CircRNA Information

General Information
circRNA Basic Information
CircID chr1:51818066|51821555
Strand -
CircType exon
Host Gene ENSG00000078618.20;
Algorism find_circ;CIRI2;DCC;
Sequence AAACACTGGATACTTTGGAAAAGTGGGTGACTGAAATCTTCTCTCAGATACCAAACAATGGGTTACCCAGACCAAACTTTGGCCATTTAACGGATCCATTTGACACACCAGCATTTAACAAACTTTATAGAGTTGTTCCAATCAGAAAAATTCATGCTCTGACCATCACATGGGCACTTCCTCCTCAACAGCAACATTACAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:51818066|51821555 hsa-miR-141-5p 0 0 1
chr1:51818066|51821555 hsa-miR-141-3p 0 0 1
chr1:51818066|51821555 hsa-miR-191-5p 0 0 1
chr1:51818066|51821555 hsa-miR-191-3p 0 0 1
chr1:51818066|51821555 hsa-miR-200a-5p 0 0 1
chr1:51818066|51821555 hsa-miR-200a-3p 0 0 1
chr1:51818066|51821555 hsa-miR-495-5p 0 0 1
chr1:51818066|51821555 hsa-miR-495-3p 0 0 1
chr1:51818066|51821555 hsa-miR-588 0 0 1
chr1:51818066|51821555 hsa-miR-591 0 0 1
chr1:51818066|51821555 hsa-miR-634 0 0 1
chr1:51818066|51821555 hsa-miR-421 0 0 1
chr1:51818066|51821555 hsa-miR-1226-5p 0 0 1
chr1:51818066|51821555 hsa-miR-1226-3p 0 0 1
chr1:51818066|51821555 hsa-miR-127-3p 0 1 1
chr1:51818066|51821555 hsa-miR-409-5p 0 1 1
chr1:51818066|51821555 hsa-miR-338-3p 0 0 1
chr1:51818066|51821555 hsa-miR-362-3p 0 0 1
chr1:51818066|51821555 hsa-miR-323-3p 0 0 1
chr1:51818066|51821555 hsa-miR-514 0 0 1
chr1:51818066|51821555 hsa-miR-329 0 0 1
chr1:51818066|51821555 hsa-miR-5193 0 1 0
chr1:51818066|51821555 hsa-miR-6884-3p 0 1 0
chr1:51818066|51821555 hsa-miR-4778-3p 1 0 0
chr1:51818066|51821555 hsa-miR-1912-3p 0 1 0
chr1:51818066|51821555 hsa-miR-301a-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr1:51818066|51821555
ORF Type ORF1
Protein Length 38
Nucleotide Length 114
Protein Sequence MLVCQMDPLNGQSLVWVTHCLVSERRFQSPTFPKYPVF
Nucleotide Sequence ATGCTGGTGTGTCAAATGGATCCGTTAAATGGCCAAAGTTTGGTCTGGGTAACCCATTGTTTGGTATCTGAGAGAAGATTTCAGTCACCCACTTTTCCAAAGTATCCAGTGTTT
CircID chr1:51818066|51821555
ORF Type ORF2
Protein Length 37
Nucleotide Length 111
Protein Sequence MLLLRRKCPCDGQSMNFSDWNNSIKFVKCWCVKWIR*
Nucleotide Sequence ATGTTGCTGTTGAGGAGGAAGTGCCCATGTGATGGTCAGAGCATGAATTTTTCTGATTGGAACAACTCTATAAAGTTTGTTAAATGCTGGTGTGTCAAATGGATCCGTTAA
CircID chr1:51818066|51821555
ORF Type ORF3
Protein Length 62
Nucleotide Length 186
Protein Sequence LEKWVTEIFSQIPNNGLPRPNFGHLTDPFDTPAFNKLYRVVPIRKIHALTITWALPPQQQHY
Nucleotide Sequence TTGGAAAAGTGGGTGACTGAAATCTTCTCTCAGATACCAAACAATGGGTTACCCAGACCAAACTTTGGCCATTTAACGGATCCATTTGACACACCAGCATTTAACAAACTTTATAGAGTTGTTCCAATCAGAAAAATTCATGCTCTGACCATCACATGGGCACTTCCTCCTCAACAGCAACATTAC
CircID chr1:51818066|51821555
ORF Type ORF1
Protein Length 36
Nucleotide Length 111
Protein Sequence MLLLRRKCPCDGQSMNFSDWNNSIKFVKCWCVKWIR
Nucleotide Sequence ATGTTGCTGTTGAGGAGGAAGTGCCCATGTGATGGTCAGAGCATGAATTTTTCTGATTGGAACAACTCTATAAAGTTTGTTAAATGCTGGTGTGTCAAATGGATCCGTTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr1:51818066|51821555 NOP56 2 2 0
chr1:51818066|51821555 ELAVL1 3 1 2
chr1:51818066|51821555 PRPF8 1 1 1
chr1:51818066|51821555 FMR1 0 1 1
chr1:51818066|51821555 NUDT21 0 1 0
chr1:51818066|51821555 CSTF2 0 1 0
chr1:51818066|51821555 FUS 0 2 1
chr1:51818066|51821555 DGCR8 0 0 1
chr1:51818066|51821555 SRSF1 0 0 1
chr1:51818066|51821555 NOP58 2 2 3
chr1:51818066|51821555 U2AF1 1 0 0
chr1:51818066|51821555 U2AF2 14 5 2
chr1:51818066|51821555 SRSF9 0 1 0
chr1:51818066|51821555 DDX54 0 2 5
chr1:51818066|51821555 RBM10 3 0 0
chr1:51818066|51821555 FIP1L1 1 0 0
chr1:51818066|51821555 HNRNPC 4 2 0
chr1:51818066|51821555 HNRNPD 0 2 0
chr1:51818066|51821555 TRA2A 0 0 1
chr1:51818066|51821555 DDX3X 0 0 1
chr1:51818066|51821555 HNRNPA1 1 2 0
chr1:51818066|51821555 FXR1 0 0 4
chr1:51818066|51821555 FXR2 0 1 0
chr1:51818066|51821555 SND1 1 0 1
chr1:51818066|51821555 IGF2BP1 0 4 7
chr1:51818066|51821555 IGF2BP3 0 1 4
chr1:51818066|51821555 IGF2BP2 2 1 9
chr1:51818066|51821555 FTO 1 0 0
chr1:51818066|51821555 TARDBP 0 1 0
chr1:51818066|51821555 BUD13 0 0 1
chr1:51818066|51821555 RBM47 0 1 2
chr1:51818066|51821555 EIF4G2 0 0 1
chr1:51818066|51821555 CSTF2T 0 1 0
chr1:51818066|51821555 TIA1 1 0 0
chr1:51818066|51821555 FBL 2 1 3
chr1:51818066|51821555 EWSR1 0 1 0
chr1:51818066|51821555 EIF4A3 2 1 5
chr1:51818066|51821555 AGO2 0 0 2
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab