CircRNA Information

General Information
circRNA Basic Information
CircID chr1:43364971|43365308
Strand +
CircType exon
Host Gene ENSG00000066322.11;
Algorism CIRI2;
Sequence GTGTACTTCGTTCTCTCACTTGGGCCTCGCATCATGGCTAATCGGAAGCCCTTCCAGCTCCGTGGCTTCATGATTGTCTACAACTTCTCACTGGTGGCACTCTCCCTCTACATTGTCTATGAGGTGGGCCCCTGGGATGCCGGGCTTTAATTTCTGTCAGCAGGATAAGGAGCAGGCCATAGAGCCAGAGCATGGCATTTCTCCTTTCCAGAGAGGTTCAGATCCATGTCCTCAGCTAGCGAAGGGGAGGGATGGCTGGGAAGGGAGAACTCTGGTGGTCTAATCCACATCCCTTCCCAGTTCCTGATGTCGGGCTGGCTGAGCACCTATACCTGGCG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:43364971|43365308 hsa-miR-149-5p 0 0 1
chr1:43364971|43365308 hsa-miR-149-3p 0 0 1
chr1:43364971|43365308 hsa-miR-370-5p 0 0 1
chr1:43364971|43365308 hsa-miR-370-3p 0 0 1
chr1:43364971|43365308 hsa-miR-382-5p 0 0 1
chr1:43364971|43365308 hsa-miR-382-3p 0 0 1
chr1:43364971|43365308 hsa-miR-326 0 0 1
chr1:43364971|43365308 hsa-miR-376b-5p 0 0 1
chr1:43364971|43365308 hsa-miR-376b-3p 0 0 1
chr1:43364971|43365308 hsa-miR-539-5p 0 0 1
chr1:43364971|43365308 hsa-miR-539-3p 0 0 1
chr1:43364971|43365308 hsa-miR-873-5p 0 0 1
chr1:43364971|43365308 hsa-miR-873-3p 0 0 1
chr1:43364971|43365308 hsa-miR-760 0 1 1
chr1:43364971|43365308 hsa-miR-1227-5p 0 0 1
chr1:43364971|43365308 hsa-miR-1227-3p 0 0 1
chr1:43364971|43365308 hsa-miR-1299 0 0 1
chr1:43364971|43365308 hsa-miR-1253 0 0 1
chr1:43364971|43365308 hsa-miR-1322 0 0 1
chr1:43364971|43365308 hsa-miR-1224-5p 0 0 1
chr1:43364971|43365308 hsa-miR-324-5p 0 0 1
chr1:43364971|43365308 hsa-miR-1224-3p 0 0 1
chr1:43364971|43365308 hsa-miR-490-5p 0 0 1
chr1:43364971|43365308 hsa-miR-875-3p 0 0 1
chr1:43364971|43365308 hsa-miR-628-5p 0 0 1
chr1:43364971|43365308 hsa-miR-330-5p 0 0 1
chr1:43364971|43365308 hsa-miR-1300 0 0 1
chr1:43364971|43365308 hsa-miR-376a 0 0 1
chr1:43364971|43365308 hsa-miR-663a 1 0 0
chr1:43364971|43365308 hsa-miR-762 1 0 0
chr1:43364971|43365308 hsa-miR-764 1 0 0
chr1:43364971|43365308 hsa-miR-1260a 1 0 0
chr1:43364971|43365308 hsa-miR-1275 1 0 0
chr1:43364971|43365308 hsa-miR-3138 1 1 0
chr1:43364971|43365308 hsa-miR-3175 1 0 0
chr1:43364971|43365308 hsa-miR-3907 1 1 0
chr1:43364971|43365308 hsa-miR-4448 1 0 0
chr1:43364971|43365308 hsa-miR-4479 1 0 0
chr1:43364971|43365308 hsa-miR-4487 0 1 0
chr1:43364971|43365308 hsa-miR-4491 0 1 0
chr1:43364971|43365308 hsa-miR-4526 1 0 0
chr1:43364971|43365308 hsa-miR-4656 1 0 0
chr1:43364971|43365308 hsa-miR-4739 1 0 0
chr1:43364971|43365308 hsa-miR-5192 0 1 0
chr1:43364971|43365308 hsa-miR-5680 0 1 0
chr1:43364971|43365308 hsa-miR-5691 0 1 0
chr1:43364971|43365308 hsa-miR-5698 1 0 0
chr1:43364971|43365308 hsa-miR-6127 1 0 0
chr1:43364971|43365308 hsa-miR-7702 1 1 0
chr1:43364971|43365308 hsa-miR-7977 0 1 0
chr1:43364971|43365308 hsa-miR-8060 1 1 0
chr1:43364971|43365308 hsa-miR-8085 1 1 0
chr1:43364971|43365308 hsa-miR-8089 1 1 0
chr1:43364971|43365308 hsa-miR-211-3p 0 1 0
chr1:43364971|43365308 hsa-miR-3157-5p 0 1 0
chr1:43364971|43365308 hsa-miR-6822-3p 0 1 0
chr1:43364971|43365308 hsa-miR-6804-5p 0 1 0
chr1:43364971|43365308 hsa-miR-6089 1 0 0
chr1:43364971|43365308 hsa-miR-6757-5p 0 1 0
chr1:43364971|43365308 hsa-miR-7160-5p 0 1 0
chr1:43364971|43365308 hsa-miR-6875-3p 0 1 0
chr1:43364971|43365308 hsa-miR-197-5p 1 0 0
chr1:43364971|43365308 hsa-miR-6783-5p 0 1 0
chr1:43364971|43365308 hsa-miR-3126-5p 1 0 0
chr1:43364971|43365308 hsa-miR-6760-5p 1 0 0
chr1:43364971|43365308 hsa-miR-6874-5p 1 0 0
chr1:43364971|43365308 hsa-miR-3194-5p 0 1 0
chr1:43364971|43365308 hsa-miR-6810-5p 0 1 0
chr1:43364971|43365308 hsa-miR-5008-5p 1 0 0
chr1:43364971|43365308 hsa-miR-6858-3p 0 1 0
chr1:43364971|43365308 hsa-miR-1343-3p 1 0 0
chr1:43364971|43365308 hsa-miR-615-5p 1 0 0
chr1:43364971|43365308 hsa-miR-6772-3p 0 1 0
chr1:43364971|43365308 hsa-miR-1226-5p 1 1 0
chr1:43364971|43365308 hsa-miR-204-3p 0 1 0
chr1:43364971|43365308 hsa-miR-4691-3p 1 1 0
chr1:43364971|43365308 hsa-miR-4764-5p 0 1 0
chr1:43364971|43365308 hsa-miR-3202 0 1 0
chr1:43364971|43365308 hsa-miR-3616-3p 1 0 0
chr1:43364971|43365308 hsa-miR-6776-3p 1 1 0
chr1:43364971|43365308 hsa-miR-6878-5p 1 0 0
chr1:43364971|43365308 hsa-miR-339-5p 1 0 0
chr1:43364971|43365308 hsa-miR-664b-5p 1 0 0
chr1:43364971|43365308 hsa-miR-211-5p 0 1 0
chr1:43364971|43365308 hsa-miR-1236-3p 0 1 0
chr1:43364971|43365308 hsa-miR-3158-3p 0 1 0
chr1:43364971|43365308 hsa-miR-6867-3p 0 1 0
chr1:43364971|43365308 hsa-miR-3940-3p 1 1 0
chr1:43364971|43365308 hsa-miR-6868-5p 0 1 0
chr1:43364971|43365308 hsa-miR-518c-5p 0 1 0
chr1:43364971|43365308 hsa-miR-6734-3p 0 1 0
chr1:43364971|43365308 hsa-miR-4802-3p 0 1 0
chr1:43364971|43365308 hsa-miR-1233-5p 1 0 0
chr1:43364971|43365308 hsa-miR-1343-5p 1 0 0
chr1:43364971|43365308 hsa-miR-6743-5p 1 0 0
chr1:43364971|43365308 hsa-miR-6752-5p 1 0 0
chr1:43364971|43365308 hsa-miR-6813-5p 1 0 0
chr1:43364971|43365308 hsa-miR-6763-5p 1 0 0
chr1:43364971|43365308 hsa-miR-6779-5p 0 1 0
chr1:43364971|43365308 hsa-miR-6797-5p 1 1 0
chr1:43364971|43365308 hsa-miR-7111-5p 1 0 0
chr1:43364971|43365308 hsa-miR-3127-3p 0 1 0
chr1:43364971|43365308 hsa-miR-4685-3p 0 1 0
chr1:43364971|43365308 hsa-miR-3620-5p 1 0 0
chr1:43364971|43365308 hsa-miR-5196-5p 0 1 0
chr1:43364971|43365308 hsa-miR-10396a-5p 1 0 0
chr1:43364971|43365308 hsa-miR-10396b-5p 1 0 0
chr1:43364971|43365308 hsa-miR-1909-3p 1 0 0
chr1:43364971|43365308 hsa-miR-6848-5p 1 0 0
chr1:43364971|43365308 hsa-miR-6858-5p 1 0 0
chr1:43364971|43365308 hsa-miR-6883-5p 1 1 0
chr1:43364971|43365308 hsa-miR-6889-5p 1 0 0
chr1:43364971|43365308 hsa-miR-4723-5p 1 0 0
chr1:43364971|43365308 hsa-miR-6831-5p 1 0 0
chr1:43364971|43365308 hsa-miR-10394-3p 1 0 0
chr1:43364971|43365308 hsa-miR-6511a-5p 1 0 0
chr1:43364971|43365308 hsa-miR-6511b-5p 1 0 0
chr1:43364971|43365308 hsa-miR-3085-5p 1 0 0
chr1:43364971|43365308 hsa-miR-3679-5p 1 0 0
chr1:43364971|43365308 hsa-miR-4646-5p 1 1 0
chr1:43364971|43365308 hsa-miR-6785-5p 1 0 0
chr1:43364971|43365308 hsa-miR-6756-3p 0 1 0
chr1:43364971|43365308 hsa-miR-4723-3p 0 1 0
chr1:43364971|43365308 hsa-miR-3085-3p 1 0 0
chr1:43364971|43365308 hsa-miR-6764-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr1:43364971|43365308
ORF Type ORF1
Protein Length 38
Nucleotide Length 117
Protein Sequence MANRKPFQLRGFMIVYNFSLVALSLYIVYEVGPWDAGL
Nucleotide Sequence ATGGCTAATCGGAAGCCCTTCCAGCTCCGTGGCTTCATGATTGTCTACAACTTCTCACTGGTGGCACTCTCCCTCTACATTGTCTATGAGGTGGGCCCCTGGGATGCCGGGCTTTAA
CircID chr1:43364971|43365308
ORF Type ORF2
Protein Length 37
Nucleotide Length 111
Protein Sequence MSSASEGEGWLGRENSGGLIHIPSQFLMSGWLSTYTW
Nucleotide Sequence ATGTCCTCAGCTAGCGAAGGGGAGGGATGGCTGGGAAGGGAGAACTCTGGTGGTCTAATCCACATCCCTTCCCAGTTCCTGATGTCGGGCTGGCTGAGCACCTATACCTGG
CircID chr1:43364971|43365308
ORF Type ORF3
Protein Length 69
Nucleotide Length 210
Protein Sequence MSTTSHWWHSPSTLSMRWAPGMPGFNFCQQDKEQAIEPEHGISPFQRGSDPCPQLAKGRDGWEGRTLVV
Nucleotide Sequence TTGTCTACAACTTCTCACTGGTGGCACTCTCCCTCTACATTGTCTATGAGGTGGGCCCCTGGGATGCCGGGCTTTAATTTCTGTCAGCAGGATAAGGAGCAGGCCATAGAGCCAGAGCATGGCATTTCTCCTTTCCAGAGAGGTTCAGATCCATGTCCTCAGCTAGCGAAGGGGAGGGATGGCTGGGAAGGGAGAACTCTGGTGGTCTAA
CircID chr1:43364971|43365308
ORF Type ORF4
Protein Length 29
Nucleotide Length 87
Protein Sequence MAGKGELWWSNPHPFPVPDVGLAEHLYLA
Nucleotide Sequence ATGGCTGGGAAGGGAGAACTCTGGTGGTCTAATCCACATCCCTTCCCAGTTCCTGATGTCGGGCTGGCTGAGCACCTATACCTGGCG
CircID chr1:43364971|43365308
ORF Type ORF5
Protein Length 47
Nucleotide Length 144
Protein Sequence MWIRPPEFSLPSHPSPSLAEDMDLNLSGKEKCHALALWPAPYPADRN
Nucleotide Sequence ATGTGGATTAGACCACCAGAGTTCTCCCTTCCCAGCCATCCCTCCCCTTCGCTAGCTGAGGACATGGATCTGAACCTCTCTGGAAAGGAGAAATGCCATGCTCTGGCTCTATGGCCTGCTCCTTATCCTGCTGACAGAAATTAA
CircID chr1:43364971|43365308
ORF Type ORF6
Protein Length 47
Nucleotide Length 144
Protein Sequence MERRNAMLWLYGLLLILLTEIKARHPRGPPHRQCRGRVPPVRSCRQS
Nucleotide Sequence CTGGAAAGGAGAAATGCCATGCTCTGGCTCTATGGCCTGCTCCTTATCCTGCTGACAGAAATTAAAGCCCGGCATCCCAGGGGCCCACCTCATAGACAATGTAGAGGGAGAGTGCCACCAGTGAGAAGTTGTAGACAATCATGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab