CircRNA Information

General Information
circRNA Basic Information
CircID chr1:6219247|6219473
Strand +
CircType exon
Host Gene ENSG00000158286.11;
Algorism CIRI2;
Sequence CTTCTGTCCAGTGTCCCAGTCTTGTGCCTGCTCTAAGAGCCTGACCCTGGGGACCGGTCCCATTTGCTAAGTCGGGTGTTCCCTCCATGTGGGGACATCGCCCCCATTTTTCTGTTTGGATCTGTGATGATCCATATTTTTCAGTAGAGGCTCTTCTGAGAGGCCGTTCGGAGCCCAGCTGTTTCCTTTAGGCTCTGATGTCTTCTCTCTCTTTTCCGGGACACTTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:6219247|6219473 hsa-miR-484 0 0 1
chr1:6219247|6219473 hsa-miR-641 0 0 1
chr1:6219247|6219473 hsa-miR-1246 0 0 1
chr1:6219247|6219473 hsa-miR-1253 0 1 1
chr1:6219247|6219473 hsa-miR-548p 0 0 1
chr1:6219247|6219473 hsa-miR-1207-3p 0 0 1
chr1:6219247|6219473 hsa-miR-1302 0 0 1
chr1:6219247|6219473 hsa-miR-638 1 0 0
chr1:6219247|6219473 hsa-miR-658 1 0 0
chr1:6219247|6219473 hsa-miR-663b 1 0 0
chr1:6219247|6219473 hsa-miR-3153 0 1 0
chr1:6219247|6219473 hsa-miR-3155a 1 1 0
chr1:6219247|6219473 hsa-miR-3197 1 0 0
chr1:6219247|6219473 hsa-miR-4298 0 1 0
chr1:6219247|6219473 hsa-miR-4269 1 1 0
chr1:6219247|6219473 hsa-miR-4281 1 0 0
chr1:6219247|6219473 hsa-miR-378g 0 1 0
chr1:6219247|6219473 hsa-miR-4449 1 1 0
chr1:6219247|6219473 hsa-miR-3155b 1 1 0
chr1:6219247|6219473 hsa-miR-4488 0 1 0
chr1:6219247|6219473 hsa-miR-4496 0 1 0
chr1:6219247|6219473 hsa-miR-4514 1 0 0
chr1:6219247|6219473 hsa-miR-4515 0 1 0
chr1:6219247|6219473 hsa-miR-4644 0 1 0
chr1:6219247|6219473 hsa-miR-4669 1 0 0
chr1:6219247|6219473 hsa-miR-4674 0 1 0
chr1:6219247|6219473 hsa-miR-4696 1 0 0
chr1:6219247|6219473 hsa-miR-6124 0 1 0
chr1:6219247|6219473 hsa-miR-8085 0 1 0
chr1:6219247|6219473 hsa-miR-12122 0 1 0
chr1:6219247|6219473 hsa-miR-4433b-3p 1 0 0
chr1:6219247|6219473 hsa-miR-4433a-3p 1 0 0
chr1:6219247|6219473 hsa-miR-125b-1-3p 1 0 0
chr1:6219247|6219473 hsa-miR-6089 1 0 0
chr1:6219247|6219473 hsa-miR-6873-5p 1 1 0
chr1:6219247|6219473 hsa-miR-593-5p 1 0 0
chr1:6219247|6219473 hsa-miR-6806-5p 1 1 0
chr1:6219247|6219473 hsa-miR-1178-5p 0 1 0
chr1:6219247|6219473 hsa-miR-432-5p 1 0 0
chr1:6219247|6219473 hsa-miR-1226-5p 1 0 0
chr1:6219247|6219473 hsa-miR-4640-5p 1 0 0
chr1:6219247|6219473 hsa-miR-1908-5p 1 0 0
chr1:6219247|6219473 hsa-miR-4690-5p 1 1 0
chr1:6219247|6219473 hsa-miR-4732-5p 1 0 0
chr1:6219247|6219473 hsa-miR-4446-3p 1 0 0
chr1:6219247|6219473 hsa-miR-149-3p 1 0 0
chr1:6219247|6219473 hsa-miR-6717-5p 0 1 0
chr1:6219247|6219473 hsa-miR-4740-5p 1 0 0
chr1:6219247|6219473 hsa-miR-4742-5p 1 0 0
chr1:6219247|6219473 hsa-miR-214-3p 1 1 0
chr1:6219247|6219473 hsa-miR-671-3p 0 1 0
chr1:6219247|6219473 hsa-miR-188-3p 0 1 0
chr1:6219247|6219473 hsa-miR-219b-5p 0 1 0
chr1:6219247|6219473 hsa-miR-4802-3p 0 1 0
chr1:6219247|6219473 hsa-miR-1207-5p 1 0 0
chr1:6219247|6219473 hsa-miR-6756-5p 1 0 0
chr1:6219247|6219473 hsa-miR-1249-5p 1 0 0
chr1:6219247|6219473 hsa-miR-6797-5p 1 1 0
chr1:6219247|6219473 hsa-miR-6879-5p 1 0 0
chr1:6219247|6219473 hsa-miR-328-5p 1 0 0
chr1:6219247|6219473 hsa-miR-4685-5p 1 0 0
chr1:6219247|6219473 hsa-miR-4749-5p 1 0 0
chr1:6219247|6219473 hsa-miR-6735-5p 1 0 0
chr1:6219247|6219473 hsa-miR-4436b-3p 1 0 0
chr1:6219247|6219473 hsa-miR-4697-5p 0 1 0
chr1:6219247|6219473 hsa-miR-6511a-5p 1 0 0
chr1:6219247|6219473 hsa-miR-6511b-5p 1 1 0
chr1:6219247|6219473 hsa-miR-6739-5p 0 1 0
chr1:6219247|6219473 hsa-miR-6750-5p 1 1 0
chr1:6219247|6219473 hsa-miR-769-3p 1 0 0
chr1:6219247|6219473 hsa-miR-10400-3p 0 1 0
chr1:6219247|6219473 hsa-miR-6859-5p 1 1 0
chr1:6219247|6219473 hsa-miR-6744-3p 0 1 0
chr1:6219247|6219473 hsa-miR-3619-5p 1 0 0
chr1:6219247|6219473 hsa-miR-6764-5p 0 1 0
chr1:6219247|6219473 hsa-miR-6715b-5p 1 1 0
chr1:6219247|6219473 hsa-miR-337-5p 0 1 0
chr1:6219247|6219473 hsa-miR-4509 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr1:6219247|6219473
ORF Type ORF1
Protein Length 27
Nucleotide Length 84
Protein Sequence MLSRVFPPCGDIAPIFLFGSVMIHIFQ
Nucleotide Sequence TTGCTAAGTCGGGTGTTCCCTCCATGTGGGGACATCGCCCCCATTTTTCTGTTTGGATCTGTGATGATCCATATTTTTCAGTAG
CircID chr1:6219247|6219473
ORF Type ORF2
Protein Length 34
Nucleotide Length 105
Protein Sequence MWGHRPHFSVWICDDPYFSVEALLRGRSEPSCFL
Nucleotide Sequence ATGTGGGGACATCGCCCCCATTTTTCTGTTTGGATCTGTGATGATCCATATTTTTCAGTAGAGGCTCTTCTGAGAGGCCGTTCGGAGCCCAGCTGTTTCCTTTAG
CircID chr1:6219247|6219473
ORF Type ORF3
Protein Length 59
Nucleotide Length 177
Protein Sequence MGSERPLRRASTEKYGSSQIQTEKWGRCPHMEGTPDLANGTGPQGQALRAGTRLGHWTE
Nucleotide Sequence CTGGGCTCCGAACGGCCTCTCAGAAGAGCCTCTACTGAAAAATATGGATCATCACAGATCCAAACAGAAAAATGGGGGCGATGTCCCCACATGGAGGGAACACCCGACTTAGCAAATGGGACCGGTCCCCAGGGTCAGGCTCTTAGAGCAGGCACAAGACTGGGACACTGGACAGAA
CircID chr1:6219247|6219473
ORF Type ORF4
Protein Length 25
Nucleotide Length 78
Protein Sequence MKNMDHHRSKQKNGGDVPTWREHPT
Nucleotide Sequence CTGAAAAATATGGATCATCACAGATCCAAACAGAAAAATGGGGGCGATGTCCCCACATGGAGGGAACACCCGACTTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab