CircRNA Information

General Information
circRNA Basic Information
CircID chr1:45008673|45009408
Strand -
CircType exon
Host Gene ENSG00000126107.13;
Algorism CIRI2;
Sequence CCCTCGGAGACGAACATCAATCCCATCATCTCGGCACTCCACGATGCGGATCTCGATGATCGGGAGGTGGACGGTCATGTCCTCCAGGACACAGACATCCCCGATGAGGGTCCTGAGGAGATGAGTGTGAAGCACTTCAGATACCTCCTGCCTCAGGCCTTCAGAGACTGCTGGAGTCTCACTCAAACTTAGGCTTTCAAGCTGGGCTAGGCTTGGAACATGCCCTACTTCCCTCCCCAGGCCAGCGTGCTCACTCGTCAATGCTCACGTCACTCAGCTTCTTCAGGTTGTCCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:45008673|45009408 hsa-miR-122-5p 0 0 1
chr1:45008673|45009408 hsa-miR-122-3p 0 0 1
chr1:45008673|45009408 hsa-miR-143-5p 0 0 1
chr1:45008673|45009408 hsa-miR-143-3p 0 0 1
chr1:45008673|45009408 hsa-miR-302a-5p 0 0 1
chr1:45008673|45009408 hsa-miR-302a-3p 0 0 1
chr1:45008673|45009408 hsa-miR-302b-5p 0 0 1
chr1:45008673|45009408 hsa-miR-302b-3p 0 0 1
chr1:45008673|45009408 hsa-miR-302c-5p 0 0 1
chr1:45008673|45009408 hsa-miR-302c-3p 0 0 1
chr1:45008673|45009408 hsa-miR-302d-5p 0 0 1
chr1:45008673|45009408 hsa-miR-302d-3p 0 0 1
chr1:45008673|45009408 hsa-miR-372-5p 0 0 1
chr1:45008673|45009408 hsa-miR-372-3p 0 0 1
chr1:45008673|45009408 hsa-miR-373-5p 0 0 1
chr1:45008673|45009408 hsa-miR-373-3p 0 0 1
chr1:45008673|45009408 hsa-miR-377-5p 0 0 1
chr1:45008673|45009408 hsa-miR-377-3p 0 0 1
chr1:45008673|45009408 hsa-miR-488-5p 0 0 1
chr1:45008673|45009408 hsa-miR-488-3p 0 0 1
chr1:45008673|45009408 hsa-miR-202-5p 0 0 1
chr1:45008673|45009408 hsa-miR-202-3p 0 0 1
chr1:45008673|45009408 hsa-miR-520e-5p 0 0 1
chr1:45008673|45009408 hsa-miR-520e-3p 0 0 1
chr1:45008673|45009408 hsa-miR-520f-5p 0 0 1
chr1:45008673|45009408 hsa-miR-520f-3p 0 0 1
chr1:45008673|45009408 hsa-miR-520b-5p 0 0 1
chr1:45008673|45009408 hsa-miR-520b-3p 0 0 1
chr1:45008673|45009408 hsa-miR-573 0 1 1
chr1:45008673|45009408 hsa-miR-593-5p 0 0 1
chr1:45008673|45009408 hsa-miR-593-3p 0 0 1
chr1:45008673|45009408 hsa-miR-661 1 0 1
chr1:45008673|45009408 hsa-miR-766-5p 0 0 1
chr1:45008673|45009408 hsa-miR-766-3p 0 0 1
chr1:45008673|45009408 hsa-miR-765 0 0 1
chr1:45008673|45009408 hsa-miR-939-5p 0 0 1
chr1:45008673|45009408 hsa-miR-939-3p 0 0 1
chr1:45008673|45009408 hsa-miR-940 0 0 1
chr1:45008673|45009408 hsa-miR-302e 0 0 1
chr1:45008673|45009408 hsa-miR-1827 0 1 1
chr1:45008673|45009408 hsa-miR-542-5p 0 0 1
chr1:45008673|45009408 hsa-miR-508-5p 0 0 1
chr1:45008673|45009408 hsa-miR-654-3p 0 0 1
chr1:45008673|45009408 hsa-miR-338-3p 0 0 1
chr1:45008673|45009408 hsa-miR-520d-3p 0 0 1
chr1:45008673|45009408 hsa-miR-520a-3p 0 0 1
chr1:45008673|45009408 hsa-miR-520c-3p 0 0 1
chr1:45008673|45009408 hsa-miR-371-3p 0 0 1
chr1:45008673|45009408 hsa-miR-612 1 0 0
chr1:45008673|45009408 hsa-miR-637 1 0 0
chr1:45008673|45009408 hsa-miR-658 1 1 0
chr1:45008673|45009408 hsa-miR-762 1 0 0
chr1:45008673|45009408 hsa-miR-1538 1 0 0
chr1:45008673|45009408 hsa-miR-2861 1 0 0
chr1:45008673|45009408 hsa-miR-3135a 1 0 0
chr1:45008673|45009408 hsa-miR-3176 0 1 0
chr1:45008673|45009408 hsa-miR-4253 0 1 0
chr1:45008673|45009408 hsa-miR-4254 0 1 0
chr1:45008673|45009408 hsa-miR-4440 1 0 0
chr1:45008673|45009408 hsa-miR-4510 1 0 0
chr1:45008673|45009408 hsa-miR-1587 1 0 0
chr1:45008673|45009408 hsa-miR-3977 0 1 0
chr1:45008673|45009408 hsa-miR-4651 1 0 0
chr1:45008673|45009408 hsa-miR-4656 1 0 0
chr1:45008673|45009408 hsa-miR-4739 1 0 0
chr1:45008673|45009408 hsa-miR-5787 1 0 0
chr1:45008673|45009408 hsa-miR-6090 1 0 0
chr1:45008673|45009408 hsa-miR-6126 0 1 0
chr1:45008673|45009408 hsa-miR-8077 1 1 0
chr1:45008673|45009408 hsa-miR-8089 1 1 0
chr1:45008673|45009408 hsa-miR-504-3p 0 1 0
chr1:45008673|45009408 hsa-miR-6861-5p 1 0 0
chr1:45008673|45009408 hsa-miR-6825-5p 1 0 0
chr1:45008673|45009408 hsa-miR-6857-5p 1 0 0
chr1:45008673|45009408 hsa-miR-6799-5p 1 0 0
chr1:45008673|45009408 hsa-miR-1236-5p 1 1 0
chr1:45008673|45009408 hsa-miR-5187-5p 0 1 0
chr1:45008673|45009408 hsa-miR-4722-5p 0 1 0
chr1:45008673|45009408 hsa-miR-7109-5p 1 0 0
chr1:45008673|45009408 hsa-miR-1229-5p 1 0 0
chr1:45008673|45009408 hsa-miR-6771-5p 1 0 0
chr1:45008673|45009408 hsa-miR-3677-3p 1 0 0
chr1:45008673|45009408 hsa-miR-6749-5p 1 0 0
chr1:45008673|45009408 hsa-miR-425-3p 1 0 0
chr1:45008673|45009408 hsa-miR-149-3p 1 1 0
chr1:45008673|45009408 hsa-miR-6824-5p 1 0 0
chr1:45008673|45009408 hsa-miR-6869-5p 1 0 0
chr1:45008673|45009408 hsa-let-7e-5p 0 1 0
chr1:45008673|45009408 hsa-miR-5004-5p 0 1 0
chr1:45008673|45009408 hsa-miR-1233-5p 1 0 0
chr1:45008673|45009408 hsa-miR-6812-5p 1 0 0
chr1:45008673|45009408 hsa-miR-6816-5p 1 0 0
chr1:45008673|45009408 hsa-miR-6756-5p 1 0 0
chr1:45008673|45009408 hsa-miR-6803-5p 1 0 0
chr1:45008673|45009408 hsa-miR-6819-5p 1 0 0
chr1:45008673|45009408 hsa-miR-7107-5p 1 1 0
chr1:45008673|45009408 hsa-miR-1249-5p 1 1 0
chr1:45008673|45009408 hsa-miR-6763-5p 1 1 0
chr1:45008673|45009408 hsa-miR-6779-5p 1 0 0
chr1:45008673|45009408 hsa-miR-6780a-5p 1 0 0
chr1:45008673|45009408 hsa-miR-6797-5p 1 1 0
chr1:45008673|45009408 hsa-miR-6808-5p 0 1 0
chr1:45008673|45009408 hsa-miR-7111-5p 1 0 0
chr1:45008673|45009408 hsa-miR-3620-5p 1 0 0
chr1:45008673|45009408 hsa-miR-4728-5p 1 1 0
chr1:45008673|45009408 hsa-miR-5196-5p 1 0 0
chr1:45008673|45009408 hsa-miR-6780b-5p 1 0 0
chr1:45008673|45009408 hsa-miR-328-5p 1 0 0
chr1:45008673|45009408 hsa-miR-6883-5p 1 1 0
chr1:45008673|45009408 hsa-miR-6889-5p 1 0 0
chr1:45008673|45009408 hsa-miR-6885-5p 1 0 0
chr1:45008673|45009408 hsa-miR-4758-5p 1 0 0
chr1:45008673|45009408 hsa-miR-4665-5p 1 0 0
chr1:45008673|45009408 hsa-miR-3116 1 0 0
chr1:45008673|45009408 hsa-miR-6785-5p 0 1 0
chr1:45008673|45009408 hsa-miR-4667-5p 0 1 0
chr1:45008673|45009408 hsa-miR-6724-5p 1 0 0
chr1:45008673|45009408 hsa-miR-6791-5p 1 0 0
chr1:45008673|45009408 hsa-miR-6797-3p 0 1 0
chr1:45008673|45009408 hsa-miR-3616-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr1:45008673|45009408
ORF Type ORF1
Protein Length 25
Nucleotide Length 75
Protein Sequence MPYFPPQASVLTRQCSRHSASSGCP
Nucleotide Sequence ATGCCCTACTTCCCTCCCCAGGCCAGCGTGCTCACTCGTCAATGCTCACGTCACTCAGCTTCTTCAGGTTGTCCC
CircID chr1:45008673|45009408
ORF Type ORF2
Protein Length 26
Nucleotide Length 81
Protein Sequence MRISMIGRWTVMSSRTQTSPMRVLRR
Nucleotide Sequence ATGCGGATCTCGATGATCGGGAGGTGGACGGTCATGTCCTCCAGGACACAGACATCCCCGATGAGGGTCCTGAGGAGATGA
CircID chr1:45008673|45009408
ORF Type ORF3
Protein Length 42
Nucleotide Length 126
Protein Sequence MLESHSNLGFQAGLGLEHALLPSPGQRAHSSMLTSLSFFRLS
Nucleotide Sequence CTGCTGGAGTCTCACTCAAACTTAGGCTTTCAAGCTGGGCTAGGCTTGGAACATGCCCTACTTCCCTCCCCAGGCCAGCGTGCTCACTCGTCAATGCTCACGTCACTCAGCTTCTTCAGGTTGTCC
CircID chr1:45008673|45009408
ORF Type ORF4
Protein Length 87
Nucleotide Length 261
Protein Sequence MTSEHAGLGREVGHVPSLAQLESLSLSETPAVSEGLRQEVSEVLHTHLLRTLIGDVCVLEDMTVHLPIIEIRIVECRDDGIDVRLRG
Nucleotide Sequence TTGACGAGTGAGCACGCTGGCCTGGGGAGGGAAGTAGGGCATGTTCCAAGCCTAGCCCAGCTTGAAAGCCTAAGTTTGAGTGAGACTCCAGCAGTCTCTGAAGGCCTGAGGCAGGAGGTATCTGAAGTGCTTCACACTCATCTCCTCAGGACCCTCATCGGGGATGTCTGTGTCCTGGAGGACATGACCGTCCACCTCCCGATCATCGAGATCCGCATCGTGGAGTGCCGAGATGATGGGATTGATGTTCGTCTCCGAGGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab