CircRNA Information

General Information
circRNA Basic Information
CircID chr1:54852205|54852379
Strand -
CircType exon
Host Gene ENSG00000116133.10;
Algorism CIRI2;
Sequence GTGTCTGTCTCTCCAGGCGGGCTCCAGCTCAGTGCCTGGCGGCCTTGCAGATCTTGTCGTACACCTCGGGGAAGGCGTCCTGGCAACCCAGCTTCTCTCGCAGCTTGTGGTACAAGGAGCCATCAAACATCTCCCAGAACTCCTCCCGGTTCATGTAGCAGTCGGCATACAGCAT
circRNA Expression in different cancers

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circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:54852205|54852379 hsa-miR-221-5p 0 0 1
chr1:54852205|54852379 hsa-miR-221-3p 0 0 1
chr1:54852205|54852379 hsa-miR-222-5p 0 0 1
chr1:54852205|54852379 hsa-miR-222-3p 0 0 1
chr1:54852205|54852379 hsa-miR-185-5p 0 0 1
chr1:54852205|54852379 hsa-miR-185-3p 0 0 1
chr1:54852205|54852379 hsa-miR-558 0 0 1
chr1:54852205|54852379 hsa-miR-765 1 0 1
chr1:54852205|54852379 hsa-miR-1202 1 0 1
chr1:54852205|54852379 hsa-miR-140-3p 0 0 1
chr1:54852205|54852379 hsa-miR-1254 0 0 1
chr1:54852205|54852379 hsa-miR-320e 0 1 0
chr1:54852205|54852379 hsa-miR-4306 0 1 0
chr1:54852205|54852379 hsa-miR-4269 0 1 0
chr1:54852205|54852379 hsa-miR-4448 0 1 0
chr1:54852205|54852379 hsa-miR-3135b 0 1 0
chr1:54852205|54852379 hsa-miR-4479 1 0 0
chr1:54852205|54852379 hsa-miR-4539 1 0 0
chr1:54852205|54852379 hsa-miR-4673 1 1 0
chr1:54852205|54852379 hsa-miR-4706 1 0 0
chr1:54852205|54852379 hsa-miR-4734 1 0 0
chr1:54852205|54852379 hsa-miR-4739 1 0 0
chr1:54852205|54852379 hsa-miR-4784 1 0 0
chr1:54852205|54852379 hsa-miR-5194 1 0 0
chr1:54852205|54852379 hsa-miR-6127 1 0 0
chr1:54852205|54852379 hsa-miR-7106-5p 1 0 0
chr1:54852205|54852379 hsa-miR-6894-5p 1 0 0
chr1:54852205|54852379 hsa-miR-6799-5p 1 0 0
chr1:54852205|54852379 hsa-miR-6089 1 0 0
chr1:54852205|54852379 hsa-miR-3192-5p 0 1 0
chr1:54852205|54852379 hsa-miR-7154-3p 1 0 0
chr1:54852205|54852379 hsa-miR-4755-3p 0 1 0
chr1:54852205|54852379 hsa-miR-7160-5p 1 0 0
chr1:54852205|54852379 hsa-miR-6840-5p 1 0 0
chr1:54852205|54852379 hsa-miR-6772-5p 1 0 0
chr1:54852205|54852379 hsa-miR-656-5p 0 1 0
chr1:54852205|54852379 hsa-miR-5006-5p 0 1 0
chr1:54852205|54852379 hsa-miR-1908-3p 1 0 0
chr1:54852205|54852379 hsa-miR-4783-3p 1 0 0
chr1:54852205|54852379 hsa-miR-30c-2-3p 0 1 0
chr1:54852205|54852379 hsa-miR-6771-5p 1 0 0
chr1:54852205|54852379 hsa-miR-6501-5p 1 1 0
chr1:54852205|54852379 hsa-miR-149-3p 1 0 0
chr1:54852205|54852379 hsa-miR-2276-3p 0 1 0
chr1:54852205|54852379 hsa-miR-6878-5p 1 0 0
chr1:54852205|54852379 hsa-miR-4708-3p 0 1 0
chr1:54852205|54852379 hsa-miR-4707-5p 1 0 0
chr1:54852205|54852379 hsa-miR-483-5p 1 0 0
chr1:54852205|54852379 hsa-miR-3177-5p 1 0 0
chr1:54852205|54852379 hsa-miR-675-3p 0 1 0
chr1:54852205|54852379 hsa-miR-6870-5p 1 0 0
chr1:54852205|54852379 hsa-miR-6752-5p 1 0 0
chr1:54852205|54852379 hsa-miR-6756-5p 1 0 0
chr1:54852205|54852379 hsa-miR-7110-5p 1 0 0
chr1:54852205|54852379 hsa-miR-6763-5p 1 0 0
chr1:54852205|54852379 hsa-miR-6779-5p 1 0 0
chr1:54852205|54852379 hsa-miR-6788-5p 0 1 0
chr1:54852205|54852379 hsa-miR-3620-5p 1 1 0
chr1:54852205|54852379 hsa-miR-4728-5p 1 0 0
chr1:54852205|54852379 hsa-miR-6836-5p 1 0 0
chr1:54852205|54852379 hsa-miR-6777-5p 1 0 0
chr1:54852205|54852379 hsa-miR-6883-5p 1 0 0
chr1:54852205|54852379 hsa-miR-6887-5p 1 0 0
chr1:54852205|54852379 hsa-miR-6889-5p 1 0 0
chr1:54852205|54852379 hsa-miR-30c-1-3p 0 1 0
chr1:54852205|54852379 hsa-miR-1914-3p 1 0 0
chr1:54852205|54852379 hsa-miR-6785-5p 1 0 0
chr1:54852205|54852379 hsa-miR-320a-3p 1 1 0
chr1:54852205|54852379 hsa-miR-320b 1 1 0
chr1:54852205|54852379 hsa-miR-320c 0 1 0
chr1:54852205|54852379 hsa-miR-6715b-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr1:54852205|54852379
ORF Type ORF1
Protein Length 57
Nucleotide Length 171
Protein Sequence MSLQAGSSSVPGGLADLVVHLGEGVLATQLLSQLVVQGAIKHLPELLPVHVAVGIQH
Nucleotide Sequence CTGTCTCTCCAGGCGGGCTCCAGCTCAGTGCCTGGCGGCCTTGCAGATCTTGTCGTACACCTCGGGGAAGGCGTCCTGGCAACCCAGCTTCTCTCGCAGCTTGTGGTACAAGGAGCCATCAAACATCTCCCAGAACTCCTCCCGGTTCATGTAGCAGTCGGCATACAGCAT
CircID chr1:54852205|54852379
ORF Type ORF2
Protein Length 40
Nucleotide Length 123
Protein Sequence MAALQILSYTSGKASWQPSFSRSLWYKEPSNISQNSSRFM
Nucleotide Sequence CTGGCGGCCTTGCAGATCTTGTCGTACACCTCGGGGAAGGCGTCCTGGCAACCCAGCTTCTCTCGCAGCTTGTGGTACAAGGAGCCATCAAACATCTCCCAGAACTCCTCCCGGTTCATGTAG
CircID chr1:54852205|54852379
ORF Type ORF3
Protein Length 48
Nucleotide Length 147
Protein Sequence MLYADCYMNREEFWEMFDGSLYHKLREKLGCQDAFPEVYDKICKAARH
Nucleotide Sequence ATGCTGTATGCCGACTGCTACATGAACCGGGAGGAGTTCTGGGAGATGTTTGATGGCTCCTTGTACCACAAGCTGCGAGAGAAGCTGGGTTGCCAGGACGCCTTCCCCGAGGTGTACGACAAGATCTGCAAGGCCGCCAGGCACTGA
CircID chr1:54852205|54852379
ORF Type ORF4
Protein Length 42
Nucleotide Length 126
Protein Sequence MMAPCTTSCERSWVARTPSPRCTTRSARPPGTELEPAWRDRH
Nucleotide Sequence TTGATGGCTCCTTGTACCACAAGCTGCGAGAGAAGCTGGGTTGCCAGGACGCCTTCCCCGAGGTGTACGACAAGATCTGCAAGGCCGCCAGGCACTGAGCTGGAGCCCGCCTGGAGAGACAGACAC
CircID chr1:54852205|54852379
ORF Type ORF5
Protein Length 28
Nucleotide Length 84
Protein Sequence MPGRLPRGVRQDLQGRQALSWSPPGETD
Nucleotide Sequence TTGCCAGGACGCCTTCCCCGAGGTGTACGACAAGATCTGCAAGGCCGCCAGGCACTGAGCTGGAGCCCGCCTGGAGAGACAGAC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab