CircRNA Information

General Information
circRNA Basic Information
CircID chr1:41070595|41075451
Strand -
CircType exon
Host Gene ENSG00000010803.16;
Algorism find_circ;CIRI2;DCC;
Sequence TTGTGATTCCAAAGAATCCCTATCCTGCCTCCGATGTGAATACTGAGAAGCCCAGCATCCACAGCAGCACCAAAACTGTCTTGGAACATCAACCAGGGCAGAGGGGGCGTAAACCAGGAAAGAAGCGGGGCCGGACACCCAAGACCCTAATTTCCCATCCCATCTCTGCCCCATCCAAGACAGCTGAACCTTTGAAATTCCCAAAGAAGAGAGGTCCCAAACCTGGCAGCAAGGTAGAAAGGCTTTTAGCCAGACGTGGTGGCTCCTGCCTATAATCCCAACACTTTGGGAGGCCAAGGTAGGAGGATCGCTTGAGCAGGAGAAGTTCGAGACCAGCCTTGGCAATATAATGAGACCTCATCTCTACAAAAAATTTAAAAAGGAAACCTCGGACTTTGCTGAACCCACCACCTGCCTCACCAACAACCAGCACTCCTGAACCGGATACCAGCACTGTACCCCAGGATGCTGCCACCATCCCCAGCTCAGCCATGCAGGCCCCAACAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:41070595|41075451 hsa-miR-15a-5p 0 0 1
chr1:41070595|41075451 hsa-miR-15a-3p 0 0 1
chr1:41070595|41075451 hsa-miR-29a-5p 0 0 1
chr1:41070595|41075451 hsa-miR-29a-3p 0 0 1
chr1:41070595|41075451 hsa-miR-200b-5p 0 0 1
chr1:41070595|41075451 hsa-miR-200b-3p 0 0 1
chr1:41070595|41075451 hsa-miR-15b-5p 0 0 1
chr1:41070595|41075451 hsa-miR-15b-3p 0 0 1
chr1:41070595|41075451 hsa-miR-186-5p 0 0 1
chr1:41070595|41075451 hsa-miR-186-3p 0 0 1
chr1:41070595|41075451 hsa-miR-195-5p 0 0 1
chr1:41070595|41075451 hsa-miR-195-3p 0 0 1
chr1:41070595|41075451 hsa-miR-200c-5p 0 0 1
chr1:41070595|41075451 hsa-miR-200c-3p 0 0 1
chr1:41070595|41075451 hsa-miR-29c-5p 0 0 1
chr1:41070595|41075451 hsa-miR-29c-3p 0 0 1
chr1:41070595|41075451 hsa-miR-424-5p 0 0 1
chr1:41070595|41075451 hsa-miR-424-3p 0 0 1
chr1:41070595|41075451 hsa-miR-429 0 0 1
chr1:41070595|41075451 hsa-miR-431-5p 0 0 1
chr1:41070595|41075451 hsa-miR-431-3p 0 0 1
chr1:41070595|41075451 hsa-miR-432-5p 0 0 1
chr1:41070595|41075451 hsa-miR-432-3p 0 0 1
chr1:41070595|41075451 hsa-miR-497-5p 0 0 1
chr1:41070595|41075451 hsa-miR-497-3p 0 0 1
chr1:41070595|41075451 hsa-miR-585-5p 0 0 1
chr1:41070595|41075451 hsa-miR-585-3p 0 0 1
chr1:41070595|41075451 hsa-miR-634 0 1 1
chr1:41070595|41075451 hsa-miR-1323 0 1 1
chr1:41070595|41075451 hsa-miR-744-5p 0 0 1
chr1:41070595|41075451 hsa-miR-744-3p 0 0 1
chr1:41070595|41075451 hsa-miR-548e-5p 0 0 1
chr1:41070595|41075451 hsa-miR-548e-3p 0 0 1
chr1:41070595|41075451 hsa-miR-1253 0 0 1
chr1:41070595|41075451 hsa-miR-1257 0 0 1
chr1:41070595|41075451 hsa-miR-548g-5p 0 0 1
chr1:41070595|41075451 hsa-miR-548g-3p 0 0 1
chr1:41070595|41075451 hsa-miR-548o-3p 0 0 1
chr1:41070595|41075451 hsa-miR-548o 0 0 1
chr1:41070595|41075451 hsa-miR-197-3p 0 1 1
chr1:41070595|41075451 hsa-miR-182-5p 0 1 1
chr1:41070595|41075451 hsa-miR-885-3p 0 0 1
chr1:41070595|41075451 hsa-miR-490-3p 0 0 1
chr1:41070595|41075451 hsa-miR-628-5p 0 0 1
chr1:41070595|41075451 hsa-miR-338-3p 0 0 1
chr1:41070595|41075451 hsa-miR-324-3p 0 0 1
chr1:41070595|41075451 hsa-miR-483-3p 0 0 1
chr1:41070595|41075451 hsa-miR-548a-3p 0 0 1
chr1:41070595|41075451 hsa-miR-220b 0 0 1
chr1:41070595|41075451 hsa-miR-16 0 0 1
chr1:41070595|41075451 hsa-miR-548f 0 0 1
chr1:41070595|41075451 hsa-miR-1300 0 0 1
chr1:41070595|41075451 hsa-miR-203 0 0 1
chr1:41070595|41075451 hsa-miR-29b 0 0 1
chr1:41070595|41075451 hsa-miR-583 0 1 0
chr1:41070595|41075451 hsa-miR-663a 1 0 0
chr1:41070595|41075451 hsa-miR-762 1 0 0
chr1:41070595|41075451 hsa-miR-1913 0 1 0
chr1:41070595|41075451 hsa-miR-3125 0 1 0
chr1:41070595|41075451 hsa-miR-1260b 1 0 0
chr1:41070595|41075451 hsa-miR-4258 1 0 0
chr1:41070595|41075451 hsa-miR-3917 0 1 0
chr1:41070595|41075451 hsa-miR-4508 1 0 0
chr1:41070595|41075451 hsa-miR-4533 1 1 0
chr1:41070595|41075451 hsa-miR-451b 0 1 0
chr1:41070595|41075451 hsa-miR-6072 0 1 0
chr1:41070595|41075451 hsa-miR-8073 1 1 0
chr1:41070595|41075451 hsa-miR-6747-3p 0 1 0
chr1:41070595|41075451 hsa-miR-3157-5p 0 1 0
chr1:41070595|41075451 hsa-miR-6765-5p 1 0 0
chr1:41070595|41075451 hsa-miR-671-5p 1 0 0
chr1:41070595|41075451 hsa-miR-6089 1 0 0
chr1:41070595|41075451 hsa-miR-197-5p 0 1 0
chr1:41070595|41075451 hsa-miR-3189-5p 0 1 0
chr1:41070595|41075451 hsa-miR-4728-3p 0 1 0
chr1:41070595|41075451 hsa-miR-6882-3p 1 0 0
chr1:41070595|41075451 hsa-miR-6884-3p 1 0 0
chr1:41070595|41075451 hsa-miR-4763-5p 1 0 0
chr1:41070595|41075451 hsa-miR-1247-5p 0 1 0
chr1:41070595|41075451 hsa-miR-3944-3p 1 0 0
chr1:41070595|41075451 hsa-miR-6753-5p 1 1 0
chr1:41070595|41075451 hsa-miR-4715-3p 0 1 0
chr1:41070595|41075451 hsa-miR-652-5p 1 0 0
chr1:41070595|41075451 hsa-miR-6830-5p 0 1 0
chr1:41070595|41075451 hsa-miR-6776-3p 1 0 0
chr1:41070595|41075451 hsa-miR-6781-5p 0 1 0
chr1:41070595|41075451 hsa-miR-3065-3p 0 1 0
chr1:41070595|41075451 hsa-miR-4707-5p 1 0 0
chr1:41070595|41075451 hsa-miR-4695-3p 1 0 0
chr1:41070595|41075451 hsa-miR-1226-3p 0 1 0
chr1:41070595|41075451 hsa-miR-6804-3p 0 1 0
chr1:41070595|41075451 hsa-miR-1910-5p 1 0 0
chr1:41070595|41075451 hsa-miR-1224-3p 1 0 0
chr1:41070595|41075451 hsa-miR-383-3p 0 1 0
chr1:41070595|41075451 hsa-miR-6868-5p 0 1 0
chr1:41070595|41075451 hsa-miR-3151-3p 1 0 0
chr1:41070595|41075451 hsa-miR-6883-3p 0 1 0
chr1:41070595|41075451 hsa-miR-4433a-5p 1 0 0
chr1:41070595|41075451 hsa-miR-1229-3p 1 0 0
chr1:41070595|41075451 hsa-miR-6729-3p 0 1 0
chr1:41070595|41075451 hsa-miR-6790-3p 1 0 0
chr1:41070595|41075451 hsa-miR-6750-3p 1 1 0
chr1:41070595|41075451 hsa-miR-5002-3p 1 0 0
chr1:41070595|41075451 hsa-miR-16-5p 0 1 0
chr1:41070595|41075451 hsa-miR-6816-5p 1 0 0
chr1:41070595|41075451 hsa-miR-6775-5p 1 1 0
chr1:41070595|41075451 hsa-miR-6752-5p 1 1 0
chr1:41070595|41075451 hsa-miR-6803-5p 1 0 0
chr1:41070595|41075451 hsa-miR-6879-5p 0 1 0
chr1:41070595|41075451 hsa-miR-6754-3p 1 0 0
chr1:41070595|41075451 hsa-miR-10396a-5p 1 1 0
chr1:41070595|41075451 hsa-miR-10396b-5p 1 0 0
chr1:41070595|41075451 hsa-miR-1237-5p 1 0 0
chr1:41070595|41075451 hsa-miR-4632-5p 0 1 0
chr1:41070595|41075451 hsa-miR-4685-5p 0 1 0
chr1:41070595|41075451 hsa-miR-6735-5p 0 1 0
chr1:41070595|41075451 hsa-miR-4436b-3p 0 1 0
chr1:41070595|41075451 hsa-miR-7843-5p 0 1 0
chr1:41070595|41075451 hsa-miR-1914-3p 1 1 0
chr1:41070595|41075451 hsa-miR-6784-3p 1 0 0
chr1:41070595|41075451 hsa-miR-6837-5p 0 1 0
chr1:41070595|41075451 hsa-miR-6511b-3p 1 0 0
chr1:41070595|41075451 hsa-miR-7114-3p 1 0 0
chr1:41070595|41075451 hsa-miR-6859-5p 0 1 0
chr1:41070595|41075451 hsa-miR-128-2-5p 0 1 0
chr1:41070595|41075451 hsa-miR-6838-5p 0 1 0
chr1:41070595|41075451 hsa-miR-6811-5p 0 1 0
chr1:41070595|41075451 hsa-miR-4524a-5p 0 1 0
chr1:41070595|41075451 hsa-miR-5571-5p 0 1 0
chr1:41070595|41075451 hsa-miR-4524b-5p 0 1 0
chr1:41070595|41075451 hsa-miR-7157-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr1:41070595|41075451
ORF Type ORF1
Protein Length 120
Nucleotide Length 360
Protein Sequence LLGPAWLSWGWWQHPGVQCWYPVQECWLLVRQVVGSAKSEVSSCCQVWDLSSLGISKVQLSWMGQRWDGKLGSWVSGPASFLVYAPSALVDVPRQFWCCCGCWASQYSHRRQDRDSLESQ
Nucleotide Sequence CTGTTGGGGCCTGCATGGCTGAGCTGGGGATGGTGGCAGCATCCTGGGGTACAGTGCTGGTATCCGGTTCAGGAGTGCTGGTTGTTGGTGAGGCAGGTGGTGGGTTCAGCAAAGTCCGAGGTTTCCTCTTGCTGCCAGGTTTGGGACCTCTCTTCTTTGGGAATTTCAAAGGTTCAGCTGTCTTGGATGGGGCAGAGATGGGATGGGAAATTAGGGTCTTGGGTGTCCGGCCCCGCTTCTTTCCTGGTTTACGCCCCCTCTGCCCTGGTTGATGTTCCAAGACAGTTTTGGTGCTGCTGTGGATGCTGGGCTTCTCAGTATTCACATCGGAGGCAGGATAGGGATTCTTTGGAATCACAA
CircID chr1:41070595|41075451
ORF Type ORF2
Protein Length 33
Nucleotide Length 99
Protein Sequence MPWLMFQDSFGAAVDAGLLSIHIGGRIGILWNH
Nucleotide Sequence CTGCCCTGGTTGATGTTCCAAGACAGTTTTGGTGCTGCTGTGGATGCTGGGCTTCTCAGTATTCACATCGGAGGCAGGATAGGGATTCTTTGGAATCAC
CircID chr1:41070595|41075451
ORF Type ORF3
Protein Length 85
Nucleotide Length 258
Protein Sequence MAELGMVAASWGTVLVSGSGVLVVGEAGGGFSKVRGFLLLPGLGPLFFGNFKGSAVLDGAEMGWEIRVLGVRPRFFPGLRPLCPG
Nucleotide Sequence ATGGCTGAGCTGGGGATGGTGGCAGCATCCTGGGGTACAGTGCTGGTATCCGGTTCAGGAGTGCTGGTTGTTGGTGAGGCAGGTGGTGGGTTCAGCAAAGTCCGAGGTTTCCTCTTGCTGCCAGGTTTGGGACCTCTCTTCTTTGGGAATTTCAAAGGTTCAGCTGTCTTGGATGGGGCAGAGATGGGATGGGAAATTAGGGTCTTGGGTGTCCGGCCCCGCTTCTTTCCTGGTTTACGCCCCCTCTGCCCTGGTTGA
CircID chr1:41070595|41075451
ORF Type ORF4
Protein Length 35
Nucleotide Length 108
Protein Sequence MRSPASTAAPKLSWNINQGRGGVNQERSGAGHPRP
Nucleotide Sequence CTGAGAAGCCCAGCATCCACAGCAGCACCAAAACTGTCTTGGAACATCAACCAGGGCAGAGGGGGCGTAAACCAGGAAAGAAGCGGGGCCGGACACCCAAGACCCTAA
CircID chr1:41070595|41075451
ORF Type ORF5
Protein Length 32
Nucleotide Length 96
Protein Sequence MPHQQPALLNRIPALYPRMLPPSPAQPCRPQQ
Nucleotide Sequence CTGCCTCACCAACAACCAGCACTCCTGAACCGGATACCAGCACTGTACCCCAGGATGCTGCCACCATCCCCAGCTCAGCCATGCAGGCCCCAACAG
CircID chr1:41070595|41075451
ORF Type ORF6
Protein Length 93
Nucleotide Length 279
Protein Sequence MEHQPGQRGRKPGKKRGRTPKTLISHPISAPSKTAEPLKFPKKRGPKPGSKRKPRTLLNPPPASPTTSTPEPDTSTVPQDAATIPSSAMQAPT
Nucleotide Sequence TTGGAACATCAACCAGGGCAGAGGGGGCGTAAACCAGGAAAGAAGCGGGGCCGGACACCCAAGACCCTAATTTCCCATCCCATCTCTGCCCCATCCAAGACAGCTGAACCTTTGAAATTCCCAAAGAAGAGAGGTCCCAAACCTGGCAGCAAGAGGAAACCTCGGACTTTGCTGAACCCACCACCTGCCTCACCAACAACCAGCACTCCTGAACCGGATACCAGCACTGTACCCCAGGATGCTGCCACCATCCCCAGCTCAGCCATGCAGGCCCCAACA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr1:41070595|41075451 NOP56 0 1 2
chr1:41070595|41075451 MOV10 1 0 1
chr1:41070595|41075451 ELAVL1 1 2 3
chr1:41070595|41075451 PRPF8 0 0 1
chr1:41070595|41075451 YTHDF1 0 0 2
chr1:41070595|41075451 UPF1 0 1 2
chr1:41070595|41075451 CPSF7 0 0 2
chr1:41070595|41075451 CNBP 0 1 0
chr1:41070595|41075451 FUS 1 1 0
chr1:41070595|41075451 DGCR8 0 0 1
chr1:41070595|41075451 SRSF1 1 0 2
chr1:41070595|41075451 NOP58 0 3 1
chr1:41070595|41075451 U2AF2 4 0 7
chr1:41070595|41075451 DDX54 0 1 5
chr1:41070595|41075451 AKAP8L 0 0 2
chr1:41070595|41075451 GRWD1 0 0 1
chr1:41070595|41075451 HNRNPL 0 0 1
chr1:41070595|41075451 PTBP1 0 1 2
chr1:41070595|41075451 HNRNPC 0 0 5
chr1:41070595|41075451 DHX9 1 0 6
chr1:41070595|41075451 HNRNPA1 0 0 1
chr1:41070595|41075451 LIN28B 0 1 0
chr1:41070595|41075451 IGF2BP1 0 0 5
chr1:41070595|41075451 IGF2BP3 0 0 4
chr1:41070595|41075451 IGF2BP2 1 0 16
chr1:41070595|41075451 YTHDC1 0 0 1
chr1:41070595|41075451 GTF2F1 0 0 3
chr1:41070595|41075451 RBM47 0 0 1
chr1:41070595|41075451 CSTF2T 0 1 1
chr1:41070595|41075451 VIM 0 0 1
chr1:41070595|41075451 TARBP2 0 0 4
chr1:41070595|41075451 EIF4A3 3 5 4
chr1:41070595|41075451 ILF3 0 0 1
chr1:41070595|41075451 FBL 2 1 7
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab