CircRNA Information

General Information
circRNA Basic Information
CircID chr1:54851281|54851490
Strand -
CircType exon
Host Gene ENSG00000116133.10;
Algorism CIRI2;
Sequence CTGATGCTGTCCACTCCCCAGCCCCTGCTGCAGAGCAGCGCGGACCCACTCCCACCAAGACAAAGTGGGTTTTGGGAAAGATGAGGCCTGCAGGGTTGGTGAGCCAAGAAGAATGAGCCCAGGTCCCCTGGATCCAATTCAGAGCGGAGACCACTCTCTCCACCTAGGTGTCCCAGGCTGAGGCTGGGACAAGATTCAACCCTGGAATGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:54851281|54851490 hsa-miR-107 0 0 1
chr1:54851281|54851490 hsa-miR-214-5p 0 0 1
chr1:54851281|54851490 hsa-miR-214-3p 0 0 1
chr1:54851281|54851490 hsa-miR-185-5p 0 0 1
chr1:54851281|54851490 hsa-miR-185-3p 0 0 1
chr1:54851281|54851490 hsa-miR-431-5p 0 0 1
chr1:54851281|54851490 hsa-miR-431-3p 0 0 1
chr1:54851281|54851490 hsa-miR-511-5p 0 0 1
chr1:54851281|54851490 hsa-miR-511-3p 0 0 1
chr1:54851281|54851490 hsa-miR-492 0 1 1
chr1:54851281|54851490 hsa-miR-572 0 1 1
chr1:54851281|54851490 hsa-miR-631 0 0 1
chr1:54851281|54851490 hsa-miR-661 1 1 1
chr1:54851281|54851490 hsa-miR-541-5p 0 0 1
chr1:54851281|54851490 hsa-miR-541-3p 0 0 1
chr1:54851281|54851490 hsa-miR-937-5p 0 0 1
chr1:54851281|54851490 hsa-miR-937-3p 0 0 1
chr1:54851281|54851490 hsa-miR-939-5p 0 0 1
chr1:54851281|54851490 hsa-miR-939-3p 0 0 1
chr1:54851281|54851490 hsa-miR-1205 0 1 1
chr1:54851281|54851490 hsa-miR-296-3p 1 1 1
chr1:54851281|54851490 hsa-miR-1184 0 0 1
chr1:54851281|54851490 hsa-miR-654-5p 0 0 1
chr1:54851281|54851490 hsa-miR-1302 0 0 1
chr1:54851281|54851490 hsa-miR-103 0 0 1
chr1:54851281|54851490 hsa-miR-219-2-3p 0 0 1
chr1:54851281|54851490 hsa-miR-24 0 0 1
chr1:54851281|54851490 hsa-miR-612 1 0 0
chr1:54851281|54851490 hsa-miR-637 1 0 0
chr1:54851281|54851490 hsa-miR-762 1 1 0
chr1:54851281|54851490 hsa-miR-2861 1 0 0
chr1:54851281|54851490 hsa-miR-4298 0 1 0
chr1:54851281|54851490 hsa-miR-3661 1 1 0
chr1:54851281|54851490 hsa-miR-4505 1 1 0
chr1:54851281|54851490 hsa-miR-4507 1 0 0
chr1:54851281|54851490 hsa-miR-1587 1 0 0
chr1:54851281|54851490 hsa-miR-4651 1 0 0
chr1:54851281|54851490 hsa-miR-4656 1 0 0
chr1:54851281|54851490 hsa-miR-4741 1 0 0
chr1:54851281|54851490 hsa-miR-5787 1 1 0
chr1:54851281|54851490 hsa-miR-6085 1 1 0
chr1:54851281|54851490 hsa-miR-12114 0 1 0
chr1:54851281|54851490 hsa-miR-6510-5p 0 1 0
chr1:54851281|54851490 hsa-miR-7851-3p 0 1 0
chr1:54851281|54851490 hsa-miR-6880-5p 1 1 0
chr1:54851281|54851490 hsa-miR-4725-5p 0 1 0
chr1:54851281|54851490 hsa-miR-6829-5p 1 0 0
chr1:54851281|54851490 hsa-miR-6798-5p 1 0 0
chr1:54851281|54851490 hsa-miR-6782-5p 1 0 0
chr1:54851281|54851490 hsa-miR-615-5p 0 1 0
chr1:54851281|54851490 hsa-miR-4693-3p 0 1 0
chr1:54851281|54851490 hsa-miR-6878-3p 0 1 0
chr1:54851281|54851490 hsa-miR-6802-5p 0 1 0
chr1:54851281|54851490 hsa-miR-6811-3p 1 0 0
chr1:54851281|54851490 hsa-miR-1226-3p 0 1 0
chr1:54851281|54851490 hsa-miR-4433b-5p 0 1 0
chr1:54851281|54851490 hsa-miR-7158-5p 1 0 0
chr1:54851281|54851490 hsa-miR-6732-3p 0 1 0
chr1:54851281|54851490 hsa-miR-4650-5p 0 1 0
chr1:54851281|54851490 hsa-miR-4763-3p 1 1 0
chr1:54851281|54851490 hsa-miR-5001-5p 1 0 0
chr1:54851281|54851490 hsa-miR-6726-5p 1 0 0
chr1:54851281|54851490 hsa-miR-6743-5p 1 0 0
chr1:54851281|54851490 hsa-miR-6756-5p 1 0 0
chr1:54851281|54851490 hsa-miR-6803-5p 1 0 0
chr1:54851281|54851490 hsa-miR-6813-5p 1 1 0
chr1:54851281|54851490 hsa-miR-6722-3p 1 1 0
chr1:54851281|54851490 hsa-miR-6763-5p 0 1 0
chr1:54851281|54851490 hsa-miR-3620-5p 1 0 0
chr1:54851281|54851490 hsa-miR-1909-3p 0 1 0
chr1:54851281|54851490 hsa-miR-4745-5p 1 0 0
chr1:54851281|54851490 hsa-miR-6846-5p 1 0 0
chr1:54851281|54851490 hsa-miR-6848-5p 1 0 0
chr1:54851281|54851490 hsa-miR-4758-5p 1 0 0
chr1:54851281|54851490 hsa-miR-3940-5p 1 0 0
chr1:54851281|54851490 hsa-miR-4700-5p 0 1 0
chr1:54851281|54851490 hsa-miR-4667-5p 0 1 0
chr1:54851281|54851490 hsa-miR-6511a-3p 0 1 0
chr1:54851281|54851490 hsa-miR-6511b-3p 0 1 0
chr1:54851281|54851490 hsa-miR-6891-3p 0 1 0
chr1:54851281|54851490 hsa-miR-6783-3p 1 0 0
chr1:54851281|54851490 hsa-miR-3619-5p 0 1 0
chr1:54851281|54851490 hsa-miR-6811-5p 0 1 0
chr1:54851281|54851490 hsa-miR-6843-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr1:54851281|54851490
ORF Type ORF1
Protein Length 27
Nucleotide Length 84
Protein Sequence LMLSTPQPLLQSSADPLPPRQSGFWER
Nucleotide Sequence CTGATGCTGTCCACTCCCCAGCCCCTGCTGCAGAGCAGCGCGGACCCACTCCCACCAAGACAAAGTGGGTTTTGGGAAAGATGA
CircID chr1:54851281|54851490
ORF Type ORF2
Protein Length 31
Nucleotide Length 93
Protein Sequence MQASSFPKPTLSWWEWVRAALQQGLGSGQHQ
Nucleotide Sequence CTGCAGGCCTCATCTTTCCCAAAACCCACTTTGTCTTGGTGGGAGTGGGTCCGCGCTGCTCTGCAGCAGGGGCTGGGGAGTGGACAGCATCAG
CircID chr1:54851281|54851490
ORF Type ORF3
Protein Length 58
Nucleotide Length 174
Protein Sequence MGHLGGESGLRSELDPGDLGSFFLAHQPCRPHLSQNPLCLGGSGSALLCSRGWGVDSI
Nucleotide Sequence CTGGGACACCTAGGTGGAGAGAGTGGTCTCCGCTCTGAATTGGATCCAGGGGACCTGGGCTCATTCTTCTTGGCTCACCAACCCTGCAGGCCTCATCTTTCCCAAAACCCACTTTGTCTTGGTGGGAGTGGGTCCGCGCTGCTCTGCAGCAGGGGCTGGGGAGTGGACAGCATC
CircID chr1:54851281|54851490
ORF Type ORF4
Protein Length 47
Nucleotide Length 141
Protein Sequence MNWIQGTWAHSSWLTNPAGLIFPKTHFVLVGVGPRCSAAGAGEWTAS
Nucleotide Sequence CTGAATTGGATCCAGGGGACCTGGGCTCATTCTTCTTGGCTCACCAACCCTGCAGGCCTCATCTTTCCCAAAACCCACTTTGTCTTGGTGGGAGTGGGTCCGCGCTGCTCTGCAGCAGGGGCTGGGGAGTGGACAGCATCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab