CircRNA Information

General Information
circRNA Basic Information
CircID chr1:45607558|45607706
Strand +
CircType exon
Host Gene ENSG00000132780.15;
Algorism CIRI2;
Sequence CTCTCCCTGCTTCTCCTGACCTCCTTTTTCTCTGCACTCTTCTTGGACATCAGTTCCAGAAACTGATTTTTCTTCCTCAGCATCTGGTACTTCCTGTTCTGGCTTCCCAGAAGTGACCTCAGCTTCATTCGGTCCTTCTGGTGCTGCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:45607558|45607706 hsa-miR-15a-5p 0 0 1
chr1:45607558|45607706 hsa-miR-15a-3p 0 0 1
chr1:45607558|45607706 hsa-miR-29a-5p 0 0 1
chr1:45607558|45607706 hsa-miR-29a-3p 0 0 1
chr1:45607558|45607706 hsa-miR-15b-5p 0 0 1
chr1:45607558|45607706 hsa-miR-15b-3p 0 0 1
chr1:45607558|45607706 hsa-miR-195-5p 0 0 1
chr1:45607558|45607706 hsa-miR-195-3p 0 0 1
chr1:45607558|45607706 hsa-miR-29c-5p 0 0 1
chr1:45607558|45607706 hsa-miR-29c-3p 0 0 1
chr1:45607558|45607706 hsa-miR-424-5p 0 0 1
chr1:45607558|45607706 hsa-miR-424-3p 0 0 1
chr1:45607558|45607706 hsa-miR-497-5p 0 0 1
chr1:45607558|45607706 hsa-miR-497-3p 0 0 1
chr1:45607558|45607706 hsa-miR-1299 0 1 1
chr1:45607558|45607706 hsa-miR-127-5p 0 0 1
chr1:45607558|45607706 hsa-miR-671-5p 0 1 1
chr1:45607558|45607706 hsa-miR-875-3p 0 0 1
chr1:45607558|45607706 hsa-miR-548c-3p 0 0 1
chr1:45607558|45607706 hsa-miR-16 0 0 1
chr1:45607558|45607706 hsa-miR-516b 0 0 1
chr1:45607558|45607706 hsa-miR-29b 0 0 1
chr1:45607558|45607706 hsa-miR-198 1 0 0
chr1:45607558|45607706 hsa-miR-1293 1 0 0
chr1:45607558|45607706 hsa-miR-3125 1 0 0
chr1:45607558|45607706 hsa-miR-3132 1 0 0
chr1:45607558|45607706 hsa-miR-3141 1 0 0
chr1:45607558|45607706 hsa-miR-3154 1 0 0
chr1:45607558|45607706 hsa-miR-3185 1 1 0
chr1:45607558|45607706 hsa-miR-378c 1 0 0
chr1:45607558|45607706 hsa-miR-4314 0 1 0
chr1:45607558|45607706 hsa-miR-3915 1 0 0
chr1:45607558|45607706 hsa-miR-3916 0 1 0
chr1:45607558|45607706 hsa-miR-3919 1 1 0
chr1:45607558|45607706 hsa-miR-4428 1 0 0
chr1:45607558|45607706 hsa-miR-4739 1 1 0
chr1:45607558|45607706 hsa-miR-4779 1 0 0
chr1:45607558|45607706 hsa-miR-5192 1 0 0
chr1:45607558|45607706 hsa-miR-5695 0 1 0
chr1:45607558|45607706 hsa-miR-5703 0 1 0
chr1:45607558|45607706 hsa-miR-6088 1 0 0
chr1:45607558|45607706 hsa-miR-6124 1 0 0
chr1:45607558|45607706 hsa-miR-6134 1 0 0
chr1:45607558|45607706 hsa-miR-6165 1 0 0
chr1:45607558|45607706 hsa-miR-12118 1 1 0
chr1:45607558|45607706 hsa-miR-4433b-3p 1 0 0
chr1:45607558|45607706 hsa-miR-504-3p 1 0 0
chr1:45607558|45607706 hsa-miR-3150a-3p 1 0 0
chr1:45607558|45607706 hsa-miR-6799-5p 1 0 0
chr1:45607558|45607706 hsa-miR-6510-5p 0 1 0
chr1:45607558|45607706 hsa-miR-4768-3p 0 1 0
chr1:45607558|45607706 hsa-miR-6089 1 0 0
chr1:45607558|45607706 hsa-miR-3192-5p 0 1 0
chr1:45607558|45607706 hsa-miR-4695-5p 1 0 0
chr1:45607558|45607706 hsa-miR-6730-5p 1 0 0
chr1:45607558|45607706 hsa-miR-7160-5p 1 1 0
chr1:45607558|45607706 hsa-miR-197-5p 1 0 0
chr1:45607558|45607706 hsa-miR-6732-5p 1 0 0
chr1:45607558|45607706 hsa-miR-6881-5p 1 0 0
chr1:45607558|45607706 hsa-miR-2467-3p 1 1 0
chr1:45607558|45607706 hsa-miR-204-3p 0 1 0
chr1:45607558|45607706 hsa-miR-4786-3p 0 1 0
chr1:45607558|45607706 hsa-miR-4640-5p 1 0 0
chr1:45607558|45607706 hsa-miR-877-5p 1 0 0
chr1:45607558|45607706 hsa-miR-4732-5p 1 0 0
chr1:45607558|45607706 hsa-miR-6847-5p 1 0 0
chr1:45607558|45607706 hsa-miR-3158-5p 1 0 0
chr1:45607558|45607706 hsa-miR-3065-3p 0 1 0
chr1:45607558|45607706 hsa-miR-4773 0 1 0
chr1:45607558|45607706 hsa-miR-6832-5p 1 1 0
chr1:45607558|45607706 hsa-miR-4699-5p 1 0 0
chr1:45607558|45607706 hsa-miR-589-3p 0 1 0
chr1:45607558|45607706 hsa-miR-5585-5p 0 1 0
chr1:45607558|45607706 hsa-miR-1207-5p 1 0 0
chr1:45607558|45607706 hsa-miR-1273h-5p 1 0 0
chr1:45607558|45607706 hsa-miR-6893-5p 1 0 0
chr1:45607558|45607706 hsa-miR-6754-5p 1 0 0
chr1:45607558|45607706 hsa-miR-6851-5p 1 0 0
chr1:45607558|45607706 hsa-miR-6797-5p 1 0 0
chr1:45607558|45607706 hsa-miR-6879-5p 1 0 0
chr1:45607558|45607706 hsa-miR-10526-3p 1 0 0
chr1:45607558|45607706 hsa-miR-328-5p 1 0 0
chr1:45607558|45607706 hsa-miR-6794-5p 1 0 0
chr1:45607558|45607706 hsa-miR-6858-5p 1 0 0
chr1:45607558|45607706 hsa-miR-4436b-3p 1 0 0
chr1:45607558|45607706 hsa-miR-6831-5p 1 0 0
chr1:45607558|45607706 hsa-miR-6845-5p 1 0 0
chr1:45607558|45607706 hsa-miR-6511b-5p 1 0 0
chr1:45607558|45607706 hsa-miR-4700-5p 0 1 0
chr1:45607558|45607706 hsa-miR-3173-3p 1 1 0
chr1:45607558|45607706 hsa-miR-4646-5p 0 1 0
chr1:45607558|45607706 hsa-miR-6891-5p 1 1 0
chr1:45607558|45607706 hsa-miR-4667-5p 0 1 0
chr1:45607558|45607706 hsa-miR-6859-5p 1 1 0
chr1:45607558|45607706 hsa-miR-370-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr1:45607558|45607706
ORF Type ORF1
Protein Length 39
Nucleotide Length 117
Protein Sequence MHSSWTSVPETDFSSSASGTSCSGFPEVTSASFGPSGAA
Nucleotide Sequence CTGCACTCTTCTTGGACATCAGTTCCAGAAACTGATTTTTCTTCCTCAGCATCTGGTACTTCCTGTTCTGGCTTCCCAGAAGTGACCTCAGCTTCATTCGGTCCTTCTGGTGCTGCT
CircID chr1:45607558|45607706
ORF Type ORF2
Protein Length 42
Nucleotide Length 126
Protein Sequence MKLRSLLGSQNRKYQMLRKKNQFLELMSKKSAEKKEVRRSRE
Nucleotide Sequence ATGAAGCTGAGGTCACTTCTGGGAAGCCAGAACAGGAAGTACCAGATGCTGAGGAAGAAAAATCAGTTTCTGGAACTGATGTCCAAGAAGAGTGCAGAGAAAAAGGAGGTCAGGAGAAGCAGGGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab