CircRNA Information

General Information
circRNA Basic Information
CircID chr1:43996967|43997095
Strand +
CircType exon
Host Gene ENSG00000196517.10;
Algorism CIRI2;
Sequence TGCCCAGTGTTACTTGTCAGGCTGTGCTGCCCAGCCCTGTTTATCTGTGTAATTATTTTTGTAAACATTGTATTCTCTGTGGTCGCCACCTCCTCGCCCCCAGCCTCGGGTTCAGTCTGTCTTCCAGGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:43996967|43997095 hsa-miR-141-5p 0 0 1
chr1:43996967|43997095 hsa-miR-141-3p 0 0 1
chr1:43996967|43997095 hsa-miR-200a-5p 0 0 1
chr1:43996967|43997095 hsa-miR-200a-3p 0 0 1
chr1:43996967|43997095 hsa-miR-577 0 0 1
chr1:43996967|43997095 hsa-miR-612 0 1 1
chr1:43996967|43997095 hsa-miR-637 1 0 1
chr1:43996967|43997095 hsa-miR-802 0 0 1
chr1:43996967|43997095 hsa-miR-485-5p 0 1 1
chr1:43996967|43997095 hsa-miR-140-3p 0 0 1
chr1:43996967|43997095 hsa-miR-524-5p 0 0 1
chr1:43996967|43997095 hsa-miR-520d-5p 0 0 1
chr1:43996967|43997095 hsa-miR-151-5p 0 0 1
chr1:43996967|43997095 hsa-miR-7 0 0 1
chr1:43996967|43997095 hsa-miR-1285 0 0 1
chr1:43996967|43997095 hsa-miR-1254 0 0 1
chr1:43996967|43997095 hsa-miR-1273 0 0 1
chr1:43996967|43997095 hsa-miR-663a 1 0 0
chr1:43996967|43997095 hsa-miR-762 1 1 0
chr1:43996967|43997095 hsa-miR-1268a 1 0 0
chr1:43996967|43997095 hsa-miR-3131 1 0 0
chr1:43996967|43997095 hsa-miR-3141 1 0 0
chr1:43996967|43997095 hsa-miR-3196 1 0 0
chr1:43996967|43997095 hsa-miR-4293 0 1 0
chr1:43996967|43997095 hsa-miR-3652 1 0 0
chr1:43996967|43997095 hsa-miR-3929 1 0 0
chr1:43996967|43997095 hsa-miR-1268b 1 0 0
chr1:43996967|43997095 hsa-miR-4488 1 0 0
chr1:43996967|43997095 hsa-miR-4492 1 1 0
chr1:43996967|43997095 hsa-miR-4494 1 1 0
chr1:43996967|43997095 hsa-miR-4498 1 1 0
chr1:43996967|43997095 hsa-miR-4505 1 1 0
chr1:43996967|43997095 hsa-miR-2392 1 0 0
chr1:43996967|43997095 hsa-miR-4507 1 0 0
chr1:43996967|43997095 hsa-miR-4508 1 1 0
chr1:43996967|43997095 hsa-miR-4513 1 0 0
chr1:43996967|43997095 hsa-miR-4539 1 0 0
chr1:43996967|43997095 hsa-miR-4651 1 0 0
chr1:43996967|43997095 hsa-miR-4656 1 0 0
chr1:43996967|43997095 hsa-miR-4672 1 1 0
chr1:43996967|43997095 hsa-miR-4689 1 0 0
chr1:43996967|43997095 hsa-miR-4706 1 1 0
chr1:43996967|43997095 hsa-miR-4710 1 0 0
chr1:43996967|43997095 hsa-miR-5787 1 1 0
chr1:43996967|43997095 hsa-miR-6085 1 0 0
chr1:43996967|43997095 hsa-miR-6086 1 0 0
chr1:43996967|43997095 hsa-miR-6090 1 0 0
chr1:43996967|43997095 hsa-miR-6860 0 1 0
chr1:43996967|43997095 hsa-miR-8072 1 0 0
chr1:43996967|43997095 hsa-miR-8085 1 0 0
chr1:43996967|43997095 hsa-miR-8089 1 0 0
chr1:43996967|43997095 hsa-miR-7-5p 0 1 0
chr1:43996967|43997095 hsa-miR-4731-5p 1 1 0
chr1:43996967|43997095 hsa-miR-6765-5p 1 0 0
chr1:43996967|43997095 hsa-miR-7106-5p 1 0 0
chr1:43996967|43997095 hsa-miR-6825-5p 1 0 0
chr1:43996967|43997095 hsa-miR-6089 1 0 0
chr1:43996967|43997095 hsa-miR-7847-3p 1 0 0
chr1:43996967|43997095 hsa-miR-4695-5p 1 0 0
chr1:43996967|43997095 hsa-miR-6768-5p 1 1 0
chr1:43996967|43997095 hsa-miR-6732-5p 1 0 0
chr1:43996967|43997095 hsa-miR-6805-5p 1 0 0
chr1:43996967|43997095 hsa-miR-486-3p 1 0 0
chr1:43996967|43997095 hsa-miR-6782-5p 1 0 0
chr1:43996967|43997095 hsa-miR-30b-3p 1 0 0
chr1:43996967|43997095 hsa-miR-7109-5p 1 0 0
chr1:43996967|43997095 hsa-miR-6784-5p 1 1 0
chr1:43996967|43997095 hsa-miR-1908-5p 1 0 0
chr1:43996967|43997095 hsa-miR-1228-5p 1 0 0
chr1:43996967|43997095 hsa-miR-296-3p 1 0 0
chr1:43996967|43997095 hsa-miR-6749-5p 1 0 0
chr1:43996967|43997095 hsa-miR-7854-3p 1 0 0
chr1:43996967|43997095 hsa-miR-4787-5p 1 0 0
chr1:43996967|43997095 hsa-miR-4446-3p 1 1 0
chr1:43996967|43997095 hsa-miR-6789-5p 1 0 0
chr1:43996967|43997095 hsa-miR-4724-5p 0 1 0
chr1:43996967|43997095 hsa-miR-3144-5p 1 0 0
chr1:43996967|43997095 hsa-miR-1207-5p 1 0 0
chr1:43996967|43997095 hsa-miR-1273h-5p 1 0 0
chr1:43996967|43997095 hsa-miR-4763-3p 1 0 0
chr1:43996967|43997095 hsa-miR-6787-5p 1 0 0
chr1:43996967|43997095 hsa-miR-6812-5p 1 0 0
chr1:43996967|43997095 hsa-miR-6816-5p 1 0 0
chr1:43996967|43997095 hsa-miR-6865-5p 0 1 0
chr1:43996967|43997095 hsa-miR-6870-5p 1 0 0
chr1:43996967|43997095 hsa-miR-5001-5p 1 1 0
chr1:43996967|43997095 hsa-miR-6726-5p 1 0 0
chr1:43996967|43997095 hsa-miR-6737-5p 1 0 0
chr1:43996967|43997095 hsa-miR-6752-5p 1 1 0
chr1:43996967|43997095 hsa-miR-6756-5p 1 0 0
chr1:43996967|43997095 hsa-miR-6803-5p 1 1 0
chr1:43996967|43997095 hsa-miR-6813-5p 1 0 0
chr1:43996967|43997095 hsa-miR-6815-5p 1 1 0
chr1:43996967|43997095 hsa-miR-6819-5p 1 0 0
chr1:43996967|43997095 hsa-miR-6851-5p 1 1 0
chr1:43996967|43997095 hsa-miR-7110-5p 1 0 0
chr1:43996967|43997095 hsa-miR-6751-5p 1 1 0
chr1:43996967|43997095 hsa-miR-6808-5p 1 0 0
chr1:43996967|43997095 hsa-miR-7111-5p 1 0 0
chr1:43996967|43997095 hsa-miR-3620-5p 1 0 0
chr1:43996967|43997095 hsa-miR-4728-5p 1 0 0
chr1:43996967|43997095 hsa-miR-5189-5p 0 1 0
chr1:43996967|43997095 hsa-miR-1237-5p 1 1 0
chr1:43996967|43997095 hsa-miR-4632-5p 1 0 0
chr1:43996967|43997095 hsa-miR-4649-5p 1 1 0
chr1:43996967|43997095 hsa-miR-4685-5p 1 0 0
chr1:43996967|43997095 hsa-miR-4749-5p 1 0 0
chr1:43996967|43997095 hsa-miR-6729-5p 1 1 0
chr1:43996967|43997095 hsa-miR-675-5p 1 0 0
chr1:43996967|43997095 hsa-miR-6777-5p 1 0 0
chr1:43996967|43997095 hsa-miR-6846-5p 1 0 0
chr1:43996967|43997095 hsa-miR-6848-5p 1 0 0
chr1:43996967|43997095 hsa-miR-6858-5p 1 0 0
chr1:43996967|43997095 hsa-miR-6889-5p 1 0 0
chr1:43996967|43997095 hsa-miR-3187-5p 1 1 0
chr1:43996967|43997095 hsa-miR-939-5p 1 0 0
chr1:43996967|43997095 hsa-miR-1285-3p 0 1 0
chr1:43996967|43997095 hsa-miR-1199-5p 1 0 0
chr1:43996967|43997095 hsa-miR-4665-5p 1 0 0
chr1:43996967|43997095 hsa-miR-3116 0 1 0
chr1:43996967|43997095 hsa-miR-4700-5p 1 0 0
chr1:43996967|43997095 hsa-miR-3679-5p 1 0 0
chr1:43996967|43997095 hsa-miR-3689d 0 1 0
chr1:43996967|43997095 hsa-miR-6884-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr1:43996967|43997095
ORF Type ORF1
Protein Length 36
Nucleotide Length 108
Protein Sequence MCCPALFICVIIFVNIVFSVVATSSPPASGSVCLPG
Nucleotide Sequence CTGTGCTGCCCAGCCCTGTTTATCTGTGTAATTATTTTTGTAAACATTGTATTCTCTGTGGTCGCCACCTCCTCGCCCCCAGCCTCGGGTTCAGTCTGTCTTCCAGGC
CircID chr1:43996967|43997095
ORF Type ORF2
Protein Length 34
Nucleotide Length 102
Protein Sequence MPSPVYLCNYFCKHCILCGRHLLAPSLGFSLSSR
Nucleotide Sequence CTGCCCAGCCCTGTTTATCTGTGTAATTATTTTTGTAAACATTGTATTCTCTGTGGTCGCCACCTCCTCGCCCCCAGCCTCGGGTTCAGTCTGTCTTCCAGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab