CircRNA Information

General Information
circRNA Basic Information
CircID chr1:43957090|43957195
Strand +
CircType exon
Host Gene ENSG00000117408.9;
Algorism CIRI2;
Sequence CCTGAGAAGCAGATGAAGGCCTTTTATACTGCCTGGATCCTGACCCTGGATCCTGCCCCCAAGCCCAGGAGCCTACCCCAGTACCCCCACAACTCTGCAACAATAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:43957090|43957195 hsa-miR-205-5p 0 0 1
chr1:43957090|43957195 hsa-miR-205-3p 0 0 1
chr1:43957090|43957195 hsa-miR-1266-5p 0 0 1
chr1:43957090|43957195 hsa-miR-1266-3p 0 0 1
chr1:43957090|43957195 hsa-miR-1275 0 0 1
chr1:43957090|43957195 hsa-miR-491-5p 0 0 1
chr1:43957090|43957195 hsa-miR-486-3p 0 0 1
chr1:43957090|43957195 hsa-miR-608 1 0 0
chr1:43957090|43957195 hsa-miR-637 1 0 0
chr1:43957090|43957195 hsa-miR-762 1 0 0
chr1:43957090|43957195 hsa-miR-3132 1 0 0
chr1:43957090|43957195 hsa-miR-3142 0 1 0
chr1:43957090|43957195 hsa-miR-4296 1 0 0
chr1:43957090|43957195 hsa-miR-4322 1 0 0
chr1:43957090|43957195 hsa-miR-4265 1 0 0
chr1:43957090|43957195 hsa-miR-378g 0 1 0
chr1:43957090|43957195 hsa-miR-4440 1 0 0
chr1:43957090|43957195 hsa-miR-4488 1 1 0
chr1:43957090|43957195 hsa-miR-4507 1 0 0
chr1:43957090|43957195 hsa-miR-4514 0 1 0
chr1:43957090|43957195 hsa-miR-1587 1 0 0
chr1:43957090|43957195 hsa-miR-4651 1 0 0
chr1:43957090|43957195 hsa-miR-4688 1 0 0
chr1:43957090|43957195 hsa-miR-4692 0 1 0
chr1:43957090|43957195 hsa-miR-4736 1 0 0
chr1:43957090|43957195 hsa-miR-5090 1 0 0
chr1:43957090|43957195 hsa-miR-5572 1 0 0
chr1:43957090|43957195 hsa-miR-5787 1 0 0
chr1:43957090|43957195 hsa-miR-7704 1 0 0
chr1:43957090|43957195 hsa-miR-8089 1 0 0
chr1:43957090|43957195 hsa-miR-7155-5p 1 0 0
chr1:43957090|43957195 hsa-miR-4687-3p 1 0 0
chr1:43957090|43957195 hsa-miR-6728-5p 1 0 0
chr1:43957090|43957195 hsa-miR-6890-5p 1 0 0
chr1:43957090|43957195 hsa-miR-6741-5p 1 0 0
chr1:43957090|43957195 hsa-miR-6727-5p 1 0 0
chr1:43957090|43957195 hsa-miR-6806-5p 1 0 0
chr1:43957090|43957195 hsa-miR-6721-5p 0 1 0
chr1:43957090|43957195 hsa-miR-197-5p 1 0 0
chr1:43957090|43957195 hsa-miR-6742-5p 1 0 0
chr1:43957090|43957195 hsa-miR-3151-5p 1 0 0
chr1:43957090|43957195 hsa-miR-3180-3p 1 0 0
chr1:43957090|43957195 hsa-miR-6796-5p 1 1 0
chr1:43957090|43957195 hsa-miR-6881-5p 1 0 0
chr1:43957090|43957195 hsa-miR-6782-5p 1 0 0
chr1:43957090|43957195 hsa-miR-6835-5p 1 0 0
chr1:43957090|43957195 hsa-miR-7109-5p 1 0 0
chr1:43957090|43957195 hsa-miR-1229-5p 1 0 0
chr1:43957090|43957195 hsa-miR-296-3p 1 0 0
chr1:43957090|43957195 hsa-miR-6823-5p 1 0 0
chr1:43957090|43957195 hsa-miR-4713-3p 0 1 0
chr1:43957090|43957195 hsa-miR-1250-5p 1 0 0
chr1:43957090|43957195 hsa-miR-4661-3p 0 1 0
chr1:43957090|43957195 hsa-miR-503-3p 1 0 0
chr1:43957090|43957195 hsa-miR-4763-3p 1 0 0
chr1:43957090|43957195 hsa-miR-6812-5p 1 0 0
chr1:43957090|43957195 hsa-miR-6816-5p 1 0 0
chr1:43957090|43957195 hsa-miR-6726-5p 1 0 0
chr1:43957090|43957195 hsa-miR-6737-5p 1 0 0
chr1:43957090|43957195 hsa-miR-6743-5p 1 0 0
chr1:43957090|43957195 hsa-miR-6752-5p 1 0 0
chr1:43957090|43957195 hsa-miR-6756-5p 1 0 0
chr1:43957090|43957195 hsa-miR-6803-5p 1 1 0
chr1:43957090|43957195 hsa-miR-6819-5p 1 0 0
chr1:43957090|43957195 hsa-miR-6842-5p 1 0 0
chr1:43957090|43957195 hsa-miR-7110-5p 1 0 0
chr1:43957090|43957195 hsa-miR-6722-3p 1 0 0
chr1:43957090|43957195 hsa-miR-6751-5p 1 1 0
chr1:43957090|43957195 hsa-miR-7111-5p 1 0 0
chr1:43957090|43957195 hsa-miR-3620-5p 1 0 0
chr1:43957090|43957195 hsa-miR-6780b-5p 1 0 0
chr1:43957090|43957195 hsa-miR-1237-5p 1 0 0
chr1:43957090|43957195 hsa-miR-328-5p 1 1 0
chr1:43957090|43957195 hsa-miR-449c-5p 0 1 0
chr1:43957090|43957195 hsa-miR-4685-5p 1 0 0
chr1:43957090|43957195 hsa-miR-4725-3p 1 0 0
chr1:43957090|43957195 hsa-miR-6795-5p 1 0 0
chr1:43957090|43957195 hsa-miR-6846-5p 1 0 0
chr1:43957090|43957195 hsa-miR-6848-5p 1 0 0
chr1:43957090|43957195 hsa-miR-939-5p 1 0 0
chr1:43957090|43957195 hsa-miR-6855-5p 1 0 0
chr1:43957090|43957195 hsa-miR-10400-3p 1 0 0
chr1:43957090|43957195 hsa-miR-6783-3p 0 1 0
chr1:43957090|43957195 hsa-miR-137-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr1:43957090|43957195
ORF Type ORF1
Protein Length 31
Nucleotide Length 93
Protein Sequence MKAFYTAWILTLDPAPKPRSLPQYPHNSATI
Nucleotide Sequence ATGAAGGCCTTTTATACTGCCTGGATCCTGACCCTGGATCCTGCCCCCAAGCCCAGGAGCCTACCCCAGTACCCCCACAACTCTGCAACAATA
CircID chr1:43957090|43957195
ORF Type ORF2
Protein Length 34
Nucleotide Length 102
Protein Sequence MLQSCGGTGVGSWAWGQDPGSGSRQYKRPSSASQ
Nucleotide Sequence TTGTTGCAGAGTTGTGGGGGTACTGGGGTAGGCTCCTGGGCTTGGGGGCAGGATCCAGGGTCAGGATCCAGGCAGTATAAAAGGCCTTCATCTGCTTCTCAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab