CircRNA Information

General Information
circRNA Basic Information
CircID chr1:41037445|41037587
Strand +
CircType exon
Host Gene ENSG00000010803.15;
Algorism CIRI2;
Sequence TCTGGCAGTCCTTCTAAGCTCTAACTCTGGTTTTACTGTTTTTCAGGTGAAACCTTTGTCCTGGGGAATAGTCTGGCCCGCTCCTTGGAACCACACTCAGACTCAATGGACTCTGCCTCAAATCCCACCAACCTTGTCAGCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:41037445|41037587 hsa-miR-624-5p 0 0 1
chr1:41037445|41037587 hsa-miR-624-3p 0 0 1
chr1:41037445|41037587 hsa-miR-627-5p 0 0 1
chr1:41037445|41037587 hsa-miR-627-3p 0 0 1
chr1:41037445|41037587 hsa-miR-541-5p 0 0 1
chr1:41037445|41037587 hsa-miR-541-3p 0 0 1
chr1:41037445|41037587 hsa-miR-924 0 0 1
chr1:41037445|41037587 hsa-miR-1304-5p 0 0 1
chr1:41037445|41037587 hsa-miR-1304-3p 0 0 1
chr1:41037445|41037587 hsa-miR-1288-5p 0 0 1
chr1:41037445|41037587 hsa-miR-1288-3p 0 0 1
chr1:41037445|41037587 hsa-miR-1827 0 1 1
chr1:41037445|41037587 hsa-miR-574-5p 0 0 1
chr1:41037445|41037587 hsa-miR-654-5p 0 0 1
chr1:41037445|41037587 hsa-miR-628-5p 0 0 1
chr1:41037445|41037587 hsa-miR-3170 0 1 0
chr1:41037445|41037587 hsa-miR-3621 1 0 0
chr1:41037445|41037587 hsa-miR-3911 1 0 0
chr1:41037445|41037587 hsa-miR-4466 1 0 0
chr1:41037445|41037587 hsa-miR-4654 1 1 0
chr1:41037445|41037587 hsa-miR-4658 1 1 0
chr1:41037445|41037587 hsa-miR-4682 1 0 0
chr1:41037445|41037587 hsa-miR-4730 1 0 0
chr1:41037445|41037587 hsa-miR-6086 1 0 0
chr1:41037445|41037587 hsa-miR-8077 1 1 0
chr1:41037445|41037587 hsa-miR-9718 1 1 0
chr1:41037445|41037587 hsa-miR-92a-2-5p 1 0 0
chr1:41037445|41037587 hsa-miR-6765-5p 1 0 0
chr1:41037445|41037587 hsa-miR-6728-5p 1 0 0
chr1:41037445|41037587 hsa-miR-6820-5p 1 0 0
chr1:41037445|41037587 hsa-miR-6727-5p 1 0 0
chr1:41037445|41037587 hsa-miR-27b-5p 0 1 0
chr1:41037445|41037587 hsa-miR-6782-5p 1 0 0
chr1:41037445|41037587 hsa-miR-6874-5p 1 0 0
chr1:41037445|41037587 hsa-miR-6753-5p 1 0 0
chr1:41037445|41037587 hsa-miR-296-3p 1 0 0
chr1:41037445|41037587 hsa-let-7b-5p 1 0 0
chr1:41037445|41037587 hsa-miR-6823-5p 1 1 0
chr1:41037445|41037587 hsa-miR-937-5p 1 0 0
chr1:41037445|41037587 hsa-miR-4727-3p 1 0 0
chr1:41037445|41037587 hsa-miR-2355-5p 0 1 0
chr1:41037445|41037587 hsa-miR-5089-5p 0 1 0
chr1:41037445|41037587 hsa-miR-6731-3p 0 1 0
chr1:41037445|41037587 hsa-miR-4763-3p 1 0 0
chr1:41037445|41037587 hsa-miR-6769b-5p 1 0 0
chr1:41037445|41037587 hsa-miR-6778-5p 1 0 0
chr1:41037445|41037587 hsa-miR-6816-5p 1 0 0
chr1:41037445|41037587 hsa-miR-6743-5p 1 0 0
chr1:41037445|41037587 hsa-miR-6756-5p 1 1 0
chr1:41037445|41037587 hsa-miR-6769a-5p 1 0 0
chr1:41037445|41037587 hsa-miR-6803-5p 1 0 0
chr1:41037445|41037587 hsa-miR-10401-5p 1 0 0
chr1:41037445|41037587 hsa-miR-6808-5p 1 0 0
chr1:41037445|41037587 hsa-miR-4726-5p 1 0 0
chr1:41037445|41037587 hsa-miR-4745-5p 1 0 0
chr1:41037445|41037587 hsa-miR-6735-5p 1 0 0
chr1:41037445|41037587 hsa-miR-6831-5p 1 0 0
chr1:41037445|41037587 hsa-miR-4769-5p 0 1 0
chr1:41037445|41037587 hsa-miR-6511a-5p 1 1 0
chr1:41037445|41037587 hsa-miR-6855-5p 1 1 0
chr1:41037445|41037587 hsa-miR-6766-5p 1 0 0
chr1:41037445|41037587 hsa-miR-6790-5p 1 1 0
chr1:41037445|41037587 hsa-miR-9851-5p 1 1 0
chr1:41037445|41037587 hsa-miR-619-5p 1 1 0
chr1:41037445|41037587 hsa-miR-5579-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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circRNA Open Reading Frame (ORF)
CircID chr1:41037445|41037587
ORF Type ORF1
Protein Length 27
Nucleotide Length 81
Protein Sequence MGNSLARSLEPHSDSMDSASNPTNLVS
Nucleotide Sequence CTGGGGAATAGTCTGGCCCGCTCCTTGGAACCACACTCAGACTCAATGGACTCTGCCTCAAATCCCACCAACCTTGTCAGC

CircID chr1:41037445|41037587
ORF Type ORF2
Protein Length 47
Nucleotide Length 141
Protein Sequence LAVLLSSNSGFTVFQVKPLSWGIVWPAPWNHTQTQWTLPQIPPTLSA
Nucleotide Sequence CTGGCAGTCCTTCTAAGCTCTAACTCTGGTTTTACTGTTTTTCAGGTGAAACCTTTGTCCTGGGGAATAGTCTGGCCCGCTCCTTGGAACCACACTCAGACTCAATGGACTCTGCCTCAAATCCCACCAACCTTGTCAGCA

CircID chr1:41037445|41037587
ORF Type ORF3
Protein Length 35
Nucleotide Length 108
Protein Sequence MTRLVGFEAESIESECGSKERARLFPRTKVSPEKQ
Nucleotide Sequence CTGACAAGGTTGGTGGGATTTGAGGCAGAGTCCATTGAGTCTGAGTGTGGTTCCAAGGAGCGGGCCAGACTATTCCCCAGGACAAAGGTTTCACCTGAAAAACAGTAA

CircID chr1:41037445|41037587
ORF Type ORF4
Protein Length 35
Nucleotide Length 108
Protein Sequence MRQSPLSLSVVPRSGPDYSPGQRFHLKNSKTRVRA
Nucleotide Sequence TTGAGGCAGAGTCCATTGAGTCTGAGTGTGGTTCCAAGGAGCGGGCCAGACTATTCCCCAGGACAAAGGTTTCACCTGAAAAACAGTAAAACCAGAGTTAGAGCTTAG

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites