CircRNA Information

General Information
circRNA Basic Information
CircID chr1:46359266|46359502
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence AAACAAACAAATAAACTGGGAATTTAGTTTTACTGGTTGCTGTTTCTGCTGACTTGCTCAAGGAGTCGTGTTTCCTTTTAAGTTTTGTGGTTATTTTTGTGTCCTGTAGTAAGCTTTTTTTTTTCTTTTTCGAGGCGAAGTCTCACTTTGTTGCCAAAGGCTGGAGTGCAGTGGCGCGGTCTTGGCTTACTGCTACCTCCGCCTCCCAGGTTCAAGCAATTCTCCCACCTCAGCCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:46359266|46359502 hsa-let-7b-5p 0 0 1
chr1:46359266|46359502 hsa-let-7b-3p 0 0 1
chr1:46359266|46359502 hsa-let-7c-5p 0 0 1
chr1:46359266|46359502 hsa-let-7c-3p 0 0 1
chr1:46359266|46359502 hsa-let-7d-5p 0 0 1
chr1:46359266|46359502 hsa-let-7d-3p 0 0 1
chr1:46359266|46359502 hsa-let-7e-5p 0 0 1
chr1:46359266|46359502 hsa-let-7e-3p 0 0 1
chr1:46359266|46359502 hsa-miR-96-5p 0 0 1
chr1:46359266|46359502 hsa-miR-96-3p 0 0 1
chr1:46359266|46359502 hsa-miR-98-5p 0 0 1
chr1:46359266|46359502 hsa-miR-98-3p 0 0 1
chr1:46359266|46359502 hsa-miR-182-5p 0 0 1
chr1:46359266|46359502 hsa-miR-182-3p 0 0 1
chr1:46359266|46359502 hsa-miR-214-5p 0 0 1
chr1:46359266|46359502 hsa-miR-214-3p 0 0 1
chr1:46359266|46359502 hsa-let-7g-5p 0 0 1
chr1:46359266|46359502 hsa-let-7g-3p 0 0 1
chr1:46359266|46359502 hsa-let-7i-5p 0 0 1
chr1:46359266|46359502 hsa-let-7i-3p 0 0 1
chr1:46359266|46359502 hsa-miR-520g-5p 0 0 1
chr1:46359266|46359502 hsa-miR-520g-3p 0 0 1
chr1:46359266|46359502 hsa-miR-520h 0 1 1
chr1:46359266|46359502 hsa-miR-658 0 1 1
chr1:46359266|46359502 hsa-miR-1323 0 0 1
chr1:46359266|46359502 hsa-miR-1271-5p 0 0 1
chr1:46359266|46359502 hsa-miR-1271-3p 0 0 1
chr1:46359266|46359502 hsa-miR-766-5p 0 0 1
chr1:46359266|46359502 hsa-miR-766-3p 0 0 1
chr1:46359266|46359502 hsa-miR-922 0 1 1
chr1:46359266|46359502 hsa-miR-548e-5p 0 0 1
chr1:46359266|46359502 hsa-miR-548e-3p 0 0 1
chr1:46359266|46359502 hsa-miR-548o-3p 0 0 1
chr1:46359266|46359502 hsa-miR-302f 0 0 1
chr1:46359266|46359502 hsa-miR-1281 0 0 1
chr1:46359266|46359502 hsa-miR-1197 0 0 1
chr1:46359266|46359502 hsa-miR-548o 0 0 1
chr1:46359266|46359502 hsa-miR-485-5p 0 1 1
chr1:46359266|46359502 hsa-miR-490-3p 0 0 1
chr1:46359266|46359502 hsa-miR-508-5p 0 0 1
chr1:46359266|46359502 hsa-miR-548a-3p 0 0 1
chr1:46359266|46359502 hsa-miR-548f 0 0 1
chr1:46359266|46359502 hsa-let-7a 0 0 1
chr1:46359266|46359502 hsa-let-7f 0 0 1
chr1:46359266|46359502 hsa-miR-3188 1 0 0
chr1:46359266|46359502 hsa-miR-4291 1 1 0
chr1:46359266|46359502 hsa-miR-3929 0 1 0
chr1:46359266|46359502 hsa-miR-3937 0 1 0
chr1:46359266|46359502 hsa-miR-4430 1 0 0
chr1:46359266|46359502 hsa-miR-4436a 0 1 0
chr1:46359266|46359502 hsa-miR-4463 1 0 0
chr1:46359266|46359502 hsa-miR-4478 1 1 0
chr1:46359266|46359502 hsa-miR-3689c 0 1 0
chr1:46359266|46359502 hsa-miR-4496 0 1 0
chr1:46359266|46359502 hsa-miR-4500 0 1 0
chr1:46359266|46359502 hsa-miR-4505 1 0 0
chr1:46359266|46359502 hsa-miR-4651 1 0 0
chr1:46359266|46359502 hsa-miR-4654 1 0 0
chr1:46359266|46359502 hsa-miR-4656 1 0 0
chr1:46359266|46359502 hsa-miR-4739 1 0 0
chr1:46359266|46359502 hsa-miR-4801 0 1 0
chr1:46359266|46359502 hsa-miR-5787 1 0 0
chr1:46359266|46359502 hsa-miR-6134 0 1 0
chr1:46359266|46359502 hsa-miR-7703 0 1 0
chr1:46359266|46359502 hsa-miR-8055 0 1 0
chr1:46359266|46359502 hsa-miR-8085 1 0 0
chr1:46359266|46359502 hsa-miR-12114 1 0 0
chr1:46359266|46359502 hsa-miR-12120 1 0 0
chr1:46359266|46359502 hsa-miR-196a-3p 0 1 0
chr1:46359266|46359502 hsa-miR-6765-5p 1 0 0
chr1:46359266|46359502 hsa-miR-7106-5p 1 0 0
chr1:46359266|46359502 hsa-miR-6894-5p 1 0 0
chr1:46359266|46359502 hsa-miR-6720-5p 0 1 0
chr1:46359266|46359502 hsa-miR-7851-3p 0 1 0
chr1:46359266|46359502 hsa-miR-3192-5p 1 1 0
chr1:46359266|46359502 hsa-miR-7847-3p 1 0 0
chr1:46359266|46359502 hsa-miR-6746-5p 1 0 0
chr1:46359266|46359502 hsa-miR-7160-5p 0 1 0
chr1:46359266|46359502 hsa-miR-6760-5p 1 0 0
chr1:46359266|46359502 hsa-miR-6782-5p 1 0 0
chr1:46359266|46359502 hsa-miR-30b-3p 0 1 0
chr1:46359266|46359502 hsa-miR-6802-5p 1 0 0
chr1:46359266|46359502 hsa-miR-6878-5p 1 1 0
chr1:46359266|46359502 hsa-miR-7162-3p 0 1 0
chr1:46359266|46359502 hsa-let-7f-5p 0 1 0
chr1:46359266|46359502 hsa-let-7a-5p 0 1 0
chr1:46359266|46359502 hsa-miR-548ao-3p 0 1 0
chr1:46359266|46359502 hsa-miR-1233-5p 1 0 0
chr1:46359266|46359502 hsa-miR-1273h-5p 0 1 0
chr1:46359266|46359502 hsa-miR-3689b-3p 0 1 0
chr1:46359266|46359502 hsa-miR-4763-3p 1 0 0
chr1:46359266|46359502 hsa-miR-6769b-5p 1 0 0
chr1:46359266|46359502 hsa-miR-6778-5p 1 1 0
chr1:46359266|46359502 hsa-miR-6787-5p 1 1 0
chr1:46359266|46359502 hsa-miR-6812-5p 1 0 0
chr1:46359266|46359502 hsa-miR-6756-5p 1 0 0
chr1:46359266|46359502 hsa-miR-6769a-5p 1 0 0
chr1:46359266|46359502 hsa-miR-6819-5p 1 0 0
chr1:46359266|46359502 hsa-miR-6851-5p 0 1 0
chr1:46359266|46359502 hsa-miR-10401-5p 1 0 0
chr1:46359266|46359502 hsa-miR-1249-5p 1 0 0
chr1:46359266|46359502 hsa-miR-6779-5p 1 0 0
chr1:46359266|46359502 hsa-miR-6780a-5p 0 1 0
chr1:46359266|46359502 hsa-miR-6788-5p 0 1 0
chr1:46359266|46359502 hsa-miR-4728-5p 1 0 0
chr1:46359266|46359502 hsa-miR-1237-5p 1 0 0
chr1:46359266|46359502 hsa-miR-328-5p 1 0 0
chr1:46359266|46359502 hsa-miR-3689a-3p 0 1 0
chr1:46359266|46359502 hsa-miR-6831-5p 1 0 0
chr1:46359266|46359502 hsa-miR-6885-5p 1 0 0
chr1:46359266|46359502 hsa-miR-30c-1-3p 0 1 0
chr1:46359266|46359502 hsa-miR-6884-5p 0 1 0
chr1:46359266|46359502 hsa-miR-6807-3p 0 1 0
chr1:46359266|46359502 hsa-miR-6864-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr1:46359266|46359502
ORF Type ORF1
Protein Length 51
Nucleotide Length 153
Protein Sequence MWLFLCPVVSFFFSFSRRSLTLLPKAGVQWRGLGLLLPPPPRFKQFSHLSL
Nucleotide Sequence TTGTGGTTATTTTTGTGTCCTGTAGTAAGCTTTTTTTTTTCTTTTTCGAGGCGAAGTCTCACTTTGTTGCCAAAGGCTGGAGTGCAGTGGCGCGGTCTTGGCTTACTGCTACCTCCGCCTCCCAGGTTCAAGCAATTCTCCCACCTCAGCCTC
CircID chr1:46359266|46359502
ORF Type ORF2
Protein Length 25
Nucleotide Length 75
Protein Sequence MECSGAVLAYCYLRLPGSSNSPTSA
Nucleotide Sequence CTGGAGTGCAGTGGCGCGGTCTTGGCTTACTGCTACCTCCGCCTCCCAGGTTCAAGCAATTCTCCCACCTCAGCC
CircID chr1:46359266|46359502
ORF Type ORF3
Protein Length 68
Nucleotide Length 204
Protein Sequence MVAVSADLLKESCFLLSFVVIFVSCSKLFFFFFEAKSHFVAKGWSAVARSWLTATSASQVQAILPPQP
Nucleotide Sequence CTGGTTGCTGTTTCTGCTGACTTGCTCAAGGAGTCGTGTTTCCTTTTAAGTTTTGTGGTTATTTTTGTGTCCTGTAGTAAGCTTTTTTTTTTCTTTTTCGAGGCGAAGTCTCACTTTGTTGCCAAAGGCTGGAGTGCAGTGGCGCGGTCTTGGCTTACTGCTACCTCCGCCTCCCAGGTTCAAGCAATTCTCCCACCTCAGCCT
CircID chr1:46359266|46359502
ORF Type ORF4
Protein Length 26
Nucleotide Length 81
Protein Sequence MHSSLWQQSETSPRKRKKKAYYRTQK
Nucleotide Sequence CTGCACTCCAGCCTTTGGCAACAAAGTGAGACTTCGCCTCGAAAAAGAAAAAAAAAAGCTTACTACAGGACACAAAAATAA
CircID chr1:46359266|46359502
ORF Type ORF5
Protein Length 51
Nucleotide Length 156
Protein Sequence MRWENCLNLGGGGSSKPRPRHCTPAFGNKVRLRLEKEKKKLTTGHKNNHKT
Nucleotide Sequence CTGAGGTGGGAGAATTGCTTGAACCTGGGAGGCGGAGGTAGCAGTAAGCCAAGACCGCGCCACTGCACTCCAGCCTTTGGCAACAAAGTGAGACTTCGCCTCGAAAAAGAAAAAAAAAAGCTTACTACAGGACACAAAAATAACCACAAAACTTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab