CircRNA Information

General Information
circRNA Basic Information
CircID chr1:54850487|54850695
Strand +
CircType exon
Host Gene ENSG00000116133.10;
Algorism CIRI2;
Sequence ACTTGGGGATTATCTGTCATTCAAGATCCTTCCTTCAACCCCAAGGTCAGCTCCCATCTCATTTCCAGAAAGGCTCATACCTGGCTTGCAGGGAAGCATCTGTCTTGTCATTCCAGGTGCCAGAATCCTCTCAGAGTCATTGAAGGGTGTTCACCCATCCCACCCAAGGCTTGGCACACTGCCAGTGTCTTAGCAGGGTCTTGTGAGGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:54850487|54850695 hsa-miR-34a-5p 0 0 1
chr1:54850487|54850695 hsa-miR-34a-3p 0 0 1
chr1:54850487|54850695 hsa-miR-143-5p 0 0 1
chr1:54850487|54850695 hsa-miR-143-3p 0 0 1
chr1:54850487|54850695 hsa-miR-206 0 0 1
chr1:54850487|54850695 hsa-miR-449a 0 0 1
chr1:54850487|54850695 hsa-miR-504-5p 0 0 1
chr1:54850487|54850695 hsa-miR-504-3p 0 0 1
chr1:54850487|54850695 hsa-miR-613 0 0 1
chr1:54850487|54850695 hsa-miR-619-5p 0 0 1
chr1:54850487|54850695 hsa-miR-619-3p 0 0 1
chr1:54850487|54850695 hsa-miR-641 0 0 1
chr1:54850487|54850695 hsa-miR-648 0 1 1
chr1:54850487|54850695 hsa-miR-449b-5p 0 0 1
chr1:54850487|54850695 hsa-miR-449b-3p 0 0 1
chr1:54850487|54850695 hsa-miR-920 0 0 1
chr1:54850487|54850695 hsa-miR-1227-5p 0 0 1
chr1:54850487|54850695 hsa-miR-1227-3p 0 0 1
chr1:54850487|54850695 hsa-miR-1293 0 0 1
chr1:54850487|54850695 hsa-miR-1299 1 1 1
chr1:54850487|54850695 hsa-miR-1262 0 0 1
chr1:54850487|54850695 hsa-miR-1252-5p 0 0 1
chr1:54850487|54850695 hsa-miR-1252-3p 0 0 1
chr1:54850487|54850695 hsa-miR-513b-5p 0 0 1
chr1:54850487|54850695 hsa-miR-513b-3p 0 0 1
chr1:54850487|54850695 hsa-miR-875-3p 0 0 1
chr1:54850487|54850695 hsa-miR-556-5p 0 0 1
chr1:54850487|54850695 hsa-miR-34c-5p 0 1 1
chr1:54850487|54850695 hsa-miR-516a-3p 0 0 1
chr1:54850487|54850695 hsa-miR-1274a 0 0 1
chr1:54850487|54850695 hsa-miR-1 0 0 1
chr1:54850487|54850695 hsa-miR-516b 0 0 1
chr1:54850487|54850695 hsa-miR-1257 1 0 0
chr1:54850487|54850695 hsa-miR-4300 0 1 0
chr1:54850487|54850695 hsa-miR-4314 1 0 0
chr1:54850487|54850695 hsa-miR-4320 0 1 0
chr1:54850487|54850695 hsa-miR-3612 1 0 0
chr1:54850487|54850695 hsa-miR-3916 1 0 0
chr1:54850487|54850695 hsa-miR-4432 0 1 0
chr1:54850487|54850695 hsa-miR-4476 1 1 0
chr1:54850487|54850695 hsa-miR-4533 1 1 0
chr1:54850487|54850695 hsa-miR-4654 0 1 0
chr1:54850487|54850695 hsa-miR-4696 0 1 0
chr1:54850487|54850695 hsa-miR-4739 1 0 0
chr1:54850487|54850695 hsa-miR-4741 1 0 0
chr1:54850487|54850695 hsa-miR-5093 1 1 0
chr1:54850487|54850695 hsa-miR-5572 0 1 0
chr1:54850487|54850695 hsa-miR-5683 0 1 0
chr1:54850487|54850695 hsa-miR-6090 1 0 0
chr1:54850487|54850695 hsa-miR-9718 1 0 0
chr1:54850487|54850695 hsa-miR-12119 0 1 0
chr1:54850487|54850695 hsa-miR-6894-5p 1 0 0
chr1:54850487|54850695 hsa-miR-6728-5p 1 1 0
chr1:54850487|54850695 hsa-miR-1236-5p 0 1 0
chr1:54850487|54850695 hsa-miR-6757-5p 1 0 0
chr1:54850487|54850695 hsa-miR-6871-5p 1 1 0
chr1:54850487|54850695 hsa-miR-3667-5p 0 1 0
chr1:54850487|54850695 hsa-miR-6757-3p 0 1 0
chr1:54850487|54850695 hsa-miR-7161-3p 0 1 0
chr1:54850487|54850695 hsa-miR-296-3p 0 1 0
chr1:54850487|54850695 hsa-miR-6830-5p 1 0 0
chr1:54850487|54850695 hsa-miR-516b-5p 1 0 0
chr1:54850487|54850695 hsa-miR-3189-3p 0 1 0
chr1:54850487|54850695 hsa-miR-6761-5p 0 1 0
chr1:54850487|54850695 hsa-miR-6812-5p 1 0 0
chr1:54850487|54850695 hsa-miR-6726-5p 1 0 0
chr1:54850487|54850695 hsa-miR-6756-5p 1 1 0
chr1:54850487|54850695 hsa-miR-1249-5p 1 0 0
chr1:54850487|54850695 hsa-miR-6779-5p 1 0 0
chr1:54850487|54850695 hsa-miR-6797-5p 1 0 0
chr1:54850487|54850695 hsa-miR-3620-5p 1 0 0
chr1:54850487|54850695 hsa-miR-5196-5p 1 0 0
chr1:54850487|54850695 hsa-miR-6846-5p 1 1 0
chr1:54850487|54850695 hsa-miR-6848-5p 1 0 0
chr1:54850487|54850695 hsa-miR-6858-5p 1 0 0
chr1:54850487|54850695 hsa-miR-939-5p 1 1 0
chr1:54850487|54850695 hsa-miR-4769-5p 0 1 0
chr1:54850487|54850695 hsa-miR-6511b-5p 1 0 0
chr1:54850487|54850695 hsa-miR-4646-5p 1 0 0
chr1:54850487|54850695 hsa-miR-4747-5p 1 0 0
chr1:54850487|54850695 hsa-miR-6876-5p 1 1 0
chr1:54850487|54850695 hsa-miR-6891-5p 1 0 0
chr1:54850487|54850695 hsa-miR-6766-5p 0 1 0
chr1:54850487|54850695 hsa-miR-5591-5p 1 1 0
chr1:54850487|54850695 hsa-miR-362-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr1:54850487|54850695
ORF Type ORF1
Protein Length 36
Nucleotide Length 108
Protein Sequence MSCHSRCQNPLRVIEGCSPIPPKAWHTASVLAGSCE
Nucleotide Sequence CTGTCTTGTCATTCCAGGTGCCAGAATCCTCTCAGAGTCATTGAAGGGTGTTCACCCATCCCACCCAAGGCTTGGCACACTGCCAGTGTCTTAGCAGGGTCTTGTGAG
CircID chr1:54850487|54850695
ORF Type ORF2
Protein Length 59
Nucleotide Length 180
Protein Sequence MSFKILPSTPRSAPISFPERLIPGLQGSICLVIPGARILSESLKGVHPSHPRLGTLPVS
Nucleotide Sequence CTGTCATTCAAGATCCTTCCTTCAACCCCAAGGTCAGCTCCCATCTCATTTCCAGAAAGGCTCATACCTGGCTTGCAGGGAAGCATCTGTCTTGTCATTCCAGGTGCCAGAATCCTCTCAGAGTCATTGAAGGGTGTTCACCCATCCCACCCAAGGCTTGGCACACTGCCAGTGTCTTAG
CircID chr1:54850487|54850695
ORF Type ORF3
Protein Length 46
Nucleotide Length 141
Protein Sequence LGIICHSRSFLQPQGQLPSHFQKGSYLACREASVLSFQVPESSQSH
Nucleotide Sequence TTGGGGATTATCTGTCATTCAAGATCCTTCCTTCAACCCCAAGGTCAGCTCCCATCTCATTTCCAGAAAGGCTCATACCTGGCTTGCAGGGAAGCATCTGTCTTGTCATTCCAGGTGCCAGAATCCTCTCAGAGTCATTGA
CircID chr1:54850487|54850695
ORF Type ORF4
Protein Length 25
Nucleotide Length 78
Protein Sequence MAVCQALGGMGEHPSMTLRGFWHLE
Nucleotide Sequence CTGGCAGTGTGCCAAGCCTTGGGTGGGATGGGTGAACACCCTTCAATGACTCTGAGAGGATTCTGGCACCTGGAATGA
CircID chr1:54850487|54850695
ORF Type ORF5
Protein Length 37
Nucleotide Length 114
Protein Sequence MAPGMTRQMLPCKPGMSLSGNEMGADLGVEGRILNDR
Nucleotide Sequence CTGGCACCTGGAATGACAAGACAGATGCTTCCCTGCAAGCCAGGTATGAGCCTTTCTGGAAATGAGATGGGAGCTGACCTTGGGGTTGAAGGAAGGATCTTGAATGACAGATAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab