CircRNA Information

General Information
circRNA Basic Information
CircID chr1:54682656|54692561
Strand +
CircType exon
Host Gene ENSG00000271723.5;ENSG00000184313.19;
Algorism CIRI2;
Sequence CAATGGAGCAGAGATGTGGAGGCAGCTGATACTGTGTAAGCCCAGCTGTGATGTCCGAGACCTCCTGGATCTGCTCCTGGGCAGCCTGAAGGAGAAGCCCGTCACCAAGGAGGGCCGGGCTTCCATCGTGCCCCTGGCGGCAGCCAGCGGCCTGTGCGAGCTCCTGTCCGTCAACAGCTGCATGGGCCGTGTGAGGCGCATCTACCCTCAGCTGCTCCTGGCCCTGCTCATTCAGGTCCATTACCACATCGGCCTCAACCTGCCTGGCTGCGTGGCTCCTCCCAAGGACACCAAGAAGGGTGCACAGCCCTCTCCCTTCGTACCTGTGCGCTGGGTGGTGAAAGTGGTGAAAACCCTGCTACTGAGGATGGGCTGCTCTTATGAGACCACGTTTCTGGAGGACCAGGGTGGCTGGGAGCTCATGGAGCAGGTGGAGAGCCACCACCGCGGAGTGGCCTTGCTGGCAAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:54682656|54692561 hsa-miR-665 1 1 1
chr1:54682656|54692561 hsa-miR-3917 1 1 1
chr1:54682656|54692561 hsa-miR-4656 1 1 1
chr1:54682656|54692561 hsa-miR-4663 1 1 1
chr1:54682656|54692561 hsa-miR-4739 1 1 1
chr1:54682656|54692561 hsa-miR-6081 1 1 1
chr1:54682656|54692561 hsa-miR-103a-2-5p 1 1 1
chr1:54682656|54692561 hsa-miR-197-3p 1 1 1
chr1:54682656|54692561 hsa-miR-222-5p 1 1 1
chr1:54682656|54692561 hsa-miR-6765-5p 1 1 1
chr1:54682656|54692561 hsa-miR-6799-5p 1 1 1
chr1:54682656|54692561 hsa-miR-6089 1 1 1
chr1:54682656|54692561 hsa-miR-4695-5p 1 1 1
chr1:54682656|54692561 hsa-miR-5006-5p 1 1 1
chr1:54682656|54692561 hsa-miR-4793-5p 1 1 1
chr1:54682656|54692561 hsa-miR-4640-5p 1 1 1
chr1:54682656|54692561 hsa-miR-4776-5p 1 1 1
chr1:54682656|54692561 hsa-miR-4776-3p 1 1 1
chr1:54682656|54692561 hsa-miR-3670 1 1 1
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr1:54682656|54692561
ORF Type ORF1
Protein Length 151
Nucleotide Length 453
Protein Sequence MWRQLILCKPSCDVRDLLDLLLGSLKEKPVTKEGRASIVPLAAASGLCELLSVNSCMGRVRRIYPQLLLALLIQVHYHIGLNLPGCVAPPKDTKKGAQPSPFVPVRWVVKVVKTLLLRMGCSYETTFLEDQGGWELMEQVESHHRGVALLA
Nucleotide Sequence ATGTGGAGGCAGCTGATACTGTGTAAGCCCAGCTGTGATGTCCGAGACCTCCTGGATCTGCTCCTGGGCAGCCTGAAGGAGAAGCCCGTCACCAAGGAGGGCCGGGCTTCCATCGTGCCCCTGGCGGCAGCCAGCGGCCTGTGCGAGCTCCTGTCCGTCAACAGCTGCATGGGCCGTGTGAGGCGCATCTACCCTCAGCTGCTCCTGGCCCTGCTCATTCAGGTCCATTACCACATCGGCCTCAACCTGCCTGGCTGCGTGGCTCCTCCCAAGGACACCAAGAAGGGTGCACAGCCCTCTCCCTTCGTACCTGTGCGCTGGGTGGTGAAAGTGGTGAAAACCCTGCTACTGAGGATGGGCTGCTCTTATGAGACCACGTTTCTGGAGGACCAGGGTGGCTGGGAGCTCATGGAGCAGGTGGAGAGCCACCACCGCGGAGTGGCCTTGCTGGCA
CircID chr1:54682656|54692561
ORF Type ORF2
Protein Length 80
Nucleotide Length 240
Protein Sequence MDLNEQGQEQLRVDAPHTAHAAVDGQELAQAAGCRQGHDGSPALLGDGLLLQAAQEQIQEVSDITAGLTQYQLPPHLCSI
Nucleotide Sequence ATGGACCTGAATGAGCAGGGCCAGGAGCAGCTGAGGGTAGATGCGCCTCACACGGCCCATGCAGCTGTTGACGGACAGGAGCTCGCACAGGCCGCTGGCTGCCGCCAGGGGCACGATGGAAGCCCGGCCCTCCTTGGTGACGGGCTTCTCCTTCAGGCTGCCCAGGAGCAGATCCAGGAGGTCTCGGACATCACAGCTGGGCTTACACAGTATCAGCTGCCTCCACATCTCTGCTCCATT
CircID chr1:54682656|54692561
ORF Type ORF3
Protein Length 67
Nucleotide Length 201
Protein Sequence MRLTRPMQLLTDRSSHRPLAAARGTMEARPSLVTGFSFRLPRSRSRRSRTSQLGLHSISCLHISAPL
Nucleotide Sequence ATGCGCCTCACACGGCCCATGCAGCTGTTGACGGACAGGAGCTCGCACAGGCCGCTGGCTGCCGCCAGGGGCACGATGGAAGCCCGGCCCTCCTTGGTGACGGGCTTCTCCTTCAGGCTGCCCAGGAGCAGATCCAGGAGGTCTCGGACATCACAGCTGGGCTTACACAGTATCAGCTGCCTCCACATCTCTGCTCCATTG
CircID chr1:54682656|54692561
ORF Type ORF4
Protein Length 77
Nucleotide Length 231
Protein Sequence VRAPVRQQLHGPCEAHLPSAAPGPAHSGPLPHRPQPAWLRGSSQGHQEGCTALSLRTCALGGESGENPATEDGLLL*
Nucleotide Sequence GTGCGAGCTCCTGTCCGTCAACAGCTGCATGGGCCGTGTGAGGCGCATCTACCCTCAGCTGCTCCTGGCCCTGCTCATTCAGGTCCATTACCACATCGGCCTCAACCTGCCTGGCTGCGTGGCTCCTCCCAAGGACACCAAGAAGGGTGCACAGCCCTCTCCCTTCGTACCTGTGCGCTGGGTGGTGAAAGTGGTGAAAACCCTGCTACTGAGGATGGGCTGCTCTTATGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr1:54682656|54692561 FMR1 0 3 0
chr1:54682656|54692561 KHSRP 0 3 0
chr1:54682656|54692561 ELAVL1 17 6 0
chr1:54682656|54692561 SF3B1 0 1 0
chr1:54682656|54692561 YTHDF2 0 1 0
chr1:54682656|54692561 YTHDF1 1 2 0
chr1:54682656|54692561 CAPRIN1 0 1 0
chr1:54682656|54692561 CPSF7 1 2 0
chr1:54682656|54692561 NUDT21 1 2 0
chr1:54682656|54692561 CPSF4 1 1 0
chr1:54682656|54692561 RBM15B 0 3 0
chr1:54682656|54692561 XRCC6 0 1 0
chr1:54682656|54692561 EIF3H 1 0 0
chr1:54682656|54692561 SRSF1 3 0 0
chr1:54682656|54692561 U2AF2 7 3 0
chr1:54682656|54692561 ZNF622 1 1 0
chr1:54682656|54692561 GRWD1 2 0 0
chr1:54682656|54692561 PTBP1 1 0 0
chr1:54682656|54692561 HNRNPC 7 17 7
chr1:54682656|54692561 DDX3X 5 6 0
chr1:54682656|54692561 ZC3H7B 1 1 0
chr1:54682656|54692561 TBRG4 0 1 0
chr1:54682656|54692561 HNRNPA1 5 1 0
chr1:54682656|54692561 LIN28A 0 1 0
chr1:54682656|54692561 FXR2 0 1 0
chr1:54682656|54692561 TARDBP 4 2 0
chr1:54682656|54692561 YTHDC1 0 3 0
chr1:54682656|54692561 BUD13 2 0 0
chr1:54682656|54692561 DDX24 1 1 0
chr1:54682656|54692561 RTCB 0 0 1
chr1:54682656|54692561 CSTF2 2 0 0
chr1:54682656|54692561 FUS 0 2 0
chr1:54682656|54692561 WDR33 1 0 0
chr1:54682656|54692561 PPIG 2 0 0
chr1:54682656|54692561 ATXN2 2 0 1
chr1:54682656|54692561 EIF4A3 0 1 0
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab