CircRNA Information

General Information
circRNA Basic Information
CircID chr1:6523724|6523944
Strand -
CircType exon
Host Gene ENSG00000162408.10;
Algorism CIRI2;
Sequence CTCCTTCCCTAAACCCTGTACAGCTTCCTGGGCCAACTCTAGCCCCAGTACGGCCACCTGACCCACAGCTGATAGCTCCCTCTAGAGGCAACGATTTTTCTTTACTGATAGGGACTGAAGAAAAAGACTTGACCTTCATACAGGCCGCATTTAAAGCCTGAAGGCAAACCTAGATTGAATGCAAATGCAATTACAGGGCACCAGTTTCATTCTTCCAGAGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:6523724|6523944 hsa-miR-33a-5p 0 0 1
chr1:6523724|6523944 hsa-miR-33a-3p 0 0 1
chr1:6523724|6523944 hsa-miR-186-5p 0 0 1
chr1:6523724|6523944 hsa-miR-186-3p 0 0 1
chr1:6523724|6523944 hsa-miR-328-5p 0 0 1
chr1:6523724|6523944 hsa-miR-328-3p 0 0 1
chr1:6523724|6523944 hsa-miR-484 0 0 1
chr1:6523724|6523944 hsa-miR-493-5p 0 0 1
chr1:6523724|6523944 hsa-miR-493-3p 0 0 1
chr1:6523724|6523944 hsa-miR-571 0 1 1
chr1:6523724|6523944 hsa-miR-629-5p 0 0 1
chr1:6523724|6523944 hsa-miR-629-3p 0 0 1
chr1:6523724|6523944 hsa-miR-33b-5p 0 0 1
chr1:6523724|6523944 hsa-miR-33b-3p 0 0 1
chr1:6523724|6523944 hsa-miR-1264 0 1 1
chr1:6523724|6523944 hsa-miR-874-5p 0 0 1
chr1:6523724|6523944 hsa-miR-874-3p 0 0 1
chr1:6523724|6523944 hsa-miR-920 1 0 1
chr1:6523724|6523944 hsa-miR-1234-3p 0 0 1
chr1:6523724|6523944 hsa-miR-1299 0 0 1
chr1:6523724|6523944 hsa-miR-302f 0 0 1
chr1:6523724|6523944 hsa-miR-1234 0 0 1
chr1:6523724|6523944 hsa-miR-125a-3p 1 0 1
chr1:6523724|6523944 hsa-miR-146b-3p 0 0 1
chr1:6523724|6523944 hsa-miR-1207-3p 0 0 1
chr1:6523724|6523944 hsa-miR-875-3p 0 0 1
chr1:6523724|6523944 hsa-miR-518d-5p 0 1 1
chr1:6523724|6523944 hsa-miR-519b-5p 0 1 1
chr1:6523724|6523944 hsa-miR-519c-5p 0 1 1
chr1:6523724|6523944 hsa-miR-520c-5p 0 1 1
chr1:6523724|6523944 hsa-miR-455-3p 0 0 1
chr1:6523724|6523944 hsa-miR-582-3p 0 0 1
chr1:6523724|6523944 hsa-miR-548c-3p 0 0 1
chr1:6523724|6523944 hsa-miR-7 0 0 1
chr1:6523724|6523944 hsa-miR-526a 0 0 1
chr1:6523724|6523944 hsa-miR-643 0 1 0
chr1:6523724|6523944 hsa-miR-762 1 0 0
chr1:6523724|6523944 hsa-miR-760 1 0 0
chr1:6523724|6523944 hsa-miR-1275 1 0 0
chr1:6523724|6523944 hsa-miR-1538 1 0 0
chr1:6523724|6523944 hsa-miR-548q 0 1 0
chr1:6523724|6523944 hsa-miR-4270 1 0 0
chr1:6523724|6523944 hsa-miR-3937 1 0 0
chr1:6523724|6523944 hsa-miR-4489 0 1 0
chr1:6523724|6523944 hsa-miR-4510 0 1 0
chr1:6523724|6523944 hsa-miR-4739 1 0 0
chr1:6523724|6523944 hsa-miR-5698 1 0 0
chr1:6523724|6523944 hsa-miR-5787 1 0 0
chr1:6523724|6523944 hsa-miR-6090 1 0 0
chr1:6523724|6523944 hsa-miR-6127 1 0 0
chr1:6523724|6523944 hsa-miR-6129 1 0 0
chr1:6523724|6523944 hsa-miR-6133 1 0 0
chr1:6523724|6523944 hsa-miR-8089 1 0 0
chr1:6523724|6523944 hsa-miR-11399 1 0 0
chr1:6523724|6523944 hsa-miR-6840-3p 1 1 0
chr1:6523724|6523944 hsa-miR-671-5p 1 0 0
chr1:6523724|6523944 hsa-miR-6825-5p 1 0 0
chr1:6523724|6523944 hsa-miR-6799-5p 1 0 0
chr1:6523724|6523944 hsa-miR-766-5p 1 0 0
chr1:6523724|6523944 hsa-miR-6746-5p 1 0 0
chr1:6523724|6523944 hsa-miR-4474-3p 1 0 0
chr1:6523724|6523944 hsa-miR-8069 1 0 0
chr1:6523724|6523944 hsa-miR-7108-5p 1 0 0
chr1:6523724|6523944 hsa-miR-6793-5p 1 0 0
chr1:6523724|6523944 hsa-miR-6732-5p 1 0 0
chr1:6523724|6523944 hsa-miR-6805-5p 1 0 0
chr1:6523724|6523944 hsa-miR-6827-5p 1 0 0
chr1:6523724|6523944 hsa-miR-6798-5p 1 0 0
chr1:6523724|6523944 hsa-miR-6760-5p 1 0 0
chr1:6523724|6523944 hsa-miR-4738-3p 1 1 0
chr1:6523724|6523944 hsa-miR-1229-5p 1 0 0
chr1:6523724|6523944 hsa-miR-4640-5p 1 0 0
chr1:6523724|6523944 hsa-miR-6823-5p 0 1 0
chr1:6523724|6523944 hsa-miR-149-3p 1 0 0
chr1:6523724|6523944 hsa-miR-6802-5p 1 0 0
chr1:6523724|6523944 hsa-miR-4715-5p 0 1 0
chr1:6523724|6523944 hsa-miR-2114-5p 0 1 0
chr1:6523724|6523944 hsa-miR-4703-3p 0 1 0
chr1:6523724|6523944 hsa-miR-518c-5p 1 1 0
chr1:6523724|6523944 hsa-miR-520g-5p 0 1 0
chr1:6523724|6523944 hsa-miR-517-5p 0 1 0
chr1:6523724|6523944 hsa-miR-219b-3p 0 1 0
chr1:6523724|6523944 hsa-miR-522-3p 0 1 0
chr1:6523724|6523944 hsa-miR-6812-5p 1 0 0
chr1:6523724|6523944 hsa-miR-6865-5p 0 1 0
chr1:6523724|6523944 hsa-miR-6870-5p 1 0 0
chr1:6523724|6523944 hsa-miR-1343-5p 1 0 0
chr1:6523724|6523944 hsa-miR-6726-5p 1 0 0
chr1:6523724|6523944 hsa-miR-6737-5p 1 0 0
chr1:6523724|6523944 hsa-miR-6743-5p 1 0 0
chr1:6523724|6523944 hsa-miR-6756-5p 1 0 0
chr1:6523724|6523944 hsa-miR-6815-5p 1 0 0
chr1:6523724|6523944 hsa-miR-6819-5p 1 0 0
chr1:6523724|6523944 hsa-miR-7107-5p 0 1 0
chr1:6523724|6523944 hsa-miR-6797-5p 1 0 0
chr1:6523724|6523944 hsa-miR-3620-5p 1 0 0
chr1:6523724|6523944 hsa-miR-10526-3p 1 0 0
chr1:6523724|6523944 hsa-miR-6794-5p 1 0 0
chr1:6523724|6523944 hsa-miR-6846-5p 1 0 0
chr1:6523724|6523944 hsa-miR-6848-5p 1 0 0
chr1:6523724|6523944 hsa-miR-939-5p 1 1 0
chr1:6523724|6523944 hsa-miR-6773-5p 1 0 0
chr1:6523724|6523944 hsa-miR-1914-3p 1 0 0
chr1:6523724|6523944 hsa-miR-4747-5p 0 1 0
chr1:6523724|6523944 hsa-miR-5591-5p 1 1 0
chr1:6523724|6523944 hsa-miR-518e-5p 0 1 0
chr1:6523724|6523944 hsa-miR-518f-5p 0 1 0
chr1:6523724|6523944 hsa-miR-519a-5p 0 1 0
chr1:6523724|6523944 hsa-miR-522-5p 0 1 0
chr1:6523724|6523944 hsa-miR-523-5p 0 1 0
chr1:6523724|6523944 hsa-miR-526a-5p 0 1 0
chr1:6523724|6523944 hsa-miR-6500-5p 1 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr1:6523724|6523944
ORF Type ORF1
Protein Length 30
Nucleotide Length 93
Protein Sequence MIAPSRGNDFSLLIGTEEKDLTFIQAAFKA
Nucleotide Sequence CTGATAGCTCCCTCTAGAGGCAACGATTTTTCTTTACTGATAGGGACTGAAGAAAAAGACTTGACCTTCATACAGGCCGCATTTAAAGCCTGA
CircID chr1:6523724|6523944
ORF Type ORF2
Protein Length 46
Nucleotide Length 138
Protein Sequence MKVKSFSSVPISKEKSLPLEGAISCGSGGRTGARVGPGSCTGFREG
Nucleotide Sequence ATGAAGGTCAAGTCTTTTTCTTCAGTCCCTATCAGTAAAGAAAAATCGTTGCCTCTAGAGGGAGCTATCAGCTGTGGGTCAGGTGGCCGTACTGGGGCTAGAGTTGGCCCAGGAAGCTGTACAGGGTTTAGGGAAGGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab