CircRNA Information

General Information
circRNA Basic Information
CircID chr1:46344934|46345078
Strand -
CircType exon
Host Gene ENSG00000117481.9;
Algorism CIRI2;
Sequence TGGTCAATAACTTTGCTGCCTGGGATCATGTAAGTGCTAAGCTGGAGCAGCTGAGTGCCAAGGATTTTGTGAATGAAGCCATCTCCCACTGGGAACTGCAGTCTGAGGGTGGCCAATCTGCAGCCCCATCCCCTGCCTCCTGGGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:46344934|46345078 hsa-miR-96-5p 0 0 1
chr1:46344934|46345078 hsa-miR-96-3p 0 0 1
chr1:46344934|46345078 hsa-miR-135b-5p 0 0 1
chr1:46344934|46345078 hsa-miR-135b-3p 0 0 1
chr1:46344934|46345078 hsa-miR-545-5p 0 0 1
chr1:46344934|46345078 hsa-miR-545-3p 0 0 1
chr1:46344934|46345078 hsa-miR-588 0 0 1
chr1:46344934|46345078 hsa-miR-650 1 0 1
chr1:46344934|46345078 hsa-miR-1271-5p 0 0 1
chr1:46344934|46345078 hsa-miR-1271-3p 0 0 1
chr1:46344934|46345078 hsa-miR-766-5p 0 0 1
chr1:46344934|46345078 hsa-miR-766-3p 0 0 1
chr1:46344934|46345078 hsa-miR-1298-5p 0 0 1
chr1:46344934|46345078 hsa-miR-1298-3p 0 0 1
chr1:46344934|46345078 hsa-miR-665 1 1 1
chr1:46344934|46345078 hsa-miR-940 0 0 1
chr1:46344934|46345078 hsa-miR-513b-5p 0 0 1
chr1:46344934|46345078 hsa-miR-513b-3p 0 0 1
chr1:46344934|46345078 hsa-miR-1827 0 0 1
chr1:46344934|46345078 hsa-miR-512-5p 0 1 1
chr1:46344934|46345078 hsa-miR-1207-3p 0 0 1
chr1:46344934|46345078 hsa-miR-1207-5p 1 0 1
chr1:46344934|46345078 hsa-miR-362-5p 0 1 1
chr1:46344934|46345078 hsa-miR-509-3-5p 0 1 1
chr1:46344934|46345078 hsa-miR-509-5p 0 1 1
chr1:46344934|46345078 hsa-miR-500 0 0 1
chr1:46344934|46345078 hsa-miR-135a 0 0 1
chr1:46344934|46345078 hsa-miR-663a 1 0 0
chr1:46344934|46345078 hsa-miR-762 1 0 0
chr1:46344934|46345078 hsa-miR-1183 1 1 0
chr1:46344934|46345078 hsa-miR-3196 1 0 0
chr1:46344934|46345078 hsa-miR-4418 0 1 0
chr1:46344934|46345078 hsa-miR-4494 0 1 0
chr1:46344934|46345078 hsa-miR-4675 0 1 0
chr1:46344934|46345078 hsa-miR-4692 0 1 0
chr1:46344934|46345078 hsa-miR-4741 1 0 0
chr1:46344934|46345078 hsa-miR-5787 1 0 0
chr1:46344934|46345078 hsa-miR-6132 1 0 0
chr1:46344934|46345078 hsa-miR-4433a-3p 1 0 0
chr1:46344934|46345078 hsa-miR-6765-5p 1 0 0
chr1:46344934|46345078 hsa-miR-212-5p 0 1 0
chr1:46344934|46345078 hsa-miR-6825-5p 1 0 0
chr1:46344934|46345078 hsa-miR-6894-5p 1 0 0
chr1:46344934|46345078 hsa-miR-6799-5p 1 0 0
chr1:46344934|46345078 hsa-miR-6089 1 0 0
chr1:46344934|46345078 hsa-miR-4695-5p 1 1 0
chr1:46344934|46345078 hsa-miR-8069 1 0 0
chr1:46344934|46345078 hsa-miR-6787-3p 0 1 0
chr1:46344934|46345078 hsa-miR-185-3p 1 0 0
chr1:46344934|46345078 hsa-miR-6732-5p 1 0 0
chr1:46344934|46345078 hsa-miR-30b-3p 1 1 0
chr1:46344934|46345078 hsa-miR-6786-5p 1 0 0
chr1:46344934|46345078 hsa-miR-4783-3p 1 0 0
chr1:46344934|46345078 hsa-miR-30c-2-3p 1 1 0
chr1:46344934|46345078 hsa-miR-1908-5p 1 0 0
chr1:46344934|46345078 hsa-miR-4787-5p 1 0 0
chr1:46344934|46345078 hsa-miR-149-3p 1 0 0
chr1:46344934|46345078 hsa-miR-3158-5p 0 1 0
chr1:46344934|46345078 hsa-miR-194-3p 0 1 0
chr1:46344934|46345078 hsa-miR-5010-5p 1 0 0
chr1:46344934|46345078 hsa-miR-500a-5p 0 1 0
chr1:46344934|46345078 hsa-miR-4632-3p 1 0 0
chr1:46344934|46345078 hsa-miR-7848-3p 0 1 0
chr1:46344934|46345078 hsa-miR-5587-3p 1 0 0
chr1:46344934|46345078 hsa-miR-5586-5p 0 1 0
chr1:46344934|46345078 hsa-miR-1233-5p 1 0 0
chr1:46344934|46345078 hsa-miR-1273h-5p 1 0 0
chr1:46344934|46345078 hsa-miR-4763-3p 1 1 0
chr1:46344934|46345078 hsa-miR-6787-5p 1 0 0
chr1:46344934|46345078 hsa-miR-6893-5p 0 1 0
chr1:46344934|46345078 hsa-miR-6743-5p 1 0 0
chr1:46344934|46345078 hsa-miR-6756-5p 1 1 0
chr1:46344934|46345078 hsa-miR-6803-5p 1 0 0
chr1:46344934|46345078 hsa-miR-6813-5p 1 1 0
chr1:46344934|46345078 hsa-miR-6851-5p 1 0 0
chr1:46344934|46345078 hsa-miR-1249-5p 1 0 0
chr1:46344934|46345078 hsa-miR-6722-3p 1 1 0
chr1:46344934|46345078 hsa-miR-6779-5p 1 0 0
chr1:46344934|46345078 hsa-miR-6808-5p 1 1 0
chr1:46344934|46345078 hsa-miR-4728-5p 1 0 0
chr1:46344934|46345078 hsa-miR-5196-5p 1 0 0
chr1:46344934|46345078 hsa-miR-1909-3p 1 1 0
chr1:46344934|46345078 hsa-miR-6846-5p 1 0 0
chr1:46344934|46345078 hsa-miR-6848-5p 1 1 0
chr1:46344934|46345078 hsa-miR-6511a-5p 1 0 0
chr1:46344934|46345078 hsa-miR-30c-1-3p 1 1 0
chr1:46344934|46345078 hsa-miR-4482-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr1:46344934|46345078
ORF Type ORF1
Protein Length 34
Nucleotide Length 102
Protein Sequence MEQLSAKDFVNEAISHWELQSEGGQSAAPSPASW
Nucleotide Sequence CTGGAGCAGCTGAGTGCCAAGGATTTTGTGAATGAAGCCATCTCCCACTGGGAACTGCAGTCTGAGGGTGGCCAATCTGCAGCCCCATCCCCTGCCTCCTGG
CircID chr1:46344934|46345078
ORF Type ORF2
Protein Length 30
Nucleotide Length 93
Protein Sequence MGLQIGHPQTAVPSGRWLHSQNPWHSAAPA
Nucleotide Sequence ATGGGGCTGCAGATTGGCCACCCTCAGACTGCAGTTCCCAGTGGGAGATGGCTTCATTCACAAAATCCTTGGCACTCAGCTGCTCCAGCTTAG
CircID chr1:46344934|46345078
ORF Type ORF3
Protein Length 38
Nucleotide Length 114
Protein Sequence MATLRLQFPVGDGFIHKILGTQLLQLSTYMIPGSKVID
Nucleotide Sequence TTGGCCACCCTCAGACTGCAGTTCCCAGTGGGAGATGGCTTCATTCACAAAATCCTTGGCACTCAGCTGCTCCAGCTTAGCACTTACATGATCCCAGGCAGCAAAGTTATTGAC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab