CircRNA Information

General Information
circRNA Basic Information
CircID chr1:6468016|6468219
Strand +
CircType exon
Host Gene ENSG00000171680.19;
Algorism CIRI2;
Sequence CTGCTCAAGTCTAAGTCCGAGGCCAGCCTCCTCCAGCTGCTGGCAGGGGCTGGCACCCATGGGACACCCTCTGCCCCCAGCCGCAGCCTGTCAGAGCTCTGCCTGGCTGTTCCAGCCCCAGGTATTAGGACTCAGGGCTCCCCTCAGGAAGCTGGGCCCAGCTGGGATTGCCGAGGGGCCCCTAGCCCTGGCAGCGGTCCTGGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:6468016|6468219 hsa-miR-604 0 0 1
chr1:6468016|6468219 hsa-miR-619-5p 0 0 1
chr1:6468016|6468219 hsa-miR-619-3p 0 0 1
chr1:6468016|6468219 hsa-miR-637 1 1 1
chr1:6468016|6468219 hsa-miR-646 0 0 1
chr1:6468016|6468219 hsa-miR-765 0 0 1
chr1:6468016|6468219 hsa-miR-939-5p 0 0 1
chr1:6468016|6468219 hsa-miR-939-3p 0 0 1
chr1:6468016|6468219 hsa-miR-1200 0 1 1
chr1:6468016|6468219 hsa-miR-1202 0 1 1
chr1:6468016|6468219 hsa-miR-296-5p 0 1 1
chr1:6468016|6468219 hsa-miR-486-3p 0 0 1
chr1:6468016|6468219 hsa-miR-485-5p 1 1 1
chr1:6468016|6468219 hsa-miR-423-5p 0 0 1
chr1:6468016|6468219 hsa-miR-1207-3p 0 0 1
chr1:6468016|6468219 hsa-miR-125a-5p 0 1 1
chr1:6468016|6468219 hsa-miR-516a-3p 0 0 1
chr1:6468016|6468219 hsa-miR-1233 0 0 1
chr1:6468016|6468219 hsa-miR-125b 0 0 1
chr1:6468016|6468219 hsa-miR-1308 0 0 1
chr1:6468016|6468219 hsa-miR-151-3p 0 0 1
chr1:6468016|6468219 hsa-miR-612 0 1 0
chr1:6468016|6468219 hsa-miR-762 1 1 0
chr1:6468016|6468219 hsa-miR-665 1 0 0
chr1:6468016|6468219 hsa-miR-1275 1 0 0
chr1:6468016|6468219 hsa-miR-3132 1 0 0
chr1:6468016|6468219 hsa-miR-3176 1 1 0
chr1:6468016|6468219 hsa-miR-3196 1 0 0
chr1:6468016|6468219 hsa-miR-4260 1 0 0
chr1:6468016|6468219 hsa-miR-3657 0 1 0
chr1:6468016|6468219 hsa-miR-3661 1 1 0
chr1:6468016|6468219 hsa-miR-3917 0 1 0
chr1:6468016|6468219 hsa-miR-3921 0 1 0
chr1:6468016|6468219 hsa-miR-4486 1 0 0
chr1:6468016|6468219 hsa-miR-4488 1 0 0
chr1:6468016|6468219 hsa-miR-4498 0 1 0
chr1:6468016|6468219 hsa-miR-4505 1 0 0
chr1:6468016|6468219 hsa-miR-4507 1 0 0
chr1:6468016|6468219 hsa-miR-4526 1 1 0
chr1:6468016|6468219 hsa-miR-1587 1 0 0
chr1:6468016|6468219 hsa-miR-3960 1 0 0
chr1:6468016|6468219 hsa-miR-3972 0 1 0
chr1:6468016|6468219 hsa-miR-4656 1 0 0
chr1:6468016|6468219 hsa-miR-4673 0 1 0
chr1:6468016|6468219 hsa-miR-4682 0 1 0
chr1:6468016|6468219 hsa-miR-4688 1 0 0
chr1:6468016|6468219 hsa-miR-4730 1 0 0
chr1:6468016|6468219 hsa-miR-5090 1 0 0
chr1:6468016|6468219 hsa-miR-5787 1 1 0
chr1:6468016|6468219 hsa-miR-6069 1 1 0
chr1:6468016|6468219 hsa-miR-6086 1 0 0
chr1:6468016|6468219 hsa-miR-7150 1 0 0
chr1:6468016|6468219 hsa-miR-7976 0 1 0
chr1:6468016|6468219 hsa-miR-8072 1 0 0
chr1:6468016|6468219 hsa-miR-8089 1 0 0
chr1:6468016|6468219 hsa-miR-12119 1 0 0
chr1:6468016|6468219 hsa-miR-6734-5p 0 1 0
chr1:6468016|6468219 hsa-miR-4731-5p 1 1 0
chr1:6468016|6468219 hsa-miR-6840-3p 0 1 0
chr1:6468016|6468219 hsa-miR-671-5p 1 0 0
chr1:6468016|6468219 hsa-miR-7106-5p 1 0 0
chr1:6468016|6468219 hsa-miR-4687-3p 1 0 0
chr1:6468016|6468219 hsa-miR-1233-3p 0 1 0
chr1:6468016|6468219 hsa-miR-210-5p 0 1 0
chr1:6468016|6468219 hsa-miR-27a-5p 0 1 0
chr1:6468016|6468219 hsa-miR-6804-5p 0 1 0
chr1:6468016|6468219 hsa-miR-6089 1 0 0
chr1:6468016|6468219 hsa-miR-4695-5p 1 0 0
chr1:6468016|6468219 hsa-miR-6741-5p 0 1 0
chr1:6468016|6468219 hsa-miR-6727-5p 1 0 0
chr1:6468016|6468219 hsa-miR-197-5p 1 0 0
chr1:6468016|6468219 hsa-miR-6776-5p 1 0 0
chr1:6468016|6468219 hsa-miR-3180-3p 1 0 0
chr1:6468016|6468219 hsa-miR-185-3p 0 1 0
chr1:6468016|6468219 hsa-miR-6829-5p 1 0 0
chr1:6468016|6468219 hsa-miR-6805-5p 1 0 0
chr1:6468016|6468219 hsa-miR-6827-5p 0 1 0
chr1:6468016|6468219 hsa-miR-5006-5p 0 1 0
chr1:6468016|6468219 hsa-miR-6858-3p 0 1 0
chr1:6468016|6468219 hsa-miR-6852-5p 0 1 0
chr1:6468016|6468219 hsa-miR-6835-5p 1 0 0
chr1:6468016|6468219 hsa-miR-7109-5p 1 0 0
chr1:6468016|6468219 hsa-miR-6501-5p 1 1 0
chr1:6468016|6468219 hsa-miR-6824-5p 1 0 0
chr1:6468016|6468219 hsa-miR-6789-5p 0 1 0
chr1:6468016|6468219 hsa-miR-6769a-3p 0 1 0
chr1:6468016|6468219 hsa-miR-526b-5p 0 1 0
chr1:6468016|6468219 hsa-miR-6779-3p 0 1 0
chr1:6468016|6468219 hsa-miR-10400-5p 1 0 0
chr1:6468016|6468219 hsa-miR-1207-5p 1 0 0
chr1:6468016|6468219 hsa-miR-1233-5p 1 0 0
chr1:6468016|6468219 hsa-miR-4763-3p 1 1 0
chr1:6468016|6468219 hsa-miR-6787-5p 1 0 0
chr1:6468016|6468219 hsa-miR-6812-5p 1 0 0
chr1:6468016|6468219 hsa-miR-6816-5p 1 0 0
chr1:6468016|6468219 hsa-miR-5001-5p 1 1 0
chr1:6468016|6468219 hsa-miR-6743-5p 1 0 0
chr1:6468016|6468219 hsa-miR-6756-5p 1 0 0
chr1:6468016|6468219 hsa-miR-6803-5p 1 0 0
chr1:6468016|6468219 hsa-miR-6751-5p 1 0 0
chr1:6468016|6468219 hsa-miR-6808-5p 1 0 0
chr1:6468016|6468219 hsa-miR-7111-5p 1 0 0
chr1:6468016|6468219 hsa-miR-3620-5p 1 0 0
chr1:6468016|6468219 hsa-miR-1237-5p 1 0 0
chr1:6468016|6468219 hsa-miR-1909-3p 1 0 0
chr1:6468016|6468219 hsa-miR-328-5p 1 0 0
chr1:6468016|6468219 hsa-miR-4685-5p 0 1 0
chr1:6468016|6468219 hsa-miR-6735-5p 1 0 0
chr1:6468016|6468219 hsa-miR-6846-5p 1 1 0
chr1:6468016|6468219 hsa-miR-6848-5p 1 1 0
chr1:6468016|6468219 hsa-miR-6858-5p 1 0 0
chr1:6468016|6468219 hsa-miR-6889-5p 0 1 0
chr1:6468016|6468219 hsa-miR-4697-5p 1 0 0
chr1:6468016|6468219 hsa-miR-4723-5p 1 1 0
chr1:6468016|6468219 hsa-miR-3085-5p 0 1 0
chr1:6468016|6468219 hsa-miR-6773-5p 0 1 0
chr1:6468016|6468219 hsa-miR-7843-5p 1 0 0
chr1:6468016|6468219 hsa-miR-4667-5p 1 0 0
chr1:6468016|6468219 hsa-miR-6791-5p 1 1 0
chr1:6468016|6468219 hsa-miR-4722-3p 0 1 0
chr1:6468016|6468219 hsa-miR-6801-3p 0 1 0
chr1:6468016|6468219 hsa-miR-3922-3p 0 1 0
chr1:6468016|6468219 hsa-miR-3927-3p 0 1 0
chr1:6468016|6468219 hsa-miR-125b-5p 0 1 0
chr1:6468016|6468219 hsa-miR-301b-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr1:6468016|6468219
ORF Type ORF1
Protein Length 68
Nucleotide Length 204
Protein Sequence LLKSKSEASLLQLLAGAGTHGTPSAPSRSLSELCLAVPAPGIRTQGSPQEAGPSWDCRGAPSPGSGPG
Nucleotide Sequence CTGCTCAAGTCTAAGTCCGAGGCCAGCCTCCTCCAGCTGCTGGCAGGGGCTGGCACCCATGGGACACCCTCTGCCCCCAGCCGCAGCCTGTCAGAGCTCTGCCTGGCTGTTCCAGCCCCAGGTATTAGGACTCAGGGCTCCCCTCAGGAAGCTGGGCCCAGCTGGGATTGCCGAGGGGCCCCTAGCCCTGGCAGCGGTCCTGGG
CircID chr1:6468016|6468219
ORF Type ORF2
Protein Length 51
Nucleotide Length 153
Protein Sequence MAPMGHPLPPAAACQSSAWLFQPQVLGLRAPLRKLGPAGIAEGPLALAAVL
Nucleotide Sequence CTGGCACCCATGGGACACCCTCTGCCCCCAGCCGCAGCCTGTCAGAGCTCTGCCTGGCTGTTCCAGCCCCAGGTATTAGGACTCAGGGCTCCCCTCAGGAAGCTGGGCCCAGCTGGGATTGCCGAGGGGCCCCTAGCCCTGGCAGCGGTCCTG
CircID chr1:6468016|6468219
ORF Type ORF3
Protein Length 28
Nucleotide Length 84
Protein Sequence MRLGAEGVPWVPAPASSWRRLASDLDLS
Nucleotide Sequence CTGCGGCTGGGGGCAGAGGGTGTCCCATGGGTGCCAGCCCCTGCCAGCAGCTGGAGGAGGCTGGCCTCGGACTTAGACTTGAGC
CircID chr1:6468016|6468219
ORF Type ORF4
Protein Length 36
Nucleotide Length 111
Protein Sequence MGLEQPGRALTGCGWGQRVSHGCQPLPAAGGGWPRT
Nucleotide Sequence CTGGGGCTGGAACAGCCAGGCAGAGCTCTGACAGGCTGCGGCTGGGGGCAGAGGGTGTCCCATGGGTGCCAGCCCCTGCCAGCAGCTGGAGGAGGCTGGCCTCGGACTTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab