CircRNA Information

General Information
circRNA Basic Information
CircID chr1:6222390|6222623
Strand -
CircType exon
Host Gene ENSG00000116237.14;
Algorism CIRI2;
Sequence TCCAGCCTCCAGCCTGGGCCACAGAGCAAGACTGTCTTAAGAAAATAAAAAAAATGGAGTTCATCTTTTATCCCTAAGTAATTGCTGACTTCTGCTCTGGGATTATAAACAGGGTGGGAATGTTCTCCCACCATCCCTACCCCTGGAATTCCTCTCCAAAGCAGAGTACGTCAAGTTTTCCCTGGTGTCAGACAGCATTTCACCATGAAACCCTAAGACCTGCCTCCTGGGCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:6222390|6222623 hsa-miR-208a-5p 0 0 1
chr1:6222390|6222623 hsa-miR-208a-3p 0 0 1
chr1:6222390|6222623 hsa-miR-10a-5p 0 0 1
chr1:6222390|6222623 hsa-miR-10a-3p 0 0 1
chr1:6222390|6222623 hsa-miR-10b-5p 0 0 1
chr1:6222390|6222623 hsa-miR-10b-3p 0 0 1
chr1:6222390|6222623 hsa-miR-136-5p 0 0 1
chr1:6222390|6222623 hsa-miR-136-3p 0 0 1
chr1:6222390|6222623 hsa-miR-185-5p 0 0 1
chr1:6222390|6222623 hsa-miR-185-3p 0 0 1
chr1:6222390|6222623 hsa-miR-374a-5p 0 0 1
chr1:6222390|6222623 hsa-miR-374a-3p 0 0 1
chr1:6222390|6222623 hsa-miR-431-5p 0 0 1
chr1:6222390|6222623 hsa-miR-431-3p 0 0 1
chr1:6222390|6222623 hsa-miR-545-5p 0 0 1
chr1:6222390|6222623 hsa-miR-545-3p 0 0 1
chr1:6222390|6222623 hsa-miR-620 0 0 1
chr1:6222390|6222623 hsa-miR-626 0 0 1
chr1:6222390|6222623 hsa-miR-641 0 0 1
chr1:6222390|6222623 hsa-miR-650 0 1 1
chr1:6222390|6222623 hsa-miR-298 0 1 1
chr1:6222390|6222623 hsa-miR-541-5p 0 0 1
chr1:6222390|6222623 hsa-miR-541-3p 0 0 1
chr1:6222390|6222623 hsa-miR-665 0 1 1
chr1:6222390|6222623 hsa-miR-543 0 0 1
chr1:6222390|6222623 hsa-miR-374b-5p 0 0 1
chr1:6222390|6222623 hsa-miR-374b-3p 0 0 1
chr1:6222390|6222623 hsa-miR-208b-5p 0 0 1
chr1:6222390|6222623 hsa-miR-208b-3p 0 0 1
chr1:6222390|6222623 hsa-miR-940 0 0 1
chr1:6222390|6222623 hsa-miR-663b 1 1 1
chr1:6222390|6222623 hsa-miR-1270 0 0 1
chr1:6222390|6222623 hsa-miR-1827 0 0 1
chr1:6222390|6222623 hsa-miR-296-3p 1 0 1
chr1:6222390|6222623 hsa-miR-485-5p 0 0 1
chr1:6222390|6222623 hsa-miR-654-5p 0 0 1
chr1:6222390|6222623 hsa-miR-1224-3p 0 0 1
chr1:6222390|6222623 hsa-miR-188-3p 0 0 1
chr1:6222390|6222623 hsa-miR-1260 0 0 1
chr1:6222390|6222623 hsa-miR-1280 0 0 1
chr1:6222390|6222623 hsa-miR-1274b 0 0 1
chr1:6222390|6222623 hsa-miR-768-5p 0 0 1
chr1:6222390|6222623 hsa-miR-203 0 0 1
chr1:6222390|6222623 hsa-miR-499-5p 0 0 1
chr1:6222390|6222623 hsa-miR-608 1 1 0
chr1:6222390|6222623 hsa-miR-3135a 0 1 0
chr1:6222390|6222623 hsa-miR-3137 1 0 0
chr1:6222390|6222623 hsa-miR-3612 0 1 0
chr1:6222390|6222623 hsa-miR-3652 0 1 0
chr1:6222390|6222623 hsa-miR-4468 0 1 0
chr1:6222390|6222623 hsa-miR-4739 1 0 0
chr1:6222390|6222623 hsa-miR-5192 1 0 0
chr1:6222390|6222623 hsa-miR-5691 0 1 0
chr1:6222390|6222623 hsa-miR-12131 0 1 0
chr1:6222390|6222623 hsa-miR-6765-5p 1 0 0
chr1:6222390|6222623 hsa-miR-7106-5p 1 0 0
chr1:6222390|6222623 hsa-miR-6728-5p 1 0 0
chr1:6222390|6222623 hsa-miR-6089 1 0 0
chr1:6222390|6222623 hsa-miR-6757-5p 0 1 0
chr1:6222390|6222623 hsa-miR-4695-5p 0 1 0
chr1:6222390|6222623 hsa-miR-4474-3p 1 0 0
chr1:6222390|6222623 hsa-miR-7108-5p 1 1 0
chr1:6222390|6222623 hsa-miR-3180-3p 1 0 0
chr1:6222390|6222623 hsa-miR-6782-5p 1 0 0
chr1:6222390|6222623 hsa-miR-3934-3p 0 1 0
chr1:6222390|6222623 hsa-miR-1229-5p 1 1 0
chr1:6222390|6222623 hsa-miR-6753-5p 0 1 0
chr1:6222390|6222623 hsa-miR-30c-2-3p 0 1 0
chr1:6222390|6222623 hsa-miR-6824-5p 1 0 0
chr1:6222390|6222623 hsa-miR-5584-5p 0 1 0
chr1:6222390|6222623 hsa-miR-7113-5p 0 1 0
chr1:6222390|6222623 hsa-miR-203a-3p 0 1 0
chr1:6222390|6222623 hsa-miR-6501-3p 0 1 0
chr1:6222390|6222623 hsa-miR-329-5p 0 1 0
chr1:6222390|6222623 hsa-miR-4763-3p 1 0 0
chr1:6222390|6222623 hsa-miR-6778-5p 0 1 0
chr1:6222390|6222623 hsa-miR-6893-5p 1 1 0
chr1:6222390|6222623 hsa-miR-6756-5p 1 1 0
chr1:6222390|6222623 hsa-miR-6819-5p 1 0 0
chr1:6222390|6222623 hsa-miR-7111-5p 1 0 0
chr1:6222390|6222623 hsa-miR-4685-5p 0 1 0
chr1:6222390|6222623 hsa-miR-6848-5p 1 0 0
chr1:6222390|6222623 hsa-miR-30c-1-3p 0 1 0
chr1:6222390|6222623 hsa-miR-6856-5p 1 0 0
chr1:6222390|6222623 hsa-miR-6855-5p 1 0 0
chr1:6222390|6222623 hsa-miR-6805-3p 0 1 0
chr1:6222390|6222623 hsa-miR-6859-5p 0 1 0
chr1:6222390|6222623 hsa-miR-6807-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr1:6222390|6222623
ORF Type ORF1
Protein Length 38
Nucleotide Length 117
Protein Sequence MLWDYKQGGNVLPPSLPLEFLSKAEYVKFSLVSDSISP
Nucleotide Sequence CTGCTCTGGGATTATAAACAGGGTGGGAATGTTCTCCCACCATCCCTACCCCTGGAATTCCTCTCCAAAGCAGAGTACGTCAAGTTTTCCCTGGTGTCAGACAGCATTTCACCATGA
CircID chr1:6222390|6222623
ORF Type ORF2
Protein Length 38
Nucleotide Length 114
Protein Sequence MFSHHPYPWNSSPKQSTSSFPWCQTAFHHETLRPASWA
Nucleotide Sequence ATGTTCTCCCACCATCCCTACCCCTGGAATTCCTCTCCAAAGCAGAGTACGTCAAGTTTTCCCTGGTGTCAGACAGCATTTCACCATGAAACCCTAAGACCTGCCTCCTGGGCT
CircID chr1:6222390|6222623
ORF Type ORF3
Protein Length 31
Nucleotide Length 96
Protein Sequence MLSDTRENLTYSALERNSRGRDGGRTFPPCL
Nucleotide Sequence ATGCTGTCTGACACCAGGGAAAACTTGACGTACTCTGCTTTGGAGAGGAATTCCAGGGGTAGGGATGGTGGGAGAACATTCCCACCCTGTTTATAA
CircID chr1:6222390|6222623
ORF Type ORF4
Protein Length 54
Nucleotide Length 162
Protein Sequence MLWRGIPGVGMVGEHSHPVYNPRAEVSNYLGIKDELHFFYFLKTVLLCGPGWRL
Nucleotide Sequence CTGCTTTGGAGAGGAATTCCAGGGGTAGGGATGGTGGGAGAACATTCCCACCCTGTTTATAATCCCAGAGCAGAAGTCAGCAATTACTTAGGGATAAAAGATGAACTCCATTTTTTTTATTTTCTTAAGACAGTCTTGCTCTGTGGCCCAGGCTGGAGGCTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab