CircRNA Information

General Information
circRNA Basic Information
CircID chr1:51461091|51465326
Strand -
CircType exon
Host Gene ENSG00000085832.16;
Algorism find_circ;CIRI2;DCC;
Sequence CATGATACCAGTAGTCCTTTGCTAATCAGTGGAACCTCTGCAGCTGAGCTCCCATGGGCTGTAAAATTGGAAAATAAAGATGGTGTTCCAGCTACAAAAAGAATGGGCAACACCAGACTCTTGGCCTGAAGATAAGGCCAAATATGATGCAATATTTGATAGTTTAAGCCCAGTGAATGGATTTCTGTCTGGTGATAAAGTGAAACCAGTGTTGCTCAACTCTAAGTTACCTGTGGATATCCTTGGAAGAGTTTGGGAGTTGAGTGATATTGACCATGATGGAATGCTTGACAGAGATGAGTTTGCAGTT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:51461091|51465326 hsa-miR-17-5p 0 0 1
chr1:51461091|51465326 hsa-miR-17-3p 0 0 1
chr1:51461091|51465326 hsa-miR-20a-5p 0 0 1
chr1:51461091|51465326 hsa-miR-20a-3p 0 0 1
chr1:51461091|51465326 hsa-miR-93-5p 0 0 1
chr1:51461091|51465326 hsa-miR-93-3p 0 0 1
chr1:51461091|51465326 hsa-miR-106a-5p 0 0 1
chr1:51461091|51465326 hsa-miR-106a-3p 0 0 1
chr1:51461091|51465326 hsa-miR-106b-5p 0 0 1
chr1:51461091|51465326 hsa-miR-106b-3p 0 0 1
chr1:51461091|51465326 hsa-miR-20b-5p 0 0 1
chr1:51461091|51465326 hsa-miR-20b-3p 0 0 1
chr1:51461091|51465326 hsa-miR-519d-5p 0 0 1
chr1:51461091|51465326 hsa-miR-519d-3p 0 0 1
chr1:51461091|51465326 hsa-miR-618 0 0 1
chr1:51461091|51465326 hsa-miR-1301-5p 0 0 1
chr1:51461091|51465326 hsa-miR-1301-3p 0 0 1
chr1:51461091|51465326 hsa-miR-1178-5p 0 0 1
chr1:51461091|51465326 hsa-miR-1178-3p 0 0 1
chr1:51461091|51465326 hsa-miR-1231 0 0 1
chr1:51461091|51465326 hsa-miR-1205 0 0 1
chr1:51461091|51465326 hsa-miR-1290 0 0 1
chr1:51461091|51465326 hsa-miR-1246 0 1 1
chr1:51461091|51465326 hsa-miR-1257 0 1 1
chr1:51461091|51465326 hsa-miR-1272 0 0 1
chr1:51461091|51465326 hsa-miR-1322 0 0 1
chr1:51461091|51465326 hsa-miR-196a-3p 0 1 1
chr1:51461091|51465326 hsa-miR-142-5p 0 0 1
chr1:51461091|51465326 hsa-miR-199a-5p 0 0 1
chr1:51461091|51465326 hsa-miR-1184 0 1 1
chr1:51461091|51465326 hsa-miR-501-5p 0 0 1
chr1:51461091|51465326 hsa-miR-199b-5p 0 0 1
chr1:51461091|51465326 hsa-miR-199b-3p 0 0 1
chr1:51461091|51465326 hsa-miR-199a-3p 0 0 1
chr1:51461091|51465326 hsa-miR-362-5p 0 1 1
chr1:51461091|51465326 hsa-miR-876-5p 0 0 1
chr1:51461091|51465326 hsa-miR-7 0 0 1
chr1:51461091|51465326 hsa-miR-762 1 0 0
chr1:51461091|51465326 hsa-miR-3911 1 0 0
chr1:51461091|51465326 hsa-miR-4656 1 0 0
chr1:51461091|51465326 hsa-miR-4663 0 1 0
chr1:51461091|51465326 hsa-miR-4675 0 1 0
chr1:51461091|51465326 hsa-miR-4741 1 0 0
chr1:51461091|51465326 hsa-miR-4752 0 1 0
chr1:51461091|51465326 hsa-miR-5047 0 1 0
chr1:51461091|51465326 hsa-miR-7978 1 0 0
chr1:51461091|51465326 hsa-miR-12115 1 0 0
chr1:51461091|51465326 hsa-miR-7160-5p 1 0 0
chr1:51461091|51465326 hsa-miR-3928-3p 1 0 0
chr1:51461091|51465326 hsa-miR-1226-5p 1 0 0
chr1:51461091|51465326 hsa-miR-6811-3p 1 0 0
chr1:51461091|51465326 hsa-miR-6769a-5p 1 0 0
chr1:51461091|51465326 hsa-miR-4758-5p 1 0 0
chr1:51461091|51465326 hsa-miR-548ah-5p 0 1 0
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr1:51461091|51465326
ORF Type ORF1
Protein Length 77
Nucleotide Length 231
Protein Sequence MVFQLQKEWATPDSWPEDKAKYDAIFDSLSPVNGFLSGDKVKPVLLNSKLPVDILGRVWELSDIDHDGMLDRDEFAV
Nucleotide Sequence ATGGTGTTCCAGCTACAAAAAGAATGGGCAACACCAGACTCTTGGCCTGAAGATAAGGCCAAATATGATGCAATATTTGATAGTTTAAGCCCAGTGAATGGATTTCTGTCTGGTGATAAAGTGAAACCAGTGTTGCTCAACTCTAAGTTACCTGTGGATATCCTTGGAAGAGTTTGGGAGTTGAGTGATATTGACCATGATGGAATGCTTGACAGAGATGAGTTTGCAGTT
CircID chr1:51461091|51465326
ORF Type ORF2
Protein Length 66
Nucleotide Length 198
Protein Sequence LSNTGFTLSPDRNPFTGLKLSNIASYLALSSGQESGVAHSFCSWNTIFIFQFYSPWELSCRGSTD*
Nucleotide Sequence TTGAGCAACACTGGTTTCACTTTATCACCAGACAGAAATCCATTCACTGGGCTTAAACTATCAAATATTGCATCATATTTGGCCTTATCTTCAGGCCAAGAGTCTGGTGTTGCCCATTCTTTTTGTAGCTGGAACACCATCTTTATTTTCCAATTTTACAGCCCATGGGAGCTCAGCTGCAGAGGTTCCACTGATTAG
CircID chr1:51461091|51465326
ORF Type ORF1
Protein Length 53
Nucleotide Length 159
Protein Sequence MSNTGFTLSPDRNPFTGLKLSNIASYLALSSGFTAHGSSAAEVPLISKGLLVS
Nucleotide Sequence TTGAGCAACACTGGTTTCACTTTATCACCAGACAGAAATCCATTCACTGGGCTTAAACTATCAAATATTGCATCATATTTGGCCTTATCTTCAGGTTTTACAGCCCATGGGAGCTCAGCTGCAGAGGTTCCACTGATTAGCAAAGGACTACTGGTATCA
CircID chr1:51461091|51465326
ORF Type ORF2
Protein Length 41
Nucleotide Length 126
Protein Sequence MVSLYHQTEIHSLGLNYQILHHIWPYLQVLQPMGAQLQRFH
Nucleotide Sequence CTGGTTTCACTTTATCACCAGACAGAAATCCATTCACTGGGCTTAAACTATCAAATATTGCATCATATTTGGCCTTATCTTCAGGTTTTACAGCCCATGGGAGCTCAGCTGCAGAGGTTCCACTGA
CircID chr1:51461091|51465326
ORF Type ORF3
Protein Length 60
Nucleotide Length 180
Protein Sequence MLISGTSAAELPWAVKPEDKAKYDAIFDSLSPVNGFLSGDKVKPVLLNSKLPVDILGRAV
Nucleotide Sequence TTGCTAATCAGTGGAACCTCTGCAGCTGAGCTCCCATGGGCTGTAAAACCTGAAGATAAGGCCAAATATGATGCAATATTTGATAGTTTAAGCCCAGTGAATGGATTTCTGTCTGGTGATAAAGTGAAACCAGTGTTGCTCAACTCTAAGTTACCTGTGGATATCCTTGGAAGAGCAGTT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr1:51461091|51465326 U2AF2 14 23 0
chr1:51461091|51465326 MOV10 0 0 1
chr1:51461091|51465326 ELAVL1 5 7 1
chr1:51461091|51465326 ELAVL3 0 2 0
chr1:51461091|51465326 SF3B4 2 0 0
chr1:51461091|51465326 PRPF8 0 0 2
chr1:51461091|51465326 UPF1 0 2 0
chr1:51461091|51465326 TAF15 0 1 0
chr1:51461091|51465326 FMR1 0 1 2
chr1:51461091|51465326 TROVE2 0 2 0
chr1:51461091|51465326 FUS 1 1 0
chr1:51461091|51465326 SRSF1 0 0 4
chr1:51461091|51465326 NOP58 1 1 0
chr1:51461091|51465326 ADAR 1 0 0
chr1:51461091|51465326 KHSRP 2 0 0
chr1:51461091|51465326 SRSF9 0 0 2
chr1:51461091|51465326 DDX54 0 1 4
chr1:51461091|51465326 RBM10 2 2 0
chr1:51461091|51465326 HNRNPC 1 1 0
chr1:51461091|51465326 TRA2A 0 0 1
chr1:51461091|51465326 ZC3H7B 0 0 1
chr1:51461091|51465326 SMNDC1 1 0 0
chr1:51461091|51465326 LIN28B 1 1 6
chr1:51461091|51465326 FXR1 0 0 1
chr1:51461091|51465326 FXR2 0 0 1
chr1:51461091|51465326 IGF2BP1 0 0 2
chr1:51461091|51465326 IGF2BP2 2 1 2
chr1:51461091|51465326 TARDBP 0 1 0
chr1:51461091|51465326 BUD13 0 0 1
chr1:51461091|51465326 RBM47 0 0 1
chr1:51461091|51465326 CSTF2T 0 0 1
chr1:51461091|51465326 RBM22 0 2 0
chr1:51461091|51465326 TIAL1 0 2 0
chr1:51461091|51465326 DKC1 1 0 0
chr1:51461091|51465326 FBL 0 1 0
chr1:51461091|51465326 EIF4A3 1 2 4
chr1:51461091|51465326 AGO2 0 0 2
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab