CircRNA Information

General Information
circRNA Basic Information
CircID chr1:43166826|43167223
Strand -
CircType exon
Host Gene ENSG00000117395.9;
Algorism CIRI2;
Sequence CCCTTCCTCATCTGCTGGCCTTTGGCTCCTGCCTTCTTGCGCTGTGCCAGAGGTTTCTGATCTCCCTCAAGGAAATCCAGTTTATCAGAGAAGCCTGTAAGTGAAGAAGTAGTTTTGATCAGCACCATTGTATTTTAAGAATAAAAGTTTAAACCACCATATGAGGCTGTTATTTGCTACACTGATTTTAAGAGTCACATCCTGCTCTCCAACACCATTCCCAAAACTTTGATCCGACAGGTCCACATCAACCAAGAAGGCTCCAAAGCACTAAGTGTTCAAATCAACTCTAAAGTACCTGCTACCCTCGTTCCCCTATTAGAGATGTACCAACCTTTCTGATATTTCTTAATAGCATTCATCATATGGGCTTTCTCCTGCTGCCTCTTCTGAAGAAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:43166826|43167223 hsa-miR-214-5p 0 0 1
chr1:43166826|43167223 hsa-miR-214-3p 0 0 1
chr1:43166826|43167223 hsa-miR-134-5p 0 0 1
chr1:43166826|43167223 hsa-miR-134-3p 0 0 1
chr1:43166826|43167223 hsa-miR-185-5p 0 0 1
chr1:43166826|43167223 hsa-miR-185-3p 0 0 1
chr1:43166826|43167223 hsa-miR-383-5p 0 0 1
chr1:43166826|43167223 hsa-miR-383-3p 0 0 1
chr1:43166826|43167223 hsa-miR-412-5p 0 0 1
chr1:43166826|43167223 hsa-miR-412-3p 0 0 1
chr1:43166826|43167223 hsa-miR-492 1 1 1
chr1:43166826|43167223 hsa-miR-520f-5p 0 0 1
chr1:43166826|43167223 hsa-miR-520f-3p 0 0 1
chr1:43166826|43167223 hsa-miR-520g-5p 0 0 1
chr1:43166826|43167223 hsa-miR-520g-3p 0 0 1
chr1:43166826|43167223 hsa-miR-520h 0 0 1
chr1:43166826|43167223 hsa-miR-561-5p 0 0 1
chr1:43166826|43167223 hsa-miR-561-3p 0 0 1
chr1:43166826|43167223 hsa-miR-563 0 0 1
chr1:43166826|43167223 hsa-miR-600 0 0 1
chr1:43166826|43167223 hsa-miR-606 0 0 1
chr1:43166826|43167223 hsa-miR-620 0 0 1
chr1:43166826|43167223 hsa-miR-1323 0 0 1
chr1:43166826|43167223 hsa-miR-922 0 0 1
chr1:43166826|43167223 hsa-miR-940 0 0 1
chr1:43166826|43167223 hsa-miR-942-5p 0 0 1
chr1:43166826|43167223 hsa-miR-942-3p 0 0 1
chr1:43166826|43167223 hsa-miR-1290 0 0 1
chr1:43166826|43167223 hsa-miR-1303 0 0 1
chr1:43166826|43167223 hsa-miR-1243 0 0 1
chr1:43166826|43167223 hsa-miR-1248 0 0 1
chr1:43166826|43167223 hsa-miR-548g-5p 0 0 1
chr1:43166826|43167223 hsa-miR-548g-3p 0 0 1
chr1:43166826|43167223 hsa-miR-1263 0 0 1
chr1:43166826|43167223 hsa-miR-1265 0 0 1
chr1:43166826|43167223 hsa-miR-548o-3p 0 0 1
chr1:43166826|43167223 hsa-miR-1270 0 0 1
chr1:43166826|43167223 hsa-miR-1272 0 0 1
chr1:43166826|43167223 hsa-miR-548p 0 0 1
chr1:43166826|43167223 hsa-miR-1292-5p 0 0 1
chr1:43166826|43167223 hsa-miR-1292-3p 0 0 1
chr1:43166826|43167223 hsa-miR-1322 0 0 1
chr1:43166826|43167223 hsa-miR-1827 0 1 1
chr1:43166826|43167223 hsa-miR-548o 0 0 1
chr1:43166826|43167223 hsa-miR-512-3p 0 0 1
chr1:43166826|43167223 hsa-miR-127-3p 0 0 1
chr1:43166826|43167223 hsa-miR-361-5p 0 0 1
chr1:43166826|43167223 hsa-miR-502-5p 0 0 1
chr1:43166826|43167223 hsa-miR-876-3p 0 1 1
chr1:43166826|43167223 hsa-miR-299-5p 0 0 1
chr1:43166826|43167223 hsa-miR-876-5p 0 1 1
chr1:43166826|43167223 hsa-miR-323-5p 0 0 1
chr1:43166826|43167223 hsa-miR-768-5p 0 0 1
chr1:43166826|43167223 hsa-miR-219-1-3p 0 0 1
chr1:43166826|43167223 hsa-miR-761 0 1 0
chr1:43166826|43167223 hsa-miR-1268a 1 0 0
chr1:43166826|43167223 hsa-miR-2278 1 1 0
chr1:43166826|43167223 hsa-miR-2861 1 0 0
chr1:43166826|43167223 hsa-miR-3132 1 0 0
chr1:43166826|43167223 hsa-miR-3138 1 0 0
chr1:43166826|43167223 hsa-miR-3147 1 0 0
chr1:43166826|43167223 hsa-miR-3154 1 0 0
chr1:43166826|43167223 hsa-miR-378c 1 0 0
chr1:43166826|43167223 hsa-miR-4280 0 1 0
chr1:43166826|43167223 hsa-miR-3612 0 1 0
chr1:43166826|43167223 hsa-miR-3665 1 0 0
chr1:43166826|43167223 hsa-miR-3911 1 0 0
chr1:43166826|43167223 hsa-miR-1268b 1 0 0
chr1:43166826|43167223 hsa-miR-4491 0 1 0
chr1:43166826|43167223 hsa-miR-4510 0 1 0
chr1:43166826|43167223 hsa-miR-4530 1 1 0
chr1:43166826|43167223 hsa-miR-4533 1 0 0
chr1:43166826|43167223 hsa-miR-4535 0 1 0
chr1:43166826|43167223 hsa-miR-4654 1 0 0
chr1:43166826|43167223 hsa-miR-4688 1 1 0
chr1:43166826|43167223 hsa-miR-4754 1 0 0
chr1:43166826|43167223 hsa-miR-5093 1 0 0
chr1:43166826|43167223 hsa-miR-5192 1 0 0
chr1:43166826|43167223 hsa-miR-5572 1 0 0
chr1:43166826|43167223 hsa-miR-6090 1 1 0
chr1:43166826|43167223 hsa-miR-6133 1 0 0
chr1:43166826|43167223 hsa-miR-6165 0 1 0
chr1:43166826|43167223 hsa-miR-12115 1 0 0
chr1:43166826|43167223 hsa-miR-12131 0 1 0
chr1:43166826|43167223 hsa-miR-22-5p 0 1 0
chr1:43166826|43167223 hsa-miR-150-3p 0 1 0
chr1:43166826|43167223 hsa-miR-4433b-3p 1 0 0
chr1:43166826|43167223 hsa-miR-92a-2-5p 1 0 0
chr1:43166826|43167223 hsa-miR-4433a-3p 1 0 0
chr1:43166826|43167223 hsa-miR-6765-5p 1 0 0
chr1:43166826|43167223 hsa-miR-671-5p 1 0 0
chr1:43166826|43167223 hsa-miR-7106-5p 1 0 0
chr1:43166826|43167223 hsa-miR-219a-1-3p 0 1 0
chr1:43166826|43167223 hsa-miR-6510-5p 1 0 0
chr1:43166826|43167223 hsa-miR-6728-5p 1 0 0
chr1:43166826|43167223 hsa-miR-6804-5p 1 0 0
chr1:43166826|43167223 hsa-miR-6757-5p 1 0 0
chr1:43166826|43167223 hsa-miR-4695-5p 1 1 0
chr1:43166826|43167223 hsa-miR-4722-5p 0 1 0
chr1:43166826|43167223 hsa-miR-6730-5p 1 0 0
chr1:43166826|43167223 hsa-miR-4753-5p 0 1 0
chr1:43166826|43167223 hsa-miR-6741-5p 1 0 0
chr1:43166826|43167223 hsa-miR-6727-5p 1 0 0
chr1:43166826|43167223 hsa-miR-197-5p 1 0 0
chr1:43166826|43167223 hsa-miR-6716-5p 1 1 0
chr1:43166826|43167223 hsa-miR-6796-5p 1 0 0
chr1:43166826|43167223 hsa-miR-6798-5p 1 0 0
chr1:43166826|43167223 hsa-miR-2467-3p 1 0 0
chr1:43166826|43167223 hsa-miR-1226-5p 1 0 0
chr1:43166826|43167223 hsa-miR-6740-5p 1 0 0
chr1:43166826|43167223 hsa-miR-4738-3p 1 0 0
chr1:43166826|43167223 hsa-miR-885-3p 1 0 0
chr1:43166826|43167223 hsa-let-7b-5p 1 0 0
chr1:43166826|43167223 hsa-miR-4732-5p 1 0 0
chr1:43166826|43167223 hsa-miR-6749-5p 1 0 0
chr1:43166826|43167223 hsa-miR-6847-5p 1 0 0
chr1:43166826|43167223 hsa-miR-4787-5p 1 0 0
chr1:43166826|43167223 hsa-miR-149-3p 1 0 0
chr1:43166826|43167223 hsa-miR-6824-5p 1 1 0
chr1:43166826|43167223 hsa-miR-6789-5p 1 0 0
chr1:43166826|43167223 hsa-miR-3162-5p 1 0 0
chr1:43166826|43167223 hsa-miR-6878-5p 0 1 0
chr1:43166826|43167223 hsa-miR-5010-5p 1 0 0
chr1:43166826|43167223 hsa-miR-4800-5p 1 0 0
chr1:43166826|43167223 hsa-let-7c-5p 1 0 0
chr1:43166826|43167223 hsa-miR-4778-3p 0 1 0
chr1:43166826|43167223 hsa-miR-3614-3p 0 1 0
chr1:43166826|43167223 hsa-miR-576-3p 1 0 0
chr1:43166826|43167223 hsa-miR-1207-5p 1 0 0
chr1:43166826|43167223 hsa-miR-4763-3p 1 0 0
chr1:43166826|43167223 hsa-miR-6865-5p 1 0 0
chr1:43166826|43167223 hsa-miR-6893-5p 1 0 0
chr1:43166826|43167223 hsa-miR-1343-5p 1 0 0
chr1:43166826|43167223 hsa-miR-6743-5p 1 0 0
chr1:43166826|43167223 hsa-miR-6722-3p 1 0 0
chr1:43166826|43167223 hsa-miR-6763-5p 1 0 0
chr1:43166826|43167223 hsa-miR-6797-5p 1 0 0
chr1:43166826|43167223 hsa-miR-6879-5p 1 0 0
chr1:43166826|43167223 hsa-miR-7111-5p 1 0 0
chr1:43166826|43167223 hsa-miR-4728-5p 1 0 0
chr1:43166826|43167223 hsa-miR-5196-5p 1 0 0
chr1:43166826|43167223 hsa-miR-6780b-5p 1 0 0
chr1:43166826|43167223 hsa-miR-328-5p 1 0 0
chr1:43166826|43167223 hsa-miR-4632-5p 1 0 0
chr1:43166826|43167223 hsa-miR-6794-5p 1 0 0
chr1:43166826|43167223 hsa-miR-6883-5p 1 0 0
chr1:43166826|43167223 hsa-miR-939-5p 1 0 0
chr1:43166826|43167223 hsa-miR-6731-5p 1 0 0
chr1:43166826|43167223 hsa-miR-4665-5p 1 0 0
chr1:43166826|43167223 hsa-miR-4700-5p 1 0 0
chr1:43166826|43167223 hsa-miR-4747-5p 1 0 0
chr1:43166826|43167223 hsa-miR-6785-5p 1 0 0
chr1:43166826|43167223 hsa-miR-6724-5p 1 0 0
chr1:43166826|43167223 hsa-miR-5009-5p 1 0 0
chr1:43166826|43167223 hsa-miR-320a-3p 1 0 0
chr1:43166826|43167223 hsa-miR-320b 1 0 0
chr1:43166826|43167223 hsa-miR-320c 1 0 0
chr1:43166826|43167223 hsa-miR-6859-5p 1 0 0
chr1:43166826|43167223 hsa-miR-151a-3p 1 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr1:43166826|43167223
ORF Type ORF1
Protein Length 46
Nucleotide Length 141
Protein Sequence MLSNTIPKTLIRQVHINQEGSKALSVQINSKVPATLVPLLEMYQPF
Nucleotide Sequence CTGCTCTCCAACACCATTCCCAAAACTTTGATCCGACAGGTCCACATCAACCAAGAAGGCTCCAAAGCACTAAGTGTTCAAATCAACTCTAAAGTACCTGCTACCCTCGTTCCCCTATTAGAGATGTACCAACCTTTCTGA
CircID chr1:43166826|43167223
ORF Type ORF2
Protein Length 34
Nucleotide Length 105
Protein Sequence MYFKNKSLNHHMRLLFATLILRVTSCSPTPFPKL
Nucleotide Sequence TTGTATTTTAAGAATAAAAGTTTAAACCACCATATGAGGCTGTTATTTGCTACACTGATTTTAAGAGTCACATCCTGCTCTCCAACACCATTCCCAAAACTTTGA
CircID chr1:43166826|43167223
ORF Type ORF3
Protein Length 30
Nucleotide Length 93
Protein Sequence MLAFGSCLLALCQRFLISLKEIQFIREACK
Nucleotide Sequence CTGCTGGCCTTTGGCTCCTGCCTTCTTGCGCTGTGCCAGAGGTTTCTGATCTCCCTCAAGGAAATCCAGTTTATCAGAGAAGCCTGTAAGTGA
CircID chr1:43166826|43167223
ORF Type ORF4
Protein Length 28
Nucleotide Length 87
Protein Sequence MMNAIKKYQKGWYISNRGTRVAGTLELI
Nucleotide Sequence ATGATGAATGCTATTAAGAAATATCAGAAAGGTTGGTACATCTCTAATAGGGGAACGAGGGTAGCAGGTACTTTAGAGTTGATTTGA
CircID chr1:43166826|43167223
ORF Type ORF5
Protein Length 42
Nucleotide Length 126
Protein Sequence MVLIKTTSSLTGFSDKLDFLEGDQKPLAQRKKAGAKGQQMRK
Nucleotide Sequence ATGGTGCTGATCAAAACTACTTCTTCACTTACAGGCTTCTCTGATAAACTGGATTTCCTTGAGGGAGATCAGAAACCTCTGGCACAGCGCAAGAAGGCAGGAGCCAAAGGCCAGCAGATGAGGAAG
CircID chr1:43166826|43167223
ORF Type ORF6
Protein Length 26
Nucleotide Length 81
Protein Sequence MINWISLREIRNLWHSARRQEPKASR
Nucleotide Sequence CTGATAAACTGGATTTCCTTGAGGGAGATCAGAAACCTCTGGCACAGCGCAAGAAGGCAGGAGCCAAAGGCCAGCAGATGA
CircID chr1:43166826|43167223
ORF Type ORF7
Protein Length 56
Nucleotide Length 171
Protein Sequence MVDVDLSDQSFGNGVGEQDVTLKISVANNSLIWWFKLLFLKYNGADQNYFFTYRLL
Nucleotide Sequence TTGGTTGATGTGGACCTGTCGGATCAAAGTTTTGGGAATGGTGTTGGAGAGCAGGATGTGACTCTTAAAATCAGTGTAGCAAATAACAGCCTCATATGGTGGTTTAAACTTTTATTCTTAAAATACAATGGTGCTGATCAAAACTACTTCTTCACTTACAGGCTTCTCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab