CircRNA Information

General Information
circRNA Basic Information
CircID chr1:52359250|52359495
Strand -
CircType exon
Host Gene ENSG00000154222.13;
Algorism CIRI2;
Sequence CTGGGGTTGCTGGGACGTCAGGGGCCATCACTGGCTGCACTCGCTCCACGGCTGGGGGAATGACTGAGGGTGCTGTGGGAGCCTGAGAAGCCTGCTGGGGCTTCAGATCTGGGGGACCCAGAGTAGAGGTGTAGGTGGGAGGGCCTGGCCAGCCCCAGGCCTGCTACTCCTCCCCAACCCCACCGCAGCCTGAGAAGATACATACTGACCCTCAGGTGCCGGGGGCATGGCACTCAGATCCACGGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:52359250|52359495 hsa-miR-214-5p 0 0 1
chr1:52359250|52359495 hsa-miR-214-3p 0 0 1
chr1:52359250|52359495 hsa-miR-326 0 1 1
chr1:52359250|52359495 hsa-miR-484 1 1 1
chr1:52359250|52359495 hsa-miR-575 0 0 1
chr1:52359250|52359495 hsa-miR-604 0 0 1
chr1:52359250|52359495 hsa-miR-661 1 1 1
chr1:52359250|52359495 hsa-miR-765 0 1 1
chr1:52359250|52359495 hsa-miR-939-5p 0 0 1
chr1:52359250|52359495 hsa-miR-939-3p 0 0 1
chr1:52359250|52359495 hsa-miR-942-5p 0 0 1
chr1:52359250|52359495 hsa-miR-942-3p 0 0 1
chr1:52359250|52359495 hsa-miR-1266-5p 0 0 1
chr1:52359250|52359495 hsa-miR-1266-3p 0 0 1
chr1:52359250|52359495 hsa-miR-532-3p 0 1 1
chr1:52359250|52359495 hsa-miR-361-3p 0 1 1
chr1:52359250|52359495 hsa-miR-1224-3p 0 1 1
chr1:52359250|52359495 hsa-miR-188-3p 0 0 1
chr1:52359250|52359495 hsa-miR-330-5p 0 1 1
chr1:52359250|52359495 hsa-miR-1260 0 0 1
chr1:52359250|52359495 hsa-miR-1280 0 0 1
chr1:52359250|52359495 hsa-miR-657 0 1 0
chr1:52359250|52359495 hsa-miR-658 1 0 0
chr1:52359250|52359495 hsa-miR-762 0 1 0
chr1:52359250|52359495 hsa-miR-1260a 0 1 0
chr1:52359250|52359495 hsa-miR-544b 0 1 0
chr1:52359250|52359495 hsa-miR-3155a 0 1 0
chr1:52359250|52359495 hsa-miR-4313 1 0 0
chr1:52359250|52359495 hsa-miR-4323 0 1 0
chr1:52359250|52359495 hsa-miR-4264 0 1 0
chr1:52359250|52359495 hsa-miR-4290 0 1 0
chr1:52359250|52359495 hsa-miR-3943 1 0 0
chr1:52359250|52359495 hsa-miR-3155b 0 1 0
chr1:52359250|52359495 hsa-miR-4492 0 1 0
chr1:52359250|52359495 hsa-miR-4498 0 1 0
chr1:52359250|52359495 hsa-miR-4739 1 1 0
chr1:52359250|52359495 hsa-miR-6069 0 1 0
chr1:52359250|52359495 hsa-miR-7703 1 0 0
chr1:52359250|52359495 hsa-miR-7977 0 1 0
chr1:52359250|52359495 hsa-miR-12119 0 1 0
chr1:52359250|52359495 hsa-miR-4435 0 1 0
chr1:52359250|52359495 hsa-miR-92a-1-5p 0 1 0
chr1:52359250|52359495 hsa-miR-6825-5p 0 1 0
chr1:52359250|52359495 hsa-miR-7114-5p 0 1 0
chr1:52359250|52359495 hsa-miR-4755-3p 0 1 0
chr1:52359250|52359495 hsa-miR-6890-5p 0 1 0
chr1:52359250|52359495 hsa-miR-6840-5p 0 1 0
chr1:52359250|52359495 hsa-miR-6796-5p 1 1 0
chr1:52359250|52359495 hsa-miR-185-3p 1 1 0
chr1:52359250|52359495 hsa-miR-6728-3p 1 1 0
chr1:52359250|52359495 hsa-miR-6735-3p 1 0 0
chr1:52359250|52359495 hsa-miR-6815-3p 0 1 0
chr1:52359250|52359495 hsa-miR-6786-5p 1 1 0
chr1:52359250|52359495 hsa-miR-1226-5p 1 0 0
chr1:52359250|52359495 hsa-miR-1909-5p 0 1 0
chr1:52359250|52359495 hsa-miR-3944-3p 1 1 0
chr1:52359250|52359495 hsa-miR-296-3p 1 0 0
chr1:52359250|52359495 hsa-miR-4690-5p 0 1 0
chr1:52359250|52359495 hsa-miR-6749-5p 1 1 0
chr1:52359250|52359495 hsa-miR-5196-3p 1 0 0
chr1:52359250|52359495 hsa-miR-7156-3p 0 1 0
chr1:52359250|52359495 hsa-miR-3190-5p 0 1 0
chr1:52359250|52359495 hsa-miR-4707-5p 0 1 0
chr1:52359250|52359495 hsa-miR-7106-3p 1 0 0
chr1:52359250|52359495 hsa-miR-6871-3p 1 1 0
chr1:52359250|52359495 hsa-miR-6741-3p 1 0 0
chr1:52359250|52359495 hsa-miR-6872-3p 0 1 0
chr1:52359250|52359495 hsa-miR-6865-3p 1 1 0
chr1:52359250|52359495 hsa-miR-6794-3p 1 0 0
chr1:52359250|52359495 hsa-miR-6851-3p 1 0 0
chr1:52359250|52359495 hsa-miR-6769b-5p 1 0 0
chr1:52359250|52359495 hsa-miR-6812-5p 1 1 0
chr1:52359250|52359495 hsa-miR-6816-5p 1 0 0
chr1:52359250|52359495 hsa-miR-6756-5p 1 1 0
chr1:52359250|52359495 hsa-miR-6769a-5p 1 0 0
chr1:52359250|52359495 hsa-miR-6803-5p 1 0 0
chr1:52359250|52359495 hsa-miR-7111-5p 0 1 0
chr1:52359250|52359495 hsa-miR-6855-5p 0 1 0
chr1:52359250|52359495 hsa-miR-10398-5p 0 1 0
chr1:52359250|52359495 hsa-miR-6791-5p 1 1 0
chr1:52359250|52359495 hsa-miR-4757-5p 1 1 0
chr1:52359250|52359495 hsa-miR-6805-3p 1 0 0
chr1:52359250|52359495 hsa-miR-6810-3p 1 0 0
chr1:52359250|52359495 hsa-miR-6819-3p 1 0 0
chr1:52359250|52359495 hsa-miR-1295b-5p 0 1 0
chr1:52359250|52359495 hsa-miR-4691-5p 0 1 0
chr1:52359250|52359495 hsa-miR-4676-5p 0 1 0
chr1:52359250|52359495 hsa-miR-3619-5p 1 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr1:52359250|52359495
ORF Type ORF1
Protein Length 34
Nucleotide Length 102
Protein Sequence MASPRPATPPQPHRSLRRYILTLRCRGHGTQIHG
Nucleotide Sequence CTGGCCAGCCCCAGGCCTGCTACTCCTCCCCAACCCCACCGCAGCCTGAGAAGATACATACTGACCCTCAGGTGCCGGGGGCATGGCACTCAGATCCACGGG
CircID chr1:52359250|52359495
ORF Type ORF2
Protein Length 36
Nucleotide Length 111
Protein Sequence MRSLLGLQIWGTQSRGVGGRAWPAPGLLLLPNPTAA
Nucleotide Sequence CTGAGAAGCCTGCTGGGGCTTCAGATCTGGGGGACCCAGAGTAGAGGTGTAGGTGGGAGGGCCTGGCCAGCCCCAGGCCTGCTACTCCTCCCCAACCCCACCGCAGCCTGA
CircID chr1:52359250|52359495
ORF Type ORF3
Protein Length 44
Nucleotide Length 135
Protein Sequence MSAMPPAPEGQYVSSQAAVGLGRSSRPGAGQALPPTPLLWVPQI
Nucleotide Sequence CTGAGTGCCATGCCCCCGGCACCTGAGGGTCAGTATGTATCTTCTCAGGCTGCGGTGGGGTTGGGGAGGAGTAGCAGGCCTGGGGCTGGCCAGGCCCTCCCACCTACACCTCTACTCTGGGTCCCCCAGATCTGA
CircID chr1:52359250|52359495
ORF Type ORF4
Protein Length 65
Nucleotide Length 198
Protein Sequence MRVSMYLLRLRWGWGGVAGLGLARPSHLHLYSGSPRSEAPAGFSGSHSTLSHSPSRGASAASDGP
Nucleotide Sequence CTGAGGGTCAGTATGTATCTTCTCAGGCTGCGGTGGGGTTGGGGAGGAGTAGCAGGCCTGGGGCTGGCCAGGCCCTCCCACCTACACCTCTACTCTGGGTCCCCCAGATCTGAAGCCCCAGCAGGCTTCTCAGGCTCCCACAGCACCCTCAGTCATTCCCCCAGCCGTGGAGCGAGTGCAGCCAGTGATGGCCCCTGA
CircID chr1:52359250|52359495
ORF Type ORF5
Protein Length 40
Nucleotide Length 120
Protein Sequence MGPPDLKPQQASQAPTAPSVIPPAVERVQPVMAPDVPATP
Nucleotide Sequence CTGGGTCCCCCAGATCTGAAGCCCCAGCAGGCTTCTCAGGCTCCCACAGCACCCTCAGTCATTCCCCCAGCCGTGGAGCGAGTGCAGCCAGTGATGGCCCCTGACGTCCCAGCAACCCCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab