CircRNA Information

General Information
circRNA Basic Information
CircID chr1:43317331|43317610
Strand +
CircType exon
Host Gene ENSG00000066056.12;
Algorism CIRI2;
Sequence TTCCAGTTCTCCCGCAAAGTCACGATGGTCATTTTCAGAGGCATACTCTGTGTAAAGAATCCAATATTATTTTGCCAGAAATAACTCTGGAGAAAGGGCTGGCAAGGGCTGGGGTCAATTGCTGGAGGAAGCCAGGTGGGGCCTGGGATTTGTGGGACAAAGGAGAGCATCAGGGCTGGGCCAGGGGTCGCCCCAGTGGACCTTTCAGCATTTTGATGGCTGCGTTCATCTTCAGCCCGTCCTTCTTGATCATGGCCCGGATGACCTGGCCGAAGTTCCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:43317331|43317610 hsa-miR-146a-5p 0 0 1
chr1:43317331|43317610 hsa-miR-146a-3p 0 0 1
chr1:43317331|43317610 hsa-miR-488-5p 0 0 1
chr1:43317331|43317610 hsa-miR-488-3p 0 0 1
chr1:43317331|43317610 hsa-miR-591 0 0 1
chr1:43317331|43317610 hsa-miR-605-5p 0 0 1
chr1:43317331|43317610 hsa-miR-605-3p 0 0 1
chr1:43317331|43317610 hsa-miR-766-5p 0 0 1
chr1:43317331|43317610 hsa-miR-766-3p 0 0 1
chr1:43317331|43317610 hsa-miR-1202 0 0 1
chr1:43317331|43317610 hsa-miR-525-5p 0 0 1
chr1:43317331|43317610 hsa-miR-1224-3p 0 1 1
chr1:43317331|43317610 hsa-miR-532-5p 0 0 1
chr1:43317331|43317610 hsa-miR-331-3p 1 1 1
chr1:43317331|43317610 hsa-miR-188-3p 0 0 1
chr1:43317331|43317610 hsa-miR-338-3p 0 0 1
chr1:43317331|43317610 hsa-miR-520a-5p 0 0 1
chr1:43317331|43317610 hsa-miR-146b-5p 0 0 1
chr1:43317331|43317610 hsa-miR-515-5p 0 0 1
chr1:43317331|43317610 hsa-miR-516a-3p 0 0 1
chr1:43317331|43317610 hsa-miR-129-3p 0 0 1
chr1:43317331|43317610 hsa-miR-557 0 1 0
chr1:43317331|43317610 hsa-miR-631 1 0 0
chr1:43317331|43317610 hsa-miR-764 1 0 0
chr1:43317331|43317610 hsa-miR-1538 1 1 0
chr1:43317331|43317610 hsa-miR-3164 0 1 0
chr1:43317331|43317610 hsa-miR-4313 1 0 0
chr1:43317331|43317610 hsa-miR-4254 1 0 0
chr1:43317331|43317610 hsa-miR-4292 1 0 0
chr1:43317331|43317610 hsa-miR-3662 0 1 0
chr1:43317331|43317610 hsa-miR-3907 1 0 0
chr1:43317331|43317610 hsa-miR-4471 0 1 0
chr1:43317331|43317610 hsa-miR-3972 1 1 0
chr1:43317331|43317610 hsa-miR-4656 0 1 0
chr1:43317331|43317610 hsa-miR-7976 0 1 0
chr1:43317331|43317610 hsa-miR-26b-3p 1 0 0
chr1:43317331|43317610 hsa-miR-4747-3p 1 0 0
chr1:43317331|43317610 hsa-miR-3194-3p 1 0 0
chr1:43317331|43317610 hsa-miR-4726-3p 1 1 0
chr1:43317331|43317610 hsa-miR-6822-3p 0 1 0
chr1:43317331|43317610 hsa-miR-6720-5p 1 1 0
chr1:43317331|43317610 hsa-miR-1233-3p 1 0 0
chr1:43317331|43317610 hsa-miR-6730-5p 0 1 0
chr1:43317331|43317610 hsa-miR-3189-5p 1 0 0
chr1:43317331|43317610 hsa-miR-6849-3p 1 0 0
chr1:43317331|43317610 hsa-miR-6845-3p 1 0 0
chr1:43317331|43317610 hsa-miR-6796-3p 1 0 0
chr1:43317331|43317610 hsa-miR-877-3p 1 0 0
chr1:43317331|43317610 hsa-miR-6765-3p 1 1 0
chr1:43317331|43317610 hsa-miR-4713-5p 1 0 0
chr1:43317331|43317610 hsa-miR-6763-3p 1 0 0
chr1:43317331|43317610 hsa-miR-6749-5p 1 0 0
chr1:43317331|43317610 hsa-miR-6809-3p 1 0 0
chr1:43317331|43317610 hsa-miR-7156-3p 1 0 0
chr1:43317331|43317610 hsa-miR-339-5p 1 0 0
chr1:43317331|43317610 hsa-miR-4707-5p 1 0 0
chr1:43317331|43317610 hsa-miR-4687-5p 1 0 0
chr1:43317331|43317610 hsa-miR-6813-3p 1 0 0
chr1:43317331|43317610 hsa-miR-4758-3p 1 1 0
chr1:43317331|43317610 hsa-miR-1910-5p 1 1 0
chr1:43317331|43317610 hsa-miR-6752-3p 1 0 0
chr1:43317331|43317610 hsa-miR-6782-3p 1 0 0
chr1:43317331|43317610 hsa-miR-3940-3p 1 0 0
chr1:43317331|43317610 hsa-miR-6508-3p 0 1 0
chr1:43317331|43317610 hsa-miR-6856-3p 1 0 0
chr1:43317331|43317610 hsa-miR-5088-3p 1 0 0
chr1:43317331|43317610 hsa-miR-2277-5p 1 0 0
chr1:43317331|43317610 hsa-miR-493-3p 0 1 0
chr1:43317331|43317610 hsa-miR-204-5p 1 0 0
chr1:43317331|43317610 hsa-miR-3173-5p 1 0 0
chr1:43317331|43317610 hsa-miR-6779-3p 1 1 0
chr1:43317331|43317610 hsa-miR-4433b-5p 1 1 0
chr1:43317331|43317610 hsa-miR-6812-3p 1 0 0
chr1:43317331|43317610 hsa-miR-6780b-3p 0 1 0
chr1:43317331|43317610 hsa-miR-4797-5p 0 1 0
chr1:43317331|43317610 hsa-miR-6775-5p 1 0 0
chr1:43317331|43317610 hsa-miR-4745-3p 1 0 0
chr1:43317331|43317610 hsa-miR-6799-3p 1 0 0
chr1:43317331|43317610 hsa-miR-1199-5p 1 0 0
chr1:43317331|43317610 hsa-miR-6762-5p 1 0 0
chr1:43317331|43317610 hsa-miR-6893-3p 1 0 0
chr1:43317331|43317610 hsa-miR-193b-3p 1 0 0
chr1:43317331|43317610 hsa-miR-6792-3p 1 1 0
chr1:43317331|43317610 hsa-miR-6805-3p 1 0 0
chr1:43317331|43317610 hsa-miR-6810-3p 1 0 0
chr1:43317331|43317610 hsa-miR-3928-5p 1 0 0
chr1:43317331|43317610 hsa-miR-6775-3p 1 0 0
chr1:43317331|43317610 hsa-miR-10392-3p 1 1 0
chr1:43317331|43317610 hsa-miR-4691-5p 0 1 0
chr1:43317331|43317610 hsa-miR-4690-3p 1 0 0
chr1:43317331|43317610 hsa-miR-7156-5p 1 0 0
chr1:43317331|43317610 hsa-miR-3922-3p 0 1 0
chr1:43317331|43317610 hsa-miR-7-2-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr1:43317331|43317610
ORF Type ORF1
Protein Length 35
Nucleotide Length 108
Protein Sequence MGSIAGGSQVGPGICGTKESIRAGPGVAPVDLSAF
Nucleotide Sequence CTGGGGTCAATTGCTGGAGGAAGCCAGGTGGGGCCTGGGATTTGTGGGACAAAGGAGAGCATCAGGGCTGGGCCAGGGGTCGCCCCAGTGGACCTTTCAGCATTTTGA
CircID chr1:43317331|43317610
ORF Type ORF2
Protein Length 54
Nucleotide Length 162
Protein Sequence MLEEARWGLGFVGQRRASGLGQGSPQWTFQHFDGCVHLQPVLLDHGPDDLAEVP
Nucleotide Sequence TTGCTGGAGGAAGCCAGGTGGGGCCTGGGATTTGTGGGACAAAGGAGAGCATCAGGGCTGGGCCAGGGGTCGCCCCAGTGGACCTTTCAGCATTTTGATGGCTGCGTTCATCTTCAGCCCGTCCTTCTTGATCATGGCCCGGATGACCTGGCCGAAGTTCCC
CircID chr1:43317331|43317610
ORF Type ORF3
Protein Length 77
Nucleotide Length 231
Protein Sequence MCKESNIILPEITLEKGLARAGVNCWRKPGGAWDLWDKGEHQGWARGRPSGPFSILMAAFIFSPSFLIMARMTWPKF
Nucleotide Sequence CTGTGTAAAGAATCCAATATTATTTTGCCAGAAATAACTCTGGAGAAAGGGCTGGCAAGGGCTGGGGTCAATTGCTGGAGGAAGCCAGGTGGGGCCTGGGATTTGTGGGACAAAGGAGAGCATCAGGGCTGGGCCAGGGGTCGCCCCAGTGGACCTTTCAGCATTTTGATGGCTGCGTTCATCTTCAGCCCGTCCTTCTTGATCATGGCCCGGATGACCTGGCCGAAGTTC
CircID chr1:43317331|43317610
ORF Type ORF4
Protein Length 27
Nucleotide Length 84
Protein Sequence MIKKDGLKMNAAIKMLKGPLGRPLAQP
Nucleotide Sequence ATGATCAAGAAGGACGGGCTGAAGATGAACGCAGCCATCAAAATGCTGAAAGGTCCACTGGGGCGACCCCTGGCCCAGCCCTGA
CircID chr1:43317331|43317610
ORF Type ORF5
Protein Length 41
Nucleotide Length 126
Protein Sequence MSHKSQAPPGFLQQLTPALASPFSRVISGKIILDSLHRVCL
Nucleotide Sequence TTGTCCCACAAATCCCAGGCCCCACCTGGCTTCCTCCAGCAATTGACCCCAGCCCTTGCCAGCCCTTTCTCCAGAGTTATTTCTGGCAAAATAATATTGGATTCTTTACACAGAGTATGCCTCTGA
CircID chr1:43317331|43317610
ORF Type ORF6
Protein Length 57
Nucleotide Length 171
Protein Sequence MMLSFVPQIPGPTWLPPAIDPSPCQPFLQSYFWQNNIGFFTQSMPLKMTIVTLRENW
Nucleotide Sequence CTGATGCTCTCCTTTGTCCCACAAATCCCAGGCCCCACCTGGCTTCCTCCAGCAATTGACCCCAGCCCTTGCCAGCCCTTTCTCCAGAGTTATTTCTGGCAAAATAATATTGGATTCTTTACACAGAGTATGCCTCTGAAAATGACCATCGTGACTTTGCGGGAGAACTGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab