CircRNA Information

General Information
circRNA Basic Information
CircID chr1:63638685|63638800
Strand +
CircType exon
Host Gene ENSG00000079739.14;
Algorism CIRI2;
Sequence CGGTCCCGAAGCTCTCCTCCCCACAAAGGGACAGTTTGCTCGCGTCCATCAAATTCCCAAAAAACTTCCAGCCAGTTGGGGTCTCATACAAAGCAATCTTTGTAGCACTAGCCACC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:63638685|63638800 hsa-miR-204-5p 0 0 1
chr1:63638685|63638800 hsa-miR-204-3p 0 0 1
chr1:63638685|63638800 hsa-miR-211-5p 0 0 1
chr1:63638685|63638800 hsa-miR-211-3p 0 0 1
chr1:63638685|63638800 hsa-miR-221-5p 0 0 1
chr1:63638685|63638800 hsa-miR-221-3p 0 0 1
chr1:63638685|63638800 hsa-miR-222-5p 0 0 1
chr1:63638685|63638800 hsa-miR-222-3p 0 0 1
chr1:63638685|63638800 hsa-miR-520f-5p 0 0 1
chr1:63638685|63638800 hsa-miR-520f-3p 0 0 1
chr1:63638685|63638800 hsa-miR-765 0 0 1
chr1:63638685|63638800 hsa-miR-892b 0 0 1
chr1:63638685|63638800 hsa-miR-939-5p 0 0 1
chr1:63638685|63638800 hsa-miR-939-3p 0 0 1
chr1:63638685|63638800 hsa-miR-297 0 0 1
chr1:63638685|63638800 hsa-miR-548g-5p 0 0 1
chr1:63638685|63638800 hsa-miR-548g-3p 0 0 1
chr1:63638685|63638800 hsa-miR-129-5p 0 0 1
chr1:63638685|63638800 hsa-miR-769-5p 0 0 1
chr1:63638685|63638800 hsa-miR-512-3p 0 0 1
chr1:63638685|63638800 hsa-miR-491-5p 0 0 1
chr1:63638685|63638800 hsa-miR-1283 0 0 1
chr1:63638685|63638800 hsa-miR-524-5p 0 0 1
chr1:63638685|63638800 hsa-miR-520d-5p 0 0 1
chr1:63638685|63638800 hsa-miR-4270 1 0 0
chr1:63638685|63638800 hsa-miR-3652 1 1 0
chr1:63638685|63638800 hsa-miR-4430 1 0 0
chr1:63638685|63638800 hsa-miR-3135b 1 0 0
chr1:63638685|63638800 hsa-miR-4505 1 0 0
chr1:63638685|63638800 hsa-miR-1587 1 0 0
chr1:63638685|63638800 hsa-miR-4706 1 0 0
chr1:63638685|63638800 hsa-miR-4739 1 1 0
chr1:63638685|63638800 hsa-miR-4784 0 1 0
chr1:63638685|63638800 hsa-miR-5787 1 0 0
chr1:63638685|63638800 hsa-miR-1287-5p 1 0 0
chr1:63638685|63638800 hsa-miR-7106-5p 0 1 0
chr1:63638685|63638800 hsa-miR-4722-5p 1 0 0
chr1:63638685|63638800 hsa-miR-3064-5p 1 0 0
chr1:63638685|63638800 hsa-miR-6842-3p 1 0 0
chr1:63638685|63638800 hsa-miR-6716-5p 1 0 0
chr1:63638685|63638800 hsa-miR-6871-5p 1 0 0
chr1:63638685|63638800 hsa-miR-3180-3p 1 0 0
chr1:63638685|63638800 hsa-miR-6748-5p 1 0 0
chr1:63638685|63638800 hsa-miR-6796-5p 1 1 0
chr1:63638685|63638800 hsa-miR-3150b-3p 0 1 0
chr1:63638685|63638800 hsa-miR-7109-5p 1 0 0
chr1:63638685|63638800 hsa-miR-193b-5p 1 0 0
chr1:63638685|63638800 hsa-miR-1908-5p 1 0 0
chr1:63638685|63638800 hsa-miR-149-3p 1 0 0
chr1:63638685|63638800 hsa-miR-3162-5p 1 0 0
chr1:63638685|63638800 hsa-miR-1207-5p 1 0 0
chr1:63638685|63638800 hsa-miR-3180 1 0 0
chr1:63638685|63638800 hsa-miR-5001-5p 1 0 0
chr1:63638685|63638800 hsa-miR-6803-5p 1 0 0
chr1:63638685|63638800 hsa-miR-6819-5p 1 0 0
chr1:63638685|63638800 hsa-miR-6763-5p 1 0 0
chr1:63638685|63638800 hsa-miR-7111-5p 1 0 0
chr1:63638685|63638800 hsa-miR-3620-5p 1 0 0
chr1:63638685|63638800 hsa-miR-328-5p 1 0 0
chr1:63638685|63638800 hsa-miR-6777-5p 1 0 0
chr1:63638685|63638800 hsa-miR-6858-5p 1 0 0
chr1:63638685|63638800 hsa-miR-6889-5p 1 0 0
chr1:63638685|63638800 hsa-miR-9851-5p 1 0 0
chr1:63638685|63638800 hsa-miR-664a-5p 1 0 0
chr1:63638685|63638800 hsa-miR-10395-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr1:63638685|63638800
ORF Type ORF1
Protein Length 27
Nucleotide Length 81
Protein Sequence MLASIKFPKNFQPVGVSYKAIFVALAT
Nucleotide Sequence TTGCTCGCGTCCATCAAATTCCCAAAAAACTTCCAGCCAGTTGGGGTCTCATACAAAGCAATCTTTGTAGCACTAGCCACC
CircID chr1:63638685|63638800
ORF Type ORF2
Protein Length 30
Nucleotide Length 90
Protein Sequence MYETPTGWKFFGNLMDASKLSLCGEESFGT
Nucleotide Sequence TTGTATGAGACCCCAACTGGCTGGAAGTTTTTTGGGAATTTGATGGACGCGAGCAAACTGTCCCTTTGTGGGGAGGAGAGCTTCGGGACC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab