CircRNA Information

General Information
circRNA Basic Information
CircID chr1:52337799|52337934
Strand +
CircType exon
Host Gene ENSG00000157077.13;
Algorism CIRI2;
Sequence CCCTTGCTAACGTTCTTGTCATCATCCACCCACTGGATGTGGATGTGCTCCTGGGGTTCCTCCGCGTCCGCCTTCCCACAGGTGATGGTGAAGTCCTTCATCTCTCGCAGTGCCTGCCTCAAGGAATCCATGTTCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:52337799|52337934 hsa-miR-197-5p 0 0 1
chr1:52337799|52337934 hsa-miR-197-3p 0 0 1
chr1:52337799|52337934 hsa-miR-143-5p 0 0 1
chr1:52337799|52337934 hsa-miR-143-3p 0 0 1
chr1:52337799|52337934 hsa-miR-412-5p 0 0 1
chr1:52337799|52337934 hsa-miR-412-3p 0 0 1
chr1:52337799|52337934 hsa-miR-658 0 0 1
chr1:52337799|52337934 hsa-miR-665 0 0 1
chr1:52337799|52337934 hsa-miR-940 0 0 1
chr1:52337799|52337934 hsa-miR-1293 0 0 1
chr1:52337799|52337934 hsa-miR-1304-5p 0 0 1
chr1:52337799|52337934 hsa-miR-1304-3p 0 0 1
chr1:52337799|52337934 hsa-miR-1246 0 1 1
chr1:52337799|52337934 hsa-miR-1255a 0 0 1
chr1:52337799|52337934 hsa-miR-1272 0 0 1
chr1:52337799|52337934 hsa-miR-1252-5p 0 0 1
chr1:52337799|52337934 hsa-miR-1252-3p 0 0 1
chr1:52337799|52337934 hsa-miR-1825 0 0 1
chr1:52337799|52337934 hsa-miR-1827 0 0 1
chr1:52337799|52337934 hsa-miR-199a-5p 0 0 1
chr1:52337799|52337934 hsa-miR-502-5p 0 0 1
chr1:52337799|52337934 hsa-miR-490-5p 0 1 1
chr1:52337799|52337934 hsa-miR-199b-5p 0 0 1
chr1:52337799|52337934 hsa-miR-1255b 0 0 1
chr1:52337799|52337934 hsa-miR-4739 1 1 0
chr1:52337799|52337934 hsa-miR-6125 1 1 0
chr1:52337799|52337934 hsa-miR-6745 0 1 0
chr1:52337799|52337934 hsa-miR-6765-5p 1 0 0
chr1:52337799|52337934 hsa-miR-8071 1 0 0
chr1:52337799|52337934 hsa-miR-6089 1 0 0
chr1:52337799|52337934 hsa-miR-3928-3p 0 1 0
chr1:52337799|52337934 hsa-miR-6727-5p 1 0 0
chr1:52337799|52337934 hsa-miR-6748-5p 1 1 0
chr1:52337799|52337934 hsa-miR-204-3p 1 0 0
chr1:52337799|52337934 hsa-miR-3691-5p 0 1 0
chr1:52337799|52337934 hsa-miR-1908-5p 1 0 0
chr1:52337799|52337934 hsa-miR-652-5p 0 1 0
chr1:52337799|52337934 hsa-miR-181b-5p 0 1 0
chr1:52337799|52337934 hsa-miR-526b-5p 0 1 0
chr1:52337799|52337934 hsa-miR-1207-5p 1 0 0
chr1:52337799|52337934 hsa-miR-1233-5p 1 1 0
chr1:52337799|52337934 hsa-miR-4763-3p 1 0 0
chr1:52337799|52337934 hsa-miR-6769b-5p 1 1 0
chr1:52337799|52337934 hsa-miR-6778-5p 1 0 0
chr1:52337799|52337934 hsa-miR-6893-5p 0 1 0
chr1:52337799|52337934 hsa-miR-6756-5p 1 0 0
chr1:52337799|52337934 hsa-miR-10401-5p 1 1 0
chr1:52337799|52337934 hsa-miR-6808-5p 0 1 0
chr1:52337799|52337934 hsa-miR-6879-5p 1 0 0
chr1:52337799|52337934 hsa-miR-6754-3p 0 1 0
chr1:52337799|52337934 hsa-miR-5196-5p 1 1 0
chr1:52337799|52337934 hsa-miR-328-5p 1 0 0
chr1:52337799|52337934 hsa-miR-6885-5p 1 0 0
chr1:52337799|52337934 hsa-miR-4646-5p 1 0 0
chr1:52337799|52337934 hsa-miR-4747-5p 0 1 0
chr1:52337799|52337934 hsa-miR-6791-5p 1 0 0
chr1:52337799|52337934 hsa-miR-363-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr1:52337799|52337934
ORF Type ORF1
Protein Length 44
Nucleotide Length 132
Protein Sequence MLTFLSSSTHWMWMCSWGSSASAFPQVMVKSFISRSACLKESMF
Nucleotide Sequence TTGCTAACGTTCTTGTCATCATCCACCCACTGGATGTGGATGTGCTCCTGGGGTTCCTCCGCGTCCGCCTTCCCACAGGTGATGGTGAAGTCCTTCATCTCTCGCAGTGCCTGCCTCAAGGAATCCATGTTC
CircID chr1:52337799|52337934
ORF Type ORF2
Protein Length 34
Nucleotide Length 102
Protein Sequence MDVDVLLGFLRVRLPTGDGEVLHLSQCLPQGIHV
Nucleotide Sequence CTGGATGTGGATGTGCTCCTGGGGTTCCTCCGCGTCCGCCTTCCCACAGGTGATGGTGAAGTCCTTCATCTCTCGCAGTGCCTGCCTCAAGGAATCCATGTT
CircID chr1:52337799|52337934
ORF Type ORF3
Protein Length 43
Nucleotide Length 129
Protein Sequence MDSLRQALREMKDFTITCGKADAEEPQEHIHIQWVDDDKNVSK
Nucleotide Sequence ATGGATTCCTTGAGGCAGGCACTGCGAGAGATGAAGGACTTCACCATCACCTGTGGGAAGGCGGACGCGGAGGAACCCCAGGAGCACATCCACATCCAGTGGGTGGATGATGACAAGAACGTTAGCAAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab