CircRNA Information

General Information
circRNA Basic Information
CircID chr1:43620908|43621200
Strand +
CircType exon
Host Gene ENSG00000142949.15;
Algorism CIRI2;
Sequence GCAGGGTCTTCACGGTCTGAAACATGTCGACCACGCCCTCGTAGCGCATGCGCTCCAGGACGATGCTCAGAGTGATGAACACCCCGGTGCGGCCCACGCCAGCACTGCTCAGAAACACAGTTGGGTCAGGAGTCCTGCTTGCCTCATGCAGTGGGTCTGCCAGGCCTTCAGGCCCACCCACCCCAGCCCTCCAGGGGGCCAGTCCCACCTGCAGTGCACCGTGATAGGCCCATCCTGTCCAAACTGCTCCTTGGTCTTATGCACCTGCCCGATGAAGTCAATGAATCCCTCGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:43620908|43621200 hsa-miR-217-5p 0 0 1
chr1:43620908|43621200 hsa-miR-217-3p 0 0 1
chr1:43620908|43621200 hsa-miR-193b-5p 0 0 1
chr1:43620908|43621200 hsa-miR-193b-3p 0 0 1
chr1:43620908|43621200 hsa-miR-504-5p 0 0 1
chr1:43620908|43621200 hsa-miR-504-3p 0 0 1
chr1:43620908|43621200 hsa-miR-608 1 1 1
chr1:43620908|43621200 hsa-miR-609 0 1 1
chr1:43620908|43621200 hsa-miR-617 0 0 1
chr1:43620908|43621200 hsa-miR-657 0 0 1
chr1:43620908|43621200 hsa-miR-892a 0 1 1
chr1:43620908|43621200 hsa-miR-541-5p 0 0 1
chr1:43620908|43621200 hsa-miR-541-3p 0 0 1
chr1:43620908|43621200 hsa-miR-1205 0 0 1
chr1:43620908|43621200 hsa-miR-1206 0 0 1
chr1:43620908|43621200 hsa-miR-1286 0 0 1
chr1:43620908|43621200 hsa-miR-1293 0 0 1
chr1:43620908|43621200 hsa-miR-1827 0 0 1
chr1:43620908|43621200 hsa-miR-512-3p 0 0 1
chr1:43620908|43621200 hsa-miR-654-5p 0 1 1
chr1:43620908|43621200 hsa-miR-331-3p 0 0 1
chr1:43620908|43621200 hsa-miR-342-5p 0 0 1
chr1:43620908|43621200 hsa-miR-509-3-5p 0 1 1
chr1:43620908|43621200 hsa-miR-509-5p 0 0 1
chr1:43620908|43621200 hsa-miR-193a-3p 0 0 1
chr1:43620908|43621200 hsa-miR-664 0 0 1
chr1:43620908|43621200 hsa-miR-1268 0 0 1
chr1:43620908|43621200 hsa-miR-612 1 1 0
chr1:43620908|43621200 hsa-miR-762 1 1 0
chr1:43620908|43621200 hsa-miR-1200 1 0 0
chr1:43620908|43621200 hsa-miR-1268a 0 1 0
chr1:43620908|43621200 hsa-miR-2861 1 1 0
chr1:43620908|43621200 hsa-miR-3141 1 0 0
chr1:43620908|43621200 hsa-miR-4313 0 1 0
chr1:43620908|43621200 hsa-miR-4253 1 0 0
chr1:43620908|43621200 hsa-miR-4270 1 0 0
chr1:43620908|43621200 hsa-miR-3665 1 1 0
chr1:43620908|43621200 hsa-miR-3921 0 1 0
chr1:43620908|43621200 hsa-miR-1268b 1 1 0
chr1:43620908|43621200 hsa-miR-4466 1 0 0
chr1:43620908|43621200 hsa-miR-4498 0 1 0
chr1:43620908|43621200 hsa-miR-4505 0 1 0
chr1:43620908|43621200 hsa-miR-4507 1 0 0
chr1:43620908|43621200 hsa-miR-4515 0 1 0
chr1:43620908|43621200 hsa-miR-4519 0 1 0
chr1:43620908|43621200 hsa-miR-1587 1 1 0
chr1:43620908|43621200 hsa-miR-4648 0 1 0
chr1:43620908|43621200 hsa-miR-4651 1 1 0
chr1:43620908|43621200 hsa-miR-4656 1 0 0
chr1:43620908|43621200 hsa-miR-4730 0 1 0
chr1:43620908|43621200 hsa-miR-4739 1 0 0
chr1:43620908|43621200 hsa-miR-4741 1 0 0
chr1:43620908|43621200 hsa-miR-5090 1 0 0
chr1:43620908|43621200 hsa-miR-5194 1 0 0
chr1:43620908|43621200 hsa-miR-5572 0 1 0
chr1:43620908|43621200 hsa-miR-5787 0 1 0
chr1:43620908|43621200 hsa-miR-6081 1 1 0
chr1:43620908|43621200 hsa-miR-6126 0 1 0
chr1:43620908|43621200 hsa-miR-6127 1 0 0
chr1:43620908|43621200 hsa-miR-6129 1 0 0
chr1:43620908|43621200 hsa-miR-6133 1 0 0
chr1:43620908|43621200 hsa-miR-6745 1 0 0
chr1:43620908|43621200 hsa-miR-6860 1 1 0
chr1:43620908|43621200 hsa-miR-12128 1 0 0
chr1:43620908|43621200 hsa-miR-7155-5p 0 1 0
chr1:43620908|43621200 hsa-miR-6825-5p 1 0 0
chr1:43620908|43621200 hsa-miR-3934-5p 0 1 0
chr1:43620908|43621200 hsa-miR-4786-5p 1 0 0
chr1:43620908|43621200 hsa-miR-6757-5p 1 0 0
chr1:43620908|43621200 hsa-miR-6890-5p 1 0 0
chr1:43620908|43621200 hsa-miR-6727-5p 1 0 0
chr1:43620908|43621200 hsa-miR-6759-5p 1 1 0
chr1:43620908|43621200 hsa-miR-6721-5p 1 1 0
chr1:43620908|43621200 hsa-miR-8069 1 0 0
chr1:43620908|43621200 hsa-miR-6748-5p 0 1 0
chr1:43620908|43621200 hsa-miR-6772-5p 1 0 0
chr1:43620908|43621200 hsa-miR-185-3p 1 0 0
chr1:43620908|43621200 hsa-miR-6782-5p 1 0 0
chr1:43620908|43621200 hsa-miR-4793-3p 0 1 0
chr1:43620908|43621200 hsa-miR-1226-5p 0 1 0
chr1:43620908|43621200 hsa-miR-6771-5p 1 0 0
chr1:43620908|43621200 hsa-miR-92b-5p 1 0 0
chr1:43620908|43621200 hsa-miR-378a-5p 0 1 0
chr1:43620908|43621200 hsa-miR-7850-5p 0 1 0
chr1:43620908|43621200 hsa-miR-5010-5p 1 0 0
chr1:43620908|43621200 hsa-miR-7112-5p 1 1 0
chr1:43620908|43621200 hsa-miR-106b-3p 0 1 0
chr1:43620908|43621200 hsa-miR-4746-3p 1 1 0
chr1:43620908|43621200 hsa-miR-6868-5p 0 1 0
chr1:43620908|43621200 hsa-miR-221-5p 0 1 0
chr1:43620908|43621200 hsa-miR-412-5p 0 1 0
chr1:43620908|43621200 hsa-miR-1207-5p 1 0 0
chr1:43620908|43621200 hsa-miR-4763-3p 1 0 0
chr1:43620908|43621200 hsa-miR-6769b-5p 1 1 0
chr1:43620908|43621200 hsa-miR-6812-5p 1 1 0
chr1:43620908|43621200 hsa-miR-6816-5p 1 0 0
chr1:43620908|43621200 hsa-miR-6893-5p 1 0 0
chr1:43620908|43621200 hsa-miR-6775-5p 1 0 0
chr1:43620908|43621200 hsa-miR-6726-5p 1 0 0
chr1:43620908|43621200 hsa-miR-6737-5p 1 1 0
chr1:43620908|43621200 hsa-miR-6743-5p 1 0 0
chr1:43620908|43621200 hsa-miR-6752-5p 1 0 0
chr1:43620908|43621200 hsa-miR-6756-5p 1 1 0
chr1:43620908|43621200 hsa-miR-6803-5p 1 0 0
chr1:43620908|43621200 hsa-miR-6813-5p 1 0 0
chr1:43620908|43621200 hsa-miR-6819-5p 1 1 0
chr1:43620908|43621200 hsa-miR-1249-5p 1 0 0
chr1:43620908|43621200 hsa-miR-6722-3p 1 0 0
chr1:43620908|43621200 hsa-miR-6774-5p 1 0 0
chr1:43620908|43621200 hsa-miR-6875-5p 1 0 0
chr1:43620908|43621200 hsa-miR-6879-5p 1 0 0
chr1:43620908|43621200 hsa-miR-3620-5p 1 1 0
chr1:43620908|43621200 hsa-miR-6836-5p 1 0 0
chr1:43620908|43621200 hsa-miR-328-5p 1 0 0
chr1:43620908|43621200 hsa-miR-6738-5p 1 0 0
chr1:43620908|43621200 hsa-miR-675-5p 1 0 0
chr1:43620908|43621200 hsa-miR-6846-5p 1 0 0
chr1:43620908|43621200 hsa-miR-6848-5p 1 1 0
chr1:43620908|43621200 hsa-miR-3187-5p 1 0 0
chr1:43620908|43621200 hsa-miR-4436b-3p 1 0 0
chr1:43620908|43621200 hsa-miR-939-5p 1 0 0
chr1:43620908|43621200 hsa-miR-3199 0 1 0
chr1:43620908|43621200 hsa-miR-10394-3p 1 0 0
chr1:43620908|43621200 hsa-miR-3940-5p 1 0 0
chr1:43620908|43621200 hsa-miR-1199-5p 1 0 0
chr1:43620908|43621200 hsa-miR-1914-3p 1 0 0
chr1:43620908|43621200 hsa-miR-6855-5p 1 0 0
chr1:43620908|43621200 hsa-miR-6766-5p 1 0 0
chr1:43620908|43621200 hsa-miR-6785-5p 1 0 0
chr1:43620908|43621200 hsa-miR-6724-5p 1 0 0
chr1:43620908|43621200 hsa-miR-10394-5p 0 1 0
chr1:43620908|43621200 hsa-miR-1912-5p 1 0 0
chr1:43620908|43621200 hsa-miR-4653-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr1:43620908|43621200
ORF Type ORF1
Protein Length 57
Nucleotide Length 171
Protein Sequence MGQESCLPHAVGLPGLQAHPPQPSRGPVPPAVHRDRPILSKLLLGLMHLPDEVNESL
Nucleotide Sequence TTGGGTCAGGAGTCCTGCTTGCCTCATGCAGTGGGTCTGCCAGGCCTTCAGGCCCACCCACCCCAGCCCTCCAGGGGGCCAGTCCCACCTGCAGTGCACCGTGATAGGCCCATCCTGTCCAAACTGCTCCTTGGTCTTATGCACCTGCCCGATGAAGTCAATGAATCCCTC
CircID chr1:43620908|43621200
ORF Type ORF2
Protein Length 92
Nucleotide Length 276
Protein Sequence MKHVDHALVAHALQDDAQSDEHPGAAHASTAQKHSWVRSPACLMQWVCQAFRPTHPSPPGGQSHLQCTVIGPSCPNCSLVLCTCPMKSMNPS
Nucleotide Sequence CTGAAACATGTCGACCACGCCCTCGTAGCGCATGCGCTCCAGGACGATGCTCAGAGTGATGAACACCCCGGTGCGGCCCACGCCAGCACTGCTCAGAAACACAGTTGGGTCAGGAGTCCTGCTTGCCTCATGCAGTGGGTCTGCCAGGCCTTCAGGCCCACCCACCCCAGCCCTCCAGGGGGCCAGTCCCACCTGCAGTGCACCGTGATAGGCCCATCCTGTCCAAACTGCTCCTTGGTCTTATGCACCTGCCCGATGAAGTCAATGAATCCCTCG
CircID chr1:43620908|43621200
ORF Type ORF3
Protein Length 58
Nucleotide Length 177
Protein Sequence MRSRTMLRVMNTPVRPTPALLRNTVGSGVLLASCSGSARPSGPPTPALQGASPTCSAP
Nucleotide Sequence ATGCGCTCCAGGACGATGCTCAGAGTGATGAACACCCCGGTGCGGCCCACGCCAGCACTGCTCAGAAACACAGTTGGGTCAGGAGTCCTGCTTGCCTCATGCAGTGGGTCTGCCAGGCCTTCAGGCCCACCCACCCCAGCCCTCCAGGGGGCCAGTCCCACCTGCAGTGCACCGTGA
CircID chr1:43620908|43621200
ORF Type ORF4
Protein Length 37
Nucleotide Length 114
Protein Sequence MTSSGRCIRPRSSLDRMGLSRCTAGGTGPLEGWGGWA
Nucleotide Sequence TTGACTTCATCGGGCAGGTGCATAAGACCAAGGAGCAGTTTGGACAGGATGGGCCTATCACGGTGCACTGCAGGTGGGACTGGCCCCCTGGAGGGCTGGGGTGGGTGGGCCTGA
CircID chr1:43620908|43621200
ORF Type ORF5
Protein Length 71
Nucleotide Length 213
Protein Sequence MQVGLAPWRAGVGGPEGLADPLHEASRTPDPTVFLSSAGVGRTGVFITLSIVLERMRYEGVVDMFQTVKTL
Nucleotide Sequence CTGCAGGTGGGACTGGCCCCCTGGAGGGCTGGGGTGGGTGGGCCTGAAGGCCTGGCAGACCCACTGCATGAGGCAAGCAGGACTCCTGACCCAACTGTGTTTCTGAGCAGTGCTGGCGTGGGCCGCACCGGGGTGTTCATCACTCTGAGCATCGTCCTGGAGCGCATGCGCTACGAGGGCGTGGTCGACATGTTTCAGACCGTGAAGACCCTG
CircID chr1:43620908|43621200
ORF Type ORF6
Protein Length 25
Nucleotide Length 78
Protein Sequence MGWVGLKAWQTHCMRQAGLLTQLCF
Nucleotide Sequence CTGGGGTGGGTGGGCCTGAAGGCCTGGCAGACCCACTGCATGAGGCAAGCAGGACTCCTGACCCAACTGTGTTTCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab