CircRNA Information

General Information
circRNA Basic Information
CircID chr1:43605389|43605588
Strand +
CircType exon
Host Gene ENSG00000142949.15;
Algorism CIRI2;
Sequence CTTGGCGTCAGCATGCTCCCGCCCACACGGTCAATGGGCACCACAACAATGTAGAACCACCTGGGTGGGCAGGGCAGGAATCAGGACTGTCACTGCTGGTTACCTCCAGCCCTGCCCCGCCTCCCCCGATACCTCGTGTGCACACCTGACAAGCGAGGGGTCTTGCACATGGGGCATGGAGAGATCGAAGCGGCCGTCCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:43605389|43605588 hsa-miR-19a-5p 0 0 1
chr1:43605389|43605588 hsa-miR-19a-3p 0 0 1
chr1:43605389|43605588 hsa-miR-136-5p 0 0 1
chr1:43605389|43605588 hsa-miR-136-3p 0 0 1
chr1:43605389|43605588 hsa-miR-202-5p 0 0 1
chr1:43605389|43605588 hsa-miR-202-3p 0 0 1
chr1:43605389|43605588 hsa-miR-634 0 0 1
chr1:43605389|43605588 hsa-miR-874-5p 0 0 1
chr1:43605389|43605588 hsa-miR-874-3p 0 0 1
chr1:43605389|43605588 hsa-miR-744-5p 0 0 1
chr1:43605389|43605588 hsa-miR-744-3p 0 0 1
chr1:43605389|43605588 hsa-miR-125a-3p 0 0 1
chr1:43605389|43605588 hsa-miR-486-3p 0 0 1
chr1:43605389|43605588 hsa-miR-146b-3p 0 0 1
chr1:43605389|43605588 hsa-miR-876-3p 0 0 1
chr1:43605389|43605588 hsa-miR-628-5p 0 0 1
chr1:43605389|43605588 hsa-miR-1207-5p 0 0 1
chr1:43605389|43605588 hsa-miR-542-3p 0 0 1
chr1:43605389|43605588 hsa-miR-19b 0 0 1
chr1:43605389|43605588 hsa-miR-663 0 0 1
chr1:43605389|43605588 hsa-miR-663a -13 1 0
chr1:43605389|43605588 hsa-miR-3652 -7 1 0
chr1:43605389|43605588 hsa-miR-4430 -6 1 0
chr1:43605389|43605588 hsa-miR-3135b -9 1 0
chr1:43605389|43605588 hsa-miR-4530 -7 1 0
chr1:43605389|43605588 hsa-miR-5090 -8 1 0
chr1:43605389|43605588 hsa-miR-5190 1 1 0
chr1:43605389|43605588 hsa-miR-6132 -7 1 0
chr1:43605389|43605588 hsa-miR-4665-3p 1 0 0
chr1:43605389|43605588 hsa-miR-4726-3p 1 0 0
chr1:43605389|43605588 hsa-miR-6765-5p 1 0 0
chr1:43605389|43605588 hsa-miR-6825-5p -11 1 0
chr1:43605389|43605588 hsa-miR-6799-5p 1 0 0
chr1:43605389|43605588 hsa-miR-3934-5p -7 1 0
chr1:43605389|43605588 hsa-miR-6727-5p -13 1 0
chr1:43605389|43605588 hsa-miR-6721-5p -1 1 0
chr1:43605389|43605588 hsa-miR-3189-5p -7 1 0
chr1:43605389|43605588 hsa-miR-6796-5p 1 0 0
chr1:43605389|43605588 hsa-miR-6858-3p 1 0 0
chr1:43605389|43605588 hsa-miR-4763-5p -5 1 0
chr1:43605389|43605588 hsa-miR-1908-3p 1 0 0
chr1:43605389|43605588 hsa-miR-6803-3p 1 1 0
chr1:43605389|43605588 hsa-miR-1908-5p -9 1 0
chr1:43605389|43605588 hsa-miR-1228-5p 1 0 0
chr1:43605389|43605588 hsa-miR-4787-5p 1 0 0
chr1:43605389|43605588 hsa-miR-4446-3p -6 1 0
chr1:43605389|43605588 hsa-miR-6824-5p 1 0 0
chr1:43605389|43605588 hsa-miR-339-5p -3 1 0
chr1:43605389|43605588 hsa-miR-516b-5p -9 1 0
chr1:43605389|43605588 hsa-miR-1910-5p -10 1 0
chr1:43605389|43605588 hsa-miR-6752-3p 0 1 0
chr1:43605389|43605588 hsa-miR-6872-3p -1 1 0
chr1:43605389|43605588 hsa-miR-6795-3p 0 1 0
chr1:43605389|43605588 hsa-miR-7152-5p -2 1 0
chr1:43605389|43605588 hsa-miR-3173-5p 1 1 0
chr1:43605389|43605588 hsa-miR-6838-3p 2 1 0
chr1:43605389|43605588 hsa-miR-5581-3p 1 1 0
chr1:43605389|43605588 hsa-miR-4763-3p -12 1 0
chr1:43605389|43605588 hsa-miR-6787-5p 1 0 0
chr1:43605389|43605588 hsa-miR-6816-5p -14 1 0
chr1:43605389|43605588 hsa-miR-6870-5p -9 1 0
chr1:43605389|43605588 hsa-miR-6775-5p 1 0 0
chr1:43605389|43605588 hsa-miR-5001-5p -9 1 0
chr1:43605389|43605588 hsa-miR-6756-5p 1 0 0
chr1:43605389|43605588 hsa-miR-6803-5p 1 0 0
chr1:43605389|43605588 hsa-miR-10401-5p -10 1 0
chr1:43605389|43605588 hsa-miR-7111-5p -10 1 0
chr1:43605389|43605588 hsa-miR-3620-5p 1 0 0
chr1:43605389|43605588 hsa-miR-328-5p 1 0 0
chr1:43605389|43605588 hsa-miR-3085-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr1:43605389|43605588
ORF Type ORF1
Protein Length 46
Nucleotide Length 138
Protein Sequence MGGQGRNQDCHCWLPPALPRLPRYLVCTPDKRGVLHMGHGEIEAAV
Nucleotide Sequence CTGGGTGGGCAGGGCAGGAATCAGGACTGTCACTGCTGGTTACCTCCAGCCCTGCCCCGCCTCCCCCGATACCTCGTGTGCACACCTGACAAGCGAGGGGTCTTGCACATGGGGCATGGAGAGATCGAAGCGGCCGTC
CircID chr1:43605389|43605588
ORF Type ORF2
Protein Length 66
Nucleotide Length 198
Protein Sequence LASACSRPHGQWAPQQCRTTWVGRAGIRTVTAGYLQPCPASPDTSCAHLTSEGSCTWGMERSKRPS
Nucleotide Sequence TTGGCGTCAGCATGCTCCCGCCCACACGGTCAATGGGCACCACAACAATGTAGAACCACCTGGGTGGGCAGGGCAGGAATCAGGACTGTCACTGCTGGTTACCTCCAGCCCTGCCCCGCCTCCCCCGATACCTCGTGTGCACACCTGACAAGCGAGGGGTCTTGCACATGGGGCATGGAGAGATCGAAGCGGCCGTCC
CircID chr1:43605389|43605588
ORF Type ORF3
Protein Length 26
Nucleotide Length 81
Protein Sequence MCKTPRLSGVHTRYRGRRGRAGGNQQ
Nucleotide Sequence ATGTGCAAGACCCCTCGCTTGTCAGGTGTGCACACGAGGTATCGGGGGAGGCGGGGCAGGGCTGGAGGTAACCAGCAGTGA
CircID chr1:43605389|43605588
ORF Type ORF4
Protein Length 25
Nucleotide Length 75
Protein Sequence MPCPPRWFYIVVVPIDRVGGSMLTP
Nucleotide Sequence CTGCCCTGCCCACCCAGGTGGTTCTACATTGTTGTGGTGCCCATTGACCGTGTGGGCGGGAGCATGCTGACGCCA
CircID chr1:43605389|43605588
ORF Type ORF5
Protein Length 33
Nucleotide Length 102
Protein Sequence MEVTSSDSPDSCPAHPGGSTLLWCPLTVWAGAC
Nucleotide Sequence CTGGAGGTAACCAGCAGTGACAGTCCTGATTCCTGCCCTGCCCACCCAGGTGGTTCTACATTGTTGTGGTGCCCATTGACCGTGTGGGCGGGAGCATGCTGA
CircID chr1:43605389|43605588
ORF Type ORF6
Protein Length 25
Nucleotide Length 78
Protein Sequence MPHVQDPSLVRCAHEVSGEAGQGWR
Nucleotide Sequence ATGCCCCATGTGCAAGACCCCTCGCTTGTCAGGTGTGCACACGAGGTATCGGGGGAGGCGGGGCAGGGCTGGAGGTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab