa-miR-1249-5p 1 0 0
chr1:39969614|39969789 hsa-miR-6751-5p 1 0 0
chr1:39969614|39969789 hsa-miR-6780a-5p 1 0 0
chr1:39969614|39969789 hsa-miR-6797-5p 1 0 0
chr1:39969614|39969789 hsa-miR-3127-3p 1 0 0
chr1:39969614|39969789 hsa-miR-3620-5p 1 0 0
chr1:39969614|39969789 hsa-miR-5196-5p 1 1 0
chr1:39969614|39969789 hsa-miR-1909-3p 1 0 0
chr1:39969614|39969789 hsa-miR-4632-5p 1 0 0
chr1:39969614|39969789 hsa-miR-6883-5p 1 0 0
chr1:39969614|39969789 hsa-miR-3187-5p 1 0 0
chr1:39969614|39969789 hsa-miR-939-5p 1 0 0
chr1:39969614|39969789 hsa-miR-6511b-5p 1 0 0
chr1:39969614|39969789 hsa-miR-1271-3p 1 0 0
chr1:39969614|39969789 hsa-miR-5008-3p 0 1 0
chr1:39969614|39969789 hsa-miR-6791-3p 0 1 0
chr1:39969614|39969789 hsa-miR-4646-5p 1 1 0
chr1:39969614|39969789 hsa-miR-6891-5p 0 1 0
chr1:39969614|39969789 hsa-miR-378a-3p 0 1 0
chr1:39969614|39969789 hsa-miR-6750-5p 0 1 0
chr1:39969614|39969789 hsa-miR-6791-5p 0 1 0
chr1:39969614|39969789 hsa-miR-6805-3p 1 1 0
chr1:39969614|39969789 hsa-miR-6829-3p 0 1 0
chr1:39969614|39969789 hsa-miR-3085-3p 1 1 0
chr1:39969614|39969789 hsa-miR-6859-5p 1 0 0
chr1:39969614|39969789 hsa-miR-10394-5p 1 1 0
chr1:39969614|39969789 hsa-miR-128-2-5p 0 1 0
chr1:39969614|39969789 hsa-miR-6807-3p 1 0 0
chr1:39969614|39969789 hsa-miR-6843-3p 0 1 0
chr1:39969614|39969789 hsa-miR-513c-5p 0 1 0
chr1:39969614|39969789 hsa-miR-5699-3p 0 1 0
chr1:39969614|39969789 hsa-miR-7157-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr1:39969614|39969789
ORF Type ORF1
Protein Length 51
Nucleotide Length 156
Protein Sequence MAPQAGRGEAGGHRAAGPTVSTASVLGHLLESSVPFLAPAVQLLSKPADRS
Nucleotide Sequence TTGGCCCCACAGGCAGGCAGAGGGGAGGCAGGAGGCCACAGAGCAGCCGGCCCCACAGTGAGCACAGCAAGTGTCCTGGGCCACCTCCTTGAGTCTTCAGTTCCCTTCCTAGCACCTGCAGTCCAGCTGCTCAGCAAGCCGGCAGACAGGTCCTGA
CircID chr1:39969614|39969789
ORF Type ORF2
Protein Length 55
Nucleotide Length 165
Protein Sequence MSAGLLSSWTAGARKGTEDSRRWPRTLAVLTVGPAALWPPASPLPACGAKPWGCH
Nucleotide Sequence CTGTCTGCCGGCTTGCTGAGCAGCTGGACTGCAGGTGCTAGGAAGGGAACTGAAGACTCAAGGAGGTGGCCCAGGACACTTGCTGTGCTCACTGTGGGGCCGGCTGCTCTGTGGCCTCCTGCCTCCCCTCTGCCTGCCTGTGGGGCCAAGCCCTGGGGCTGCCAC
CircID chr1:39969614|39969789
ORF Type ORF3
Protein Length 46
Nucleotide Length 138
Protein Sequence MQVLGRELKTQGGGPGHLLCSLWGRLLCGLLPPLCLPVGPSPGAAT
Nucleotide Sequence CTGCAGGTGCTAGGAAGGGAACTGAAGACTCAAGGAGGTGGCCCAGGACACTTGCTGTGCTCACTGTGGGGCCGGCTGCTCTGTGGCCTCCTGCCTCCCCTCTGCCTGCCTGTGGGGCCAAGCCCTGGGGCTGCCACT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab