CircRNA Information

General Information
circRNA Basic Information
CircID chr1:43437492|43437902
Strand +
CircType exon
Host Gene ENSG00000198198.12;
Algorism CIRI2;
Sequence CTGCCTGCCCAACACCATGGACCAGCAGCTGGATATGTCTGTCCACTTGGCCCACAGGACGAGCAGCATCTGAACTGCGGCTAGAGACCATGTCTAAGGGAGAACGAGGACCCTACAGGGAAAACTGTGGTCAGGGCCCCGGTTCCAGAGAGCAAAGTGCAAGAGGAACACAGGGGCATCAGAGAGTGGGAGTGATACATGCCGAGGCTTCCTCAGAGTAGATGGGCTCTTGGCTTCGGGACAGAGCGAGGGAAGGGGGCAGCGCATCCCCTTTCCATGGCCGGTCACTGCAGGATGTCTCTAGGAGCCGAAGATAGTACACAGC
circRNA Expression in different cancers

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circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:43437492|43437902 hsa-miR-326 0 0 1
chr1:43437492|43437902 hsa-miR-335-5p 0 0 1
chr1:43437492|43437902 hsa-miR-335-3p 0 0 1
chr1:43437492|43437902 hsa-miR-1182 0 0 1
chr1:43437492|43437902 hsa-miR-1291 0 1 1
chr1:43437492|43437902 hsa-miR-1299 0 0 1
chr1:43437492|43437902 hsa-miR-1251-5p 0 0 1
chr1:43437492|43437902 hsa-miR-1251-3p 0 0 1
chr1:43437492|43437902 hsa-miR-671-5p 0 0 1
chr1:43437492|43437902 hsa-miR-532-3p 0 0 1
chr1:43437492|43437902 hsa-miR-339-5p 1 0 1
chr1:43437492|43437902 hsa-miR-875-3p 0 0 1
chr1:43437492|43437902 hsa-miR-140-3p 0 0 1
chr1:43437492|43437902 hsa-miR-34c-3p 0 0 1
chr1:43437492|43437902 hsa-miR-324-3p 0 0 1
chr1:43437492|43437902 hsa-miR-483-3p 0 0 1
chr1:43437492|43437902 hsa-miR-330-5p 0 0 1
chr1:43437492|43437902 hsa-miR-1274a 0 0 1
chr1:43437492|43437902 hsa-miR-642 0 0 1
chr1:43437492|43437902 hsa-miR-1274b 0 0 1
chr1:43437492|43437902 hsa-miR-138 0 0 1
chr1:43437492|43437902 hsa-miR-764 0 1 0
chr1:43437492|43437902 hsa-miR-1203 1 0 0
chr1:43437492|43437902 hsa-miR-1260a 1 0 0
chr1:43437492|43437902 hsa-miR-1913 0 1 0
chr1:43437492|43437902 hsa-miR-3138 0 1 0
chr1:43437492|43437902 hsa-miR-3147 0 1 0
chr1:43437492|43437902 hsa-miR-4322 0 1 0
chr1:43437492|43437902 hsa-miR-4265 1 0 0
chr1:43437492|43437902 hsa-miR-4328 0 1 0
chr1:43437492|43437902 hsa-miR-4449 1 0 0
chr1:43437492|43437902 hsa-miR-4480 0 1 0
chr1:43437492|43437902 hsa-miR-5190 0 1 0
chr1:43437492|43437902 hsa-miR-5681a 0 1 0
chr1:43437492|43437902 hsa-miR-134-3p 0 1 0
chr1:43437492|43437902 hsa-miR-17-3p 0 1 0
chr1:43437492|43437902 hsa-miR-3692-5p 0 1 0
chr1:43437492|43437902 hsa-miR-6817-3p 0 1 0
chr1:43437492|43437902 hsa-miR-1915-5p 1 0 0
chr1:43437492|43437902 hsa-miR-6882-3p 1 1 0
chr1:43437492|43437902 hsa-miR-4713-5p 1 0 0
chr1:43437492|43437902 hsa-miR-4793-5p 0 1 0
chr1:43437492|43437902 hsa-miR-4786-3p 0 1 0
chr1:43437492|43437902 hsa-miR-6784-5p 0 1 0
chr1:43437492|43437902 hsa-miR-4640-5p 1 0 0
chr1:43437492|43437902 hsa-miR-6803-3p 0 1 0
chr1:43437492|43437902 hsa-miR-3191-5p 0 1 0
chr1:43437492|43437902 hsa-miR-146b-3p 0 1 0
chr1:43437492|43437902 hsa-miR-6877-5p 1 0 0
chr1:43437492|43437902 hsa-miR-5000-5p 0 1 0
chr1:43437492|43437902 hsa-miR-1307-3p 1 0 0
chr1:43437492|43437902 hsa-miR-6777-3p 1 1 0
chr1:43437492|43437902 hsa-miR-1255b-2-3p 1 0 0
chr1:43437492|43437902 hsa-miR-3184-3p 1 0 0
chr1:43437492|43437902 hsa-miR-1287-3p 0 1 0
chr1:43437492|43437902 hsa-miR-6734-3p 1 1 0
chr1:43437492|43437902 hsa-miR-4787-3p 0 1 0
chr1:43437492|43437902 hsa-miR-3156-3p 0 1 0
chr1:43437492|43437902 hsa-miR-5586-5p 0 1 0
chr1:43437492|43437902 hsa-miR-4685-3p 0 1 0
chr1:43437492|43437902 hsa-miR-6780b-5p 0 1 0
chr1:43437492|43437902 hsa-miR-10526-3p 0 1 0
chr1:43437492|43437902 hsa-miR-10398-3p 1 0 0
chr1:43437492|43437902 hsa-miR-6756-3p 0 1 0
chr1:43437492|43437902 hsa-miR-6805-3p 1 0 0
chr1:43437492|43437902 hsa-miR-6775-3p 0 1 0
chr1:43437492|43437902 hsa-miR-10394-5p 1 0 0
chr1:43437492|43437902 hsa-miR-6848-3p 0 1 0
chr1:43437492|43437902 hsa-miR-4653-5p 0 1 0
chr1:43437492|43437902 hsa-miR-4662a-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr1:43437492|43437902
ORF Type ORF1
Protein Length 27
Nucleotide Length 84
Protein Sequence LPAQHHGPAAGYVCPLGPQDEQHLNCG
Nucleotide Sequence CTGCCTGCCCAACACCATGGACCAGCAGCTGGATATGTCTGTCCACTTGGCCCACAGGACGAGCAGCATCTGAACTGCGGCTAG
CircID chr1:43437492|43437902
ORF Type ORF2
Protein Length 42
Nucleotide Length 126
Protein Sequence MPRLPQSRWALGFGTERGKGAAHPLSMAGHCRMSLGAEDSTQ
Nucleotide Sequence ATGCCGAGGCTTCCTCAGAGTAGATGGGCTCTTGGCTTCGGGACAGAGCGAGGGAAGGGGGCAGCGCATCCCCTTTCCATGGCCGGTCACTGCAGGATGTCTCTAGGAGCCGAAGATAGTACACAG
CircID chr1:43437492|43437902
ORF Type ORF3
Protein Length 59
Nucleotide Length 180
Protein Sequence MWSGPRFQRAKCKRNTGASESGSDTCRGFLRVDGLLASGQSEGRGQRIPFPWPVTAGCL
Nucleotide Sequence CTGTGGTCAGGGCCCCGGTTCCAGAGAGCAAAGTGCAAGAGGAACACAGGGGCATCAGAGAGTGGGAGTGATACATGCCGAGGCTTCCTCAGAGTAGATGGGCTCTTGGCTTCGGGACAGAGCGAGGGAAGGGGGCAGCGCATCCCCTTTCCATGGCCGGTCACTGCAGGATGTCTCTAG
CircID chr1:43437492|43437902
ORF Type ORF4
Protein Length 60
Nucleotide Length 183
Protein Sequence MSTWPTGRAASELRLETMSKGERGPYRENCGQGPGSREQSARGTQGHQRVGVIHAEASSE
Nucleotide Sequence CTGTCCACTTGGCCCACAGGACGAGCAGCATCTGAACTGCGGCTAGAGACCATGTCTAAGGGAGAACGAGGACCCTACAGGGAAAACTGTGGTCAGGGCCCCGGTTCCAGAGAGCAAAGTGCAAGAGGAACACAGGGGCATCAGAGAGTGGGAGTGATACATGCCGAGGCTTCCTCAGAGTAG
CircID chr1:43437492|43437902
ORF Type ORF5
Protein Length 31
Nucleotide Length 96
Protein Sequence MGSWLRDRAREGGSASPFHGRSLQDVSRSRR
Nucleotide Sequence ATGGGCTCTTGGCTTCGGGACAGAGCGAGGGAAGGGGGCAGCGCATCCCCTTTCCATGGCCGGTCACTGCAGGATGTCTCTAGGAGCCGAAGATAG
CircID chr1:43437492|43437902
ORF Type ORF6
Protein Length 27
Nucleotide Length 84
Protein Sequence MPPSLALSRSQEPIYSEEASACITPTL
Nucleotide Sequence CTGCCCCCTTCCCTCGCTCTGTCCCGAAGCCAAGAGCCCATCTACTCTGAGGAAGCCTCGGCATGTATCACTCCCACTCTCTGA
CircID chr1:43437492|43437902
ORF Type ORF7
Protein Length 30
Nucleotide Length 90
Protein Sequence MVSSRSSDAARPVGQVDRHIQLLVHGVGQA
Nucleotide Sequence ATGGTCTCTAGCCGCAGTTCAGATGCTGCTCGTCCTGTGGGCCAAGTGGACAGACATATCCAGCTGCTGGTCCATGGTGTTGGGCAGGCA
CircID chr1:43437492|43437902
ORF Type ORF8
Protein Length 57
Nucleotide Length 174
Protein Sequence MRCPLPSLCPEAKSPSTLRKPRHVSLPLSDAPVFLLHFALWNRGPDHSFPCRVLVLP
Nucleotide Sequence ATGCGCTGCCCCCTTCCCTCGCTCTGTCCCGAAGCCAAGAGCCCATCTACTCTGAGGAAGCCTCGGCATGTATCACTCCCACTCTCTGATGCCCCTGTGTTCCTCTTGCACTTTGCTCTCTGGAACCGGGGCCCTGACCACAGTTTTCCCTGTAGGGTCCTCGTTCTCCCTTAG
CircID chr1:43437492|43437902
ORF Type ORF9
Protein Length 39
Nucleotide Length 120
Protein Sequence MYHSHSLMPLCSSCTLLSGTGALTTVFPVGSSFSLRHGL
Nucleotide Sequence ATGTATCACTCCCACTCTCTGATGCCCCTGTGTTCCTCTTGCACTTTGCTCTCTGGAACCGGGGCCCTGACCACAGTTTTCCCTGTAGGGTCCTCGTTCTCCCTTAGACATGGTCTCTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab