CircRNA Information

General Information
circRNA Basic Information
CircID chr1:43450591|43450737
Strand -
CircType exon
Host Gene ENSG00000198198.12;
Algorism CIRI2;
Sequence ACTGAGTGACACCAAAGGCTTTGTAACTATGTCTTGAGGGTCTGCTGCCCCAGCCTGGCAGCAGGAACCGCCCTCCCCAAACACCCACAGCCACTGACCCATCCAGGACTCCAGAGAGTCAGGTCAACCCCGAGGACCCCTTGGGCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:43450591|43450737 hsa-miR-192-5p 0 0 1
chr1:43450591|43450737 hsa-miR-192-3p 0 0 1
chr1:43450591|43450737 hsa-miR-215-5p 0 0 1
chr1:43450591|43450737 hsa-miR-215-3p 0 0 1
chr1:43450591|43450737 hsa-miR-370-5p 0 0 1
chr1:43450591|43450737 hsa-miR-370-3p 0 0 1
chr1:43450591|43450737 hsa-miR-326 0 0 1
chr1:43450591|43450737 hsa-miR-345-5p 0 0 1
chr1:43450591|43450737 hsa-miR-345-3p 0 0 1
chr1:43450591|43450737 hsa-miR-563 0 0 1
chr1:43450591|43450737 hsa-miR-597-5p 0 0 1
chr1:43450591|43450737 hsa-miR-597-3p 0 0 1
chr1:43450591|43450737 hsa-miR-609 0 0 1
chr1:43450591|43450737 hsa-miR-631 0 0 1
chr1:43450591|43450737 hsa-miR-641 0 0 1
chr1:43450591|43450737 hsa-miR-668-5p 0 0 1
chr1:43450591|43450737 hsa-miR-668-3p 0 0 1
chr1:43450591|43450737 hsa-miR-922 0 0 1
chr1:43450591|43450737 hsa-miR-939-5p 0 0 1
chr1:43450591|43450737 hsa-miR-939-3p 0 0 1
chr1:43450591|43450737 hsa-miR-486-3p 0 0 1
chr1:43450591|43450737 hsa-miR-615-5p 0 0 1
chr1:43450591|43450737 hsa-miR-1289 0 0 1
chr1:43450591|43450737 hsa-miR-524-5p 0 0 1
chr1:43450591|43450737 hsa-miR-330-5p 0 0 1
chr1:43450591|43450737 hsa-miR-520d-5p 0 0 1
chr1:43450591|43450737 hsa-miR-9 0 0 1
chr1:43450591|43450737 hsa-miR-516b 0 0 1
chr1:43450591|43450737 hsa-miR-760 1 0 0
chr1:43450591|43450737 hsa-miR-2392 1 0 0
chr1:43450591|43450737 hsa-miR-4651 1 0 0
chr1:43450591|43450737 hsa-miR-5787 1 0 0
chr1:43450591|43450737 hsa-miR-7704 1 0 0
chr1:43450591|43450737 hsa-miR-4687-3p 1 0 0
chr1:43450591|43450737 hsa-miR-7114-5p 1 0 0
chr1:43450591|43450737 hsa-miR-6089 1 0 0
chr1:43450591|43450737 hsa-miR-6748-5p 1 0 0
chr1:43450591|43450737 hsa-miR-6772-5p 1 0 0
chr1:43450591|43450737 hsa-miR-6793-5p 1 0 0
chr1:43450591|43450737 hsa-miR-6796-5p 1 0 0
chr1:43450591|43450737 hsa-miR-1229-5p 1 0 0
chr1:43450591|43450737 hsa-miR-6771-5p 1 0 0
chr1:43450591|43450737 hsa-miR-6769b-5p 1 0 0
chr1:43450591|43450737 hsa-miR-6752-5p 1 0 0
chr1:43450591|43450737 hsa-miR-6756-5p 1 0 0
chr1:43450591|43450737 hsa-miR-6803-5p 1 0 0
chr1:43450591|43450737 hsa-miR-7110-5p 1 0 0
chr1:43450591|43450737 hsa-miR-6883-5p 1 0 0
chr1:43450591|43450737 hsa-miR-3198 1 0 0
chr1:43450591|43450737 hsa-miR-6736-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr1:43450591|43450737
ORF Type ORF1
Protein Length 38
Nucleotide Length 114
Protein Sequence MRVCCPSLAAGTALPKHPQPLTHPGLQRVRSTPRTPWA
Nucleotide Sequence TTGAGGGTCTGCTGCCCCAGCCTGGCAGCAGGAACCGCCCTCCCCAAACACCCACAGCCACTGACCCATCCAGGACTCCAGAGAGTCAGGTCAACCCCGAGGACCCCTTGGGCC
CircID chr1:43450591|43450737
ORF Type ORF2
Protein Length 35
Nucleotide Length 105
Protein Sequence MLPQPGSRNRPPQTPTATDPSRTPESQVNPEDPLG
Nucleotide Sequence CTGCTGCCCCAGCCTGGCAGCAGGAACCGCCCTCCCCAAACACCCACAGCCACTGACCCATCCAGGACTCCAGAGAGTCAGGTCAACCCCGAGGACCCCTTGGGC
CircID chr1:43450591|43450737
ORF Type ORF3
Protein Length 38
Nucleotide Length 114
Protein Sequence MESWMGQWLWVFGEGGSCCQAGAADPQDIVTKPLVSLS
Nucleotide Sequence CTGGAGTCCTGGATGGGTCAGTGGCTGTGGGTGTTTGGGGAGGGCGGTTCCTGCTGCCAGGCTGGGGCAGCAGACCCTCAAGACATAGTTACAAAGCCTTTGGTGTCACTCAGT
CircID chr1:43450591|43450737
ORF Type ORF4
Protein Length 31
Nucleotide Length 96
Protein Sequence MTLWSPGWVSGCGCLGRAVPAARLGQQTLKT
Nucleotide Sequence CTGACTCTCTGGAGTCCTGGATGGGTCAGTGGCTGTGGGTGTTTGGGGAGGGCGGTTCCTGCTGCCAGGCTGGGGCAGCAGACCCTCAAGACATAG
CircID chr1:43450591|43450737
ORF Type ORF5
Protein Length 35
Nucleotide Length 105
Protein Sequence MDGSVAVGVWGGRFLLPGWGSRPSRHSYKAFGVTQ
Nucleotide Sequence CTGGATGGGTCAGTGGCTGTGGGTGTTTGGGGAGGGCGGTTCCTGCTGCCAGGCTGGGGCAGCAGACCCTCAAGACATAGTTACAAAGCCTTTGGTGTCACTCAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab