CircRNA Information

General Information
circRNA Basic Information
CircID chr1:43971425|43971648
Strand -
CircType exon
Host Gene ENSG00000132768.12;
Algorism CIRI2;
Sequence CTGCTAGTCTCCAGCCCAGCTTTTCCCCAACCAGTGGGTTCCCTGAGTCCAGAGCCTATGCCCCTAGAGCGTTTTGGGCGCCGCTTCCCCCTTGCCCCAGGGAGGCGTCTAGAAGAGTATGGTGCCTTCTATGTAGGGGGCTCTAAGGCCAGCCCTGACCCAGACCTTGACCCAGACCTGAGTCGGCTGCTCTTGGGGTGGGCACCAGGTCAACCCTTCTCCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:43971425|43971648 hsa-miR-192-5p 0 0 1
chr1:43971425|43971648 hsa-miR-192-3p 0 0 1
chr1:43971425|43971648 hsa-miR-215-5p 0 0 1
chr1:43971425|43971648 hsa-miR-215-3p 0 0 1
chr1:43971425|43971648 hsa-miR-320a-5p 0 0 1
chr1:43971425|43971648 hsa-miR-320a-3p 0 0 1
chr1:43971425|43971648 hsa-miR-376c-5p 0 0 1
chr1:43971425|43971648 hsa-miR-376c-3p 0 0 1
chr1:43971425|43971648 hsa-miR-335-5p 0 0 1
chr1:43971425|43971648 hsa-miR-335-3p 0 0 1
chr1:43971425|43971648 hsa-miR-422a 1 1 1
chr1:43971425|43971648 hsa-miR-506-5p 0 0 1
chr1:43971425|43971648 hsa-miR-506-3p 0 0 1
chr1:43971425|43971648 hsa-miR-510-5p 0 0 1
chr1:43971425|43971648 hsa-miR-510-3p 0 0 1
chr1:43971425|43971648 hsa-miR-563 0 0 1
chr1:43971425|43971648 hsa-miR-625-5p 0 0 1
chr1:43971425|43971648 hsa-miR-625-3p 0 0 1
chr1:43971425|43971648 hsa-miR-631 0 1 1
chr1:43971425|43971648 hsa-miR-760 1 1 1
chr1:43971425|43971648 hsa-miR-1266-5p 0 0 1
chr1:43971425|43971648 hsa-miR-1266-3p 0 0 1
chr1:43971425|43971648 hsa-miR-1281 0 0 1
chr1:43971425|43971648 hsa-miR-1225-3p 0 0 1
chr1:43971425|43971648 hsa-miR-486-3p 0 0 1
chr1:43971425|43971648 hsa-miR-296-3p 0 1 1
chr1:43971425|43971648 hsa-miR-767-5p 0 1 1
chr1:43971425|43971648 hsa-miR-518d-5p 0 0 1
chr1:43971425|43971648 hsa-miR-519b-5p 0 0 1
chr1:43971425|43971648 hsa-miR-519c-5p 0 0 1
chr1:43971425|43971648 hsa-miR-520c-5p 0 0 1
chr1:43971425|43971648 hsa-miR-320b 1 1 1
chr1:43971425|43971648 hsa-miR-320c 1 1 1
chr1:43971425|43971648 hsa-miR-320d 1 1 1
chr1:43971425|43971648 hsa-miR-378 0 0 1
chr1:43971425|43971648 hsa-miR-124 0 0 1
chr1:43971425|43971648 hsa-miR-526a 0 0 1
chr1:43971425|43971648 hsa-miR-637 1 1 0
chr1:43971425|43971648 hsa-miR-661 1 0 0
chr1:43971425|43971648 hsa-miR-762 1 1 0
chr1:43971425|43971648 hsa-miR-1275 1 0 0
chr1:43971425|43971648 hsa-miR-2110 1 1 0
chr1:43971425|43971648 hsa-miR-3131 1 0 0
chr1:43971425|43971648 hsa-miR-378b 0 1 0
chr1:43971425|43971648 hsa-miR-3153 1 0 0
chr1:43971425|43971648 hsa-miR-3154 0 1 0
chr1:43971425|43971648 hsa-miR-3176 0 1 0
chr1:43971425|43971648 hsa-miR-320e 1 1 0
chr1:43971425|43971648 hsa-miR-378c 1 1 0
chr1:43971425|43971648 hsa-miR-4270 1 0 0
chr1:43971425|43971648 hsa-miR-4271 1 0 0
chr1:43971425|43971648 hsa-miR-3661 0 1 0
chr1:43971425|43971648 hsa-miR-3945 1 1 0
chr1:43971425|43971648 hsa-miR-378e 0 1 0
chr1:43971425|43971648 hsa-miR-378f 0 1 0
chr1:43971425|43971648 hsa-miR-378g 0 1 0
chr1:43971425|43971648 hsa-miR-4429 1 1 0
chr1:43971425|43971648 hsa-miR-4430 0 1 0
chr1:43971425|43971648 hsa-miR-4437 1 0 0
chr1:43971425|43971648 hsa-miR-4487 1 0 0
chr1:43971425|43971648 hsa-miR-4492 0 1 0
chr1:43971425|43971648 hsa-miR-4498 0 1 0
chr1:43971425|43971648 hsa-miR-4505 0 1 0
chr1:43971425|43971648 hsa-miR-4507 1 0 0
chr1:43971425|43971648 hsa-miR-4516 0 1 0
chr1:43971425|43971648 hsa-miR-4518 0 1 0
chr1:43971425|43971648 hsa-miR-4674 1 1 0
chr1:43971425|43971648 hsa-miR-4688 1 0 0
chr1:43971425|43971648 hsa-miR-8089 1 0 0
chr1:43971425|43971648 hsa-miR-11399 1 1 0
chr1:43971425|43971648 hsa-miR-12128 0 1 0
chr1:43971425|43971648 hsa-miR-6809-5p 0 1 0
chr1:43971425|43971648 hsa-miR-671-5p 1 0 0
chr1:43971425|43971648 hsa-miR-3150a-3p 1 0 0
chr1:43971425|43971648 hsa-miR-6857-5p 1 0 0
chr1:43971425|43971648 hsa-miR-6746-5p 1 0 0
chr1:43971425|43971648 hsa-miR-7160-5p 1 0 0
chr1:43971425|43971648 hsa-miR-6727-5p 1 0 0
chr1:43971425|43971648 hsa-miR-3622b-5p 1 0 0
chr1:43971425|43971648 hsa-miR-6721-5p 1 0 0
chr1:43971425|43971648 hsa-miR-197-5p 1 0 0
chr1:43971425|43971648 hsa-miR-8069 1 0 0
chr1:43971425|43971648 hsa-miR-659-3p 1 0 0
chr1:43971425|43971648 hsa-miR-6760-5p 1 0 0
chr1:43971425|43971648 hsa-miR-3934-3p 1 0 0
chr1:43971425|43971648 hsa-miR-5088-5p 1 0 0
chr1:43971425|43971648 hsa-miR-7109-5p 1 0 0
chr1:43971425|43971648 hsa-miR-1226-5p 1 0 0
chr1:43971425|43971648 hsa-miR-3944-3p 1 0 0
chr1:43971425|43971648 hsa-miR-6749-5p 1 0 0
chr1:43971425|43971648 hsa-miR-4446-3p 0 1 0
chr1:43971425|43971648 hsa-miR-6824-5p 1 0 0
chr1:43971425|43971648 hsa-miR-6789-5p 1 0 0
chr1:43971425|43971648 hsa-miR-6878-5p 1 0 0
chr1:43971425|43971648 hsa-miR-664b-5p 1 0 0
chr1:43971425|43971648 hsa-miR-4664-3p 1 0 0
chr1:43971425|43971648 hsa-miR-6778-3p 0 1 0
chr1:43971425|43971648 hsa-miR-605-3p 0 1 0
chr1:43971425|43971648 hsa-miR-518c-5p 0 1 0
chr1:43971425|43971648 hsa-miR-10400-5p 1 0 0
chr1:43971425|43971648 hsa-miR-4763-3p 1 0 0
chr1:43971425|43971648 hsa-miR-6812-5p 1 0 0
chr1:43971425|43971648 hsa-miR-6870-5p 1 0 0
chr1:43971425|43971648 hsa-miR-6775-5p 1 1 0
chr1:43971425|43971648 hsa-miR-1343-5p 1 1 0
chr1:43971425|43971648 hsa-miR-5001-5p 0 1 0
chr1:43971425|43971648 hsa-miR-6743-5p 1 1 0
chr1:43971425|43971648 hsa-miR-6754-5p 1 0 0
chr1:43971425|43971648 hsa-miR-6756-5p 1 0 0
chr1:43971425|43971648 hsa-miR-6813-5p 1 0 0
chr1:43971425|43971648 hsa-miR-6763-5p 1 1 0
chr1:43971425|43971648 hsa-miR-3620-5p 0 1 0
chr1:43971425|43971648 hsa-miR-6780b-5p 1 1 0
chr1:43971425|43971648 hsa-miR-328-5p 1 0 0
chr1:43971425|43971648 hsa-miR-4649-5p 1 0 0
chr1:43971425|43971648 hsa-miR-4725-3p 0 1 0
chr1:43971425|43971648 hsa-miR-6729-5p 1 0 0
chr1:43971425|43971648 hsa-miR-939-5p 1 0 0
chr1:43971425|43971648 hsa-miR-3940-5p 1 0 0
chr1:43971425|43971648 hsa-miR-378a-3p 0 1 0
chr1:43971425|43971648 hsa-miR-4716-3p 1 1 0
chr1:43971425|43971648 hsa-miR-6750-5p 1 1 0
chr1:43971425|43971648 hsa-miR-6791-5p 1 1 0
chr1:43971425|43971648 hsa-miR-6822-5p 1 1 0
chr1:43971425|43971648 hsa-miR-3059-3p 0 1 0
chr1:43971425|43971648 hsa-miR-1-5p 0 1 0
chr1:43971425|43971648 hsa-miR-378d 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr1:43971425|43971648
ORF Type ORF1
Protein Length 74
Nucleotide Length 222
Protein Sequence LLVSSPAFPQPVGSLSPEPMPLERFGRRFPLAPGRRLEEYGAFYVGGSKASPDPDLDPDLSRLLLGWAPGQPFS
Nucleotide Sequence CTGCTAGTCTCCAGCCCAGCTTTTCCCCAACCAGTGGGTTCCCTGAGTCCAGAGCCTATGCCCCTAGAGCGTTTTGGGCGCCGCTTCCCCCTTGCCCCAGGGAGGCGTCTAGAAGAGTATGGTGCCTTCTATGTAGGGGGCTCTAAGGCCAGCCCTGACCCAGACCTTGACCCAGACCTGAGTCGGCTGCTCTTGGGGTGGGCACCAGGTCAACCCTTCTCC
CircID chr1:43971425|43971648
ORF Type ORF2
Protein Length 34
Nucleotide Length 105
Protein Sequence MTWCPPQEQPTQVWVKVWVRAGLRAPYIEGTILF
Nucleotide Sequence TTGACCTGGTGCCCACCCCAAGAGCAGCCGACTCAGGTCTGGGTCAAGGTCTGGGTCAGGGCTGGCCTTAGAGCCCCCTACATAGAAGGCACCATACTCTTCTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab