CircRNA Information

General Information
circRNA Basic Information
CircID chr1:43620852|43620981
Strand +
CircType exon
Host Gene ENSG00000142949.15;
Algorism CIRI2;
Sequence CGTGATAGGCCCATCCTGTCCAAACTGCTCCTTGGTCTTATGCACCTGCCCGATGAAGTCAATGAATCCCTCGCCTGTCTTGGGCACGCCCTGCTCTGGCCAGTCTGTGAACTGGAACTGCCGGATTGTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:43620852|43620981 hsa-miR-27a-5p 0 0 1
chr1:43620852|43620981 hsa-miR-27a-3p 0 0 1
chr1:43620852|43620981 hsa-miR-27b-5p 0 0 1
chr1:43620852|43620981 hsa-miR-27b-3p 0 0 1
chr1:43620852|43620981 hsa-miR-193b-5p 0 0 1
chr1:43620852|43620981 hsa-miR-193b-3p 0 0 1
chr1:43620852|43620981 hsa-miR-617 0 0 1
chr1:43620852|43620981 hsa-miR-145-5p 0 0 1
chr1:43620852|43620981 hsa-miR-513a-5p 0 0 1
chr1:43620852|43620981 hsa-miR-193a-3p 0 0 1
chr1:43620852|43620981 hsa-miR-664 0 0 1
chr1:43620852|43620981 hsa-miR-1268 0 0 1
chr1:43620852|43620981 hsa-miR-612 1 0 0
chr1:43620852|43620981 hsa-miR-1268a 1 0 0
chr1:43620852|43620981 hsa-miR-2278 0 1 0
chr1:43620852|43620981 hsa-miR-3141 1 0 0
chr1:43620852|43620981 hsa-miR-4253 1 0 0
chr1:43620852|43620981 hsa-miR-4270 1 0 0
chr1:43620852|43620981 hsa-miR-3665 1 0 0
chr1:43620852|43620981 hsa-miR-1268b 1 0 0
chr1:43620852|43620981 hsa-miR-4494 0 1 0
chr1:43620852|43620981 hsa-miR-4710 1 0 0
chr1:43620852|43620981 hsa-miR-4739 1 0 0
chr1:43620852|43620981 hsa-miR-5090 1 0 0
chr1:43620852|43620981 hsa-miR-5194 1 0 0
chr1:43620852|43620981 hsa-miR-5787 1 0 0
chr1:43620852|43620981 hsa-miR-6081 1 1 0
chr1:43620852|43620981 hsa-miR-6860 1 0 0
chr1:43620852|43620981 hsa-miR-12122 1 1 0
chr1:43620852|43620981 hsa-miR-12128 1 0 0
chr1:43620852|43620981 hsa-miR-4435 0 1 0
chr1:43620852|43620981 hsa-miR-6825-5p 1 0 0
chr1:43620852|43620981 hsa-miR-125a-3p 1 0 0
chr1:43620852|43620981 hsa-miR-3934-5p 0 1 0
chr1:43620852|43620981 hsa-miR-4786-5p 1 0 0
chr1:43620852|43620981 hsa-miR-6890-5p 1 0 0
chr1:43620852|43620981 hsa-miR-6721-5p 1 1 0
chr1:43620852|43620981 hsa-miR-548au-3p 0 1 0
chr1:43620852|43620981 hsa-miR-4640-5p 1 0 0
chr1:43620852|43620981 hsa-miR-6771-5p 1 0 0
chr1:43620852|43620981 hsa-miR-4690-5p 1 0 0
chr1:43620852|43620981 hsa-miR-149-3p 1 0 0
chr1:43620852|43620981 hsa-miR-6824-5p 1 0 0
chr1:43620852|43620981 hsa-miR-7850-5p 0 1 0
chr1:43620852|43620981 hsa-miR-7112-5p 1 1 0
chr1:43620852|43620981 hsa-miR-584-3p 0 1 0
chr1:43620852|43620981 hsa-miR-6501-3p 0 1 0
chr1:43620852|43620981 hsa-miR-3126-3p 1 0 0
chr1:43620852|43620981 hsa-miR-1207-5p 1 0 0
chr1:43620852|43620981 hsa-miR-4763-3p 1 0 0
chr1:43620852|43620981 hsa-miR-6787-5p 1 0 0
chr1:43620852|43620981 hsa-miR-6816-5p 1 0 0
chr1:43620852|43620981 hsa-miR-6893-5p 1 0 0
chr1:43620852|43620981 hsa-miR-6775-5p 1 0 0
chr1:43620852|43620981 hsa-miR-6743-5p 1 0 0
chr1:43620852|43620981 hsa-miR-6774-5p 1 0 0
chr1:43620852|43620981 hsa-miR-6808-5p 1 0 0
chr1:43620852|43620981 hsa-miR-6879-5p 1 0 0
chr1:43620852|43620981 hsa-miR-3620-5p 1 0 0
chr1:43620852|43620981 hsa-miR-6836-5p 1 1 0
chr1:43620852|43620981 hsa-miR-10396b-5p 1 0 0
chr1:43620852|43620981 hsa-miR-4649-5p 1 0 0
chr1:43620852|43620981 hsa-miR-6729-5p 1 0 0
chr1:43620852|43620981 hsa-miR-6735-5p 0 1 0
chr1:43620852|43620981 hsa-miR-3187-5p 1 0 0
chr1:43620852|43620981 hsa-miR-4436b-3p 1 0 0
chr1:43620852|43620981 hsa-miR-10394-3p 1 0 0
chr1:43620852|43620981 hsa-miR-5195-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr1:43620852|43620981
ORF Type ORF1
Protein Length 38
Nucleotide Length 114
Protein Sequence MSKLLLGLMHLPDEVNESLACLGHALLWPVCELELPDC
Nucleotide Sequence CTGTCCAAACTGCTCCTTGGTCTTATGCACCTGCCCGATGAAGTCAATGAATCCCTCGCCTGTCTTGGGCACGCCCTGCTCTGGCCAGTCTGTGAACTGGAACTGCCGGATTGT
CircID chr1:43620852|43620981
ORF Type ORF2
Protein Length 33
Nucleotide Length 99
Protein Sequence MVLCTCPMKSMNPSPVLGTPCSGQSVNWNCRIV
Nucleotide Sequence TTGGTCTTATGCACCTGCCCGATGAAGTCAATGAATCCCTCGCCTGTCTTGGGCACGCCCTGCTCTGGCCAGTCTGTGAACTGGAACTGCCGGATTGTC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab